Wall clock time and date at job start Wed Apr 1 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31807 * 119.12803 * 2 1 4 4 C 1.32319 * 120.81988 * 179.97438 * 3 2 1 5 5 C 1.38621 * 119.10474 * 359.74672 * 4 3 2 6 6 C 1.38580 * 118.39528 * 0.51183 * 5 4 3 7 7 C 1.50699 * 120.44443 * 179.76249 * 6 5 4 8 8 C 1.52993 * 109.47327 * 124.72686 * 7 6 5 9 9 C 1.50699 * 109.47327 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00150 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99816 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99743 * 179.97438 * 11 9 8 13 13 H 1.09000 * 115.55235 * 9.29928 * 12 11 9 14 14 C 1.53031 * 117.50274 * 223.60647 * 12 11 9 15 15 C 1.52821 * 117.50027 * 155.02222 * 12 11 9 16 16 C 1.53183 * 117.71509 * 359.86202 * 15 12 11 17 17 C 1.53350 * 108.77185 * 158.88592 * 16 15 12 18 18 N 1.46841 * 108.81156 * 51.30476 * 17 16 15 19 19 C 1.36942 * 120.38289 * 123.12499 * 18 17 16 20 20 H 1.08000 * 120.00221 * 208.88673 * 19 18 17 21 21 C 1.38816 * 119.99838 * 28.88077 * 19 18 17 22 22 N 1.31619 * 119.99967 * 17.85698 * 21 19 18 23 23 Si 1.86798 * 119.99860 * 197.85836 * 21 19 18 24 24 H 1.48497 * 109.47556 * 90.00216 * 23 21 19 25 25 H 1.48507 * 109.46842 * 209.99995 * 23 21 19 26 26 H 1.48498 * 109.46972 * 329.99675 * 23 21 19 27 27 C 1.46843 * 119.23529 * 303.09991 * 18 17 16 28 28 C 1.53175 * 117.71208 * 215.09810 * 15 12 11 29 29 N 1.31784 * 119.12011 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47163 * 269.97873 * 1 2 3 31 31 H 1.08997 * 109.47291 * 29.97971 * 1 2 3 32 32 H 1.08995 * 109.47563 * 149.97940 * 1 2 3 33 33 H 1.08000 * 120.44804 * 180.02562 * 4 3 2 34 34 H 1.07992 * 120.80021 * 180.25504 * 5 4 3 35 35 H 1.08995 * 109.47567 * 4.72065 * 7 6 5 36 36 H 1.09011 * 109.46961 * 244.72228 * 7 6 5 37 37 H 1.09005 * 109.46915 * 300.00091 * 8 7 6 38 38 H 1.08997 * 109.47819 * 59.99206 * 8 7 6 39 39 H 0.97000 * 120.00157 * 359.97438 * 11 9 8 40 40 H 1.08998 * 117.49819 * 359.97438 * 14 12 11 41 41 H 1.08997 * 117.50215 * 145.01211 * 14 12 11 42 42 H 1.09000 * 109.58731 * 278.67555 * 16 15 12 43 43 H 1.09005 * 109.58821 * 39.10190 * 16 15 12 44 44 H 1.09003 * 109.57956 * 291.50709 * 17 16 15 45 45 H 1.08991 * 109.58051 * 171.10721 * 17 16 15 46 46 H 0.97002 * 120.00143 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58180 * 297.10488 * 27 18 17 48 48 H 1.09007 * 109.58179 * 176.70728 * 27 18 17 49 49 H 1.09000 * 109.59579 * 320.90263 * 28 15 12 50 50 H 1.08998 * 109.59301 * 81.33682 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1904 0.0005 5 6 4.1808 -0.0003 0.0064 6 6 3.4711 -1.1905 0.0007 7 6 4.1960 -2.5118 0.0013 8 6 3.7154 -3.3566 1.1828 9 6 4.4397 -4.6781 1.1831 10 8 5.2593 -4.9205 0.3227 11 7 4.1767 -5.5905 2.1396 12 6 4.8805 -6.8754 2.1395 13 1 5.7084 -6.9580 1.4353 14 6 4.0531 -8.1344 2.4083 15 6 5.0133 -7.6074 3.4744 16 6 4.4049 -6.9443 4.7141 17 6 4.1720 -8.0180 5.7839 18 7 5.4150 -8.7769 5.9715 19 6 5.9950 -8.8612 7.2092 20 1 7.0644 -8.9831 7.2973 21 6 5.2082 -8.7898 8.3506 22 7 3.9105 -8.9939 8.2692 23 14 5.9913 -8.4040 10.0021 24 1 5.9978 -6.9345 10.2157 25 1 5.2122 -9.0580 11.0841 26 1 7.3862 -8.9130 10.0194 27 6 6.0287 -9.4449 4.8167 28 6 6.2994 -8.4000 3.7274 29 7 2.1482 -1.1513 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 3.9907 2.1372 0.0009 34 1 5.2607 -0.0003 0.0111 35 1 5.2682 -2.3380 0.0912 36 1 3.9903 -3.0395 -0.9301 37 1 3.9210 -2.8289 2.1142 38 1 2.6431 -3.5304 1.0930 39 1 3.5215 -5.3964 2.8280 40 1 2.9853 -8.0065 2.5856 41 1 4.3366 -9.0451 1.8809 42 1 5.0903 -6.1886 5.0978 43 1 3.4550 -6.4790 4.4506 44 1 3.3785 -8.6911 5.4592 45 1 3.8889 -7.5426 6.7229 46 1 3.3606 -8.9436 9.0668 47 1 5.3503 -10.2064 4.4321 48 1 6.9676 -9.9087 5.1194 49 1 6.6067 -8.9007 2.8092 50 1 7.0870 -7.7230 4.0581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661068717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:51 Heat of formation + Delta-G solvation = 45.293863 kcal Electronic energy + Delta-G solvation = -29110.733205 eV Core-core repulsion = 25138.880655 eV Total energy + Delta-G solvation = -3971.852550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47217 -40.01154 -38.49116 -35.65274 -35.28860 -33.77960 -33.20527 -31.91168 -31.29891 -30.12723 -28.91848 -28.27189 -26.26421 -24.35754 -23.65181 -22.54972 -22.42937 -21.63737 -20.75885 -20.23353 -18.24403 -17.97651 -17.42123 -16.68698 -16.29518 -15.98383 -15.75710 -15.53900 -15.43899 -14.86988 -14.29465 -14.16688 -13.90711 -13.62897 -13.51063 -13.43620 -13.19074 -12.99307 -12.89123 -12.73157 -12.57776 -12.40368 -12.28544 -11.73402 -11.63602 -11.50535 -11.36883 -11.21321 -10.97527 -10.87123 -10.75877 -10.50733 -10.29954 -10.03314 -9.91680 -9.75413 -9.71262 -9.60029 -9.58226 -9.35876 -8.48816 -8.44969 -6.65906 -5.80854 -3.23884 0.51987 0.68407 2.54985 3.04540 3.35727 3.35994 3.43369 3.44423