Wall clock time and date at job start Wed Apr 1 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31800 * 119.12374 * 2 1 4 4 C 1.32328 * 120.82018 * 179.97438 * 3 2 1 5 5 C 1.38620 * 119.09740 * 359.74976 * 4 3 2 6 6 C 1.38579 * 118.40121 * 0.47018 * 5 4 3 7 7 C 1.50698 * 120.44855 * 179.80513 * 6 5 4 8 8 C 1.53003 * 109.47240 * 124.71742 * 7 6 5 9 9 C 1.50698 * 109.47240 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99720 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00209 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00028 * 180.02562 * 11 9 8 13 13 H 1.08997 * 115.55454 * 350.68106 * 12 11 9 14 14 C 1.53030 * 117.50161 * 136.41794 * 12 11 9 15 15 C 1.52826 * 117.50073 * 205.00251 * 12 11 9 16 16 C 1.53173 * 117.71429 * 144.89864 * 15 12 11 17 17 C 1.53353 * 108.76887 * 158.88751 * 16 15 12 18 18 N 1.46842 * 108.81622 * 51.30836 * 17 16 15 19 19 C 1.36936 * 120.38671 * 123.07913 * 18 17 16 20 20 H 1.07992 * 120.00073 * 208.91669 * 19 18 17 21 21 C 1.38813 * 119.99790 * 28.91905 * 19 18 17 22 22 N 1.31616 * 120.00097 * 17.83495 * 21 19 18 23 23 Si 1.86797 * 119.99791 * 197.83702 * 21 19 18 24 24 H 1.48500 * 109.47165 * 59.99988 * 23 21 19 25 25 H 1.48502 * 109.47088 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47098 * 299.99845 * 23 21 19 27 27 C 1.46851 * 119.23035 * 303.09707 * 18 17 16 28 28 C 1.53182 * 117.71039 * 0.13249 * 15 12 11 29 29 N 1.31777 * 119.12066 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47250 * 270.02856 * 1 2 3 31 31 H 1.09005 * 109.47221 * 30.02574 * 1 2 3 32 32 H 1.08999 * 109.47225 * 150.01944 * 1 2 3 33 33 H 1.07995 * 120.44920 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.79823 * 180.25000 * 5 4 3 35 35 H 1.09001 * 109.46797 * 4.72014 * 7 6 5 36 36 H 1.08999 * 109.47085 * 244.71927 * 7 6 5 37 37 H 1.08999 * 109.47232 * 300.00094 * 8 7 6 38 38 H 1.09000 * 109.46547 * 60.00131 * 8 7 6 39 39 H 0.97002 * 119.99675 * 359.97438 * 11 9 8 40 40 H 1.09006 * 117.49829 * 214.95213 * 14 12 11 41 41 H 1.08994 * 117.50687 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.58903 * 278.66598 * 16 15 12 43 43 H 1.08993 * 109.59299 * 39.10006 * 16 15 12 44 44 H 1.08996 * 109.58138 * 291.50339 * 17 16 15 45 45 H 1.09005 * 109.58043 * 171.10180 * 17 16 15 46 46 H 0.97003 * 120.00251 * 179.97438 * 22 21 19 47 47 H 1.09008 * 109.58019 * 297.10966 * 27 18 17 48 48 H 1.08999 * 109.57922 * 176.70370 * 27 18 17 49 49 H 1.08998 * 109.59313 * 320.90662 * 28 15 12 50 50 H 1.09004 * 109.58981 * 81.19286 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1808 -0.0002 0.0063 6 6 3.4712 -1.1905 0.0014 7 6 4.1959 -2.5117 0.0030 8 6 3.7155 -3.3557 1.1853 9 6 4.4398 -4.6771 1.1865 10 8 5.2600 -4.9199 0.3266 11 7 4.1762 -5.5893 2.1431 12 6 4.8808 -6.8737 2.1446 13 1 5.4812 -7.0816 1.2590 14 6 5.3972 -7.3948 3.4875 15 6 4.1904 -8.0565 2.8226 16 6 4.3897 -9.4454 2.2083 17 6 4.0912 -10.5048 3.2761 18 7 2.7811 -10.2182 3.8744 19 6 1.7901 -11.1631 3.8572 20 1 0.7540 -10.8588 3.8462 21 6 2.1174 -12.5121 3.8538 22 7 3.3227 -12.8977 4.2155 23 14 0.8472 -13.7800 3.3359 24 1 0.4202 -13.5110 1.9393 25 1 1.4413 -15.1385 3.4195 26 1 -0.3297 -13.6986 4.2378 27 6 2.5459 -8.9063 4.4909 28 6 2.8129 -7.8146 3.4476 29 7 2.1483 -1.1512 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 3.9906 2.1373 0.0009 34 1 5.2608 -0.0003 0.0109 35 1 5.2682 -2.3378 0.0928 36 1 3.9902 -3.0401 -0.9279 37 1 3.9212 -2.8273 2.1162 38 1 2.6432 -3.5295 1.0955 39 1 3.5205 -5.3949 2.8310 40 1 6.3378 -7.9457 3.4855 41 1 5.2131 -6.7819 4.3698 42 1 3.7094 -9.5736 1.3663 43 1 5.4198 -9.5500 1.8677 44 1 4.8601 -10.4723 4.0479 45 1 4.0742 -11.4928 2.8159 46 1 3.5514 -13.8404 4.2136 47 1 3.2193 -8.7747 5.3380 48 1 1.5120 -8.8423 4.8302 49 1 2.7968 -6.8370 3.9294 50 1 2.0479 -7.8523 2.6721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661068716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:46 Heat of formation + Delta-G solvation = 26.063014 kcal Electronic energy + Delta-G solvation = -29054.616559 eV Core-core repulsion = 25081.930097 eV Total energy + Delta-G solvation = -3972.686462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.07944 -41.11866 -39.76394 -37.16183 -36.08241 -34.49220 -34.34898 -33.40753 -32.39666 -31.62189 -29.96225 -29.42698 -27.02474 -26.21472 -24.30082 -24.04934 -23.34050 -22.80954 -22.10105 -21.28673 -19.79625 -18.64707 -18.48902 -18.11150 -17.28362 -16.98298 -16.72182 -16.56230 -16.17335 -16.08429 -15.71956 -15.42279 -15.16286 -14.92994 -14.81771 -14.58578 -14.20462 -14.08932 -13.81714 -13.66306 -13.56422 -13.28489 -13.20843 -13.09710 -13.04723 -12.86407 -12.55774 -12.53352 -12.29709 -12.26565 -12.01709 -11.79574 -11.78196 -11.54113 -11.37849 -11.26458 -11.00057 -10.67267 -10.46526 -10.32621 -10.20943 -9.64488 -8.61515 -7.85765 -5.31781 -0.07406 0.09390 1.46377 1.49123 1.55533 1.57515 2.08022 2.51871 2.74140 2.93700 2.96123 3.16724 3.28967 3.47717 3.65159 3.73444 3.82522 3.89371 3.99019 4.07017 4.10386 4.14658 4.15081 4.24646 4.49519 4.53551 4.56116 4.63189 4.65975 4.72215 4.73657 4.85150 4.85218 4.92849 4.96938 4.97885 5.03212 5.08658 5.09461 5.10712 5.18268 5.32100 5.38822 5.50132 5.52506 5.57688 5.66176 5.78053 6.07496 6.41684 6.53937 7.13360 7.16962 7.23638 7.89667 8.40415 9.19090 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.001846 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.482275 B =15166.405861 C =16125.666297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.301 3.699 3 N -0.546 5.546 4 C 0.148 3.852 5 C -0.227 4.227 6 C 0.169 3.831 7 C -0.050 4.050 8 C -0.120 4.120 9 C 0.517 3.483 10 O -0.582 6.582 11 N -0.688 5.688 12 C 0.086 3.914 13 H 0.118 0.882 14 C -0.169 4.169 15 C -0.117 4.117 16 C -0.095 4.095 17 C 0.181 3.819 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.065 0.935 21 C -0.051 4.051 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.144 3.856 28 C -0.082 4.082 29 N -0.537 5.537 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.176 0.824 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.414 0.586 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.000 1.000 45 H 0.053 0.947 46 H 0.250 0.750 47 H 0.018 0.982 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 29.508 -6.081 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.262 5.262 4 C -0.018 4.018 5 C -0.249 4.249 6 C 0.024 3.976 7 C -0.089 4.089 8 C -0.160 4.160 9 C 0.306 3.694 10 O -0.462 6.462 11 N -0.338 5.338 12 C -0.020 4.020 13 H 0.136 0.864 14 C -0.207 4.207 15 C -0.118 4.118 16 C -0.134 4.134 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.082 0.918 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.019 3.981 28 C -0.121 4.121 29 N -0.253 5.253 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.217 0.783 34 H 0.193 0.807 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.251 0.749 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.018 0.982 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.036 0.964 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.998 29.200 -6.662 29.967 hybrid contribution 0.261 -1.298 0.160 1.334 sum 1.258 27.902 -6.502 28.677 Atomic orbital electron populations 1.20646 0.84304 1.04642 1.04695 1.23749 0.99350 0.83319 0.90125 1.68325 1.11460 1.30605 1.15799 1.23850 0.89187 1.00171 0.88547 1.23095 1.04436 0.93295 1.04046 1.21876 0.89551 0.96508 0.89695 1.20286 0.99805 0.89586 0.99178 1.21494 1.02016 0.91337 1.01125 1.21101 0.81941 0.86315 0.80090 1.90689 1.36616 1.80208 1.38705 1.45361 1.42896 1.14919 1.30660 1.21610 0.99628 0.83452 0.97312 0.86385 1.23598 0.98107 1.02706 0.96313 1.21788 0.94789 0.92677 1.02565 1.21631 1.00022 0.93703 0.98064 1.20523 0.85385 0.96286 0.92303 1.44227 1.11628 1.12023 1.65260 1.19467 0.88478 0.86838 1.44551 0.91763 1.25782 0.98614 0.99289 1.00946 1.70172 1.21806 1.15008 1.50889 0.85397 0.78873 0.78014 0.78513 1.20665 1.22086 1.19994 1.21013 0.98474 0.85172 0.93448 1.21439 0.93861 0.98602 0.98211 1.68090 1.10338 1.31069 1.15766 0.88603 0.88944 0.89365 0.78271 0.80651 0.87959 0.89971 0.86696 0.87238 0.74868 0.88293 0.87166 0.93501 0.91588 0.98220 0.92899 0.94144 0.96423 0.92746 0.89615 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.32 71.24 0.74 -0.28 16 2 C 0.30 5.33 7.64 138.75 1.06 6.39 16 3 N -0.55 -9.32 10.33 -187.84 -1.94 -11.27 16 4 C 0.15 1.73 11.31 84.71 0.96 2.69 16 5 C -0.23 -2.55 9.80 22.44 0.22 -2.33 16 6 C 0.17 2.66 6.20 42.56 0.26 2.92 16 7 C -0.05 -0.77 4.94 29.85 0.15 -0.62 16 8 C -0.12 -1.77 5.57 29.85 0.17 -1.60 16 9 C 0.52 11.36 7.83 87.66 0.69 12.05 16 10 O -0.58 -17.44 15.55 -3.05 -0.05 -17.48 16 11 N -0.69 -14.45 5.34 -442.77 -2.37 -16.82 16 12 C 0.09 2.28 6.14 44.94 0.28 2.56 16 13 H 0.12 3.53 7.40 -2.39 -0.02 3.51 16 14 C -0.17 -4.36 9.86 30.55 0.30 -4.06 16 15 C -0.12 -3.60 1.94 -52.17 -0.10 -3.70 16 16 C -0.09 -3.61 5.83 30.77 0.18 -3.43 16 17 C 0.18 8.73 5.40 86.43 0.47 9.19 16 18 N -0.61 -30.27 2.94 -698.88 -2.05 -32.32 16 19 C -0.26 -14.47 9.54 84.03 0.80 -13.66 16 20 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 21 C -0.05 -2.85 4.88 84.86 0.41 -2.44 16 22 N -0.93 -55.41 11.23 21.65 0.24 -55.17 16 23 Si 0.96 45.10 29.59 68.60 2.03 47.13 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 27 C 0.14 5.72 6.52 86.43 0.56 6.28 16 28 C -0.08 -2.50 5.37 30.77 0.17 -2.33 16 29 N -0.54 -10.07 9.94 -176.04 -1.75 -11.82 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.18 0.89 8.01 -2.91 -0.02 0.87 16 35 H 0.10 1.36 7.90 -2.39 -0.02 1.34 16 36 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.61 7.98 -2.39 -0.02 1.59 16 39 H 0.41 6.62 7.12 -92.71 -0.66 5.96 16 40 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 44 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.05 2.93 5.93 -2.38 -0.01 2.91 16 46 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 49 H 0.09 1.91 6.75 -2.39 -0.02 1.90 16 50 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -73.68 406.23 1.70 -71.98 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.28 Total: 18.16 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 7.30 Total: 7.62 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -7.87 Total: -127.40 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.68 1.70 -71.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661068716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.039 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds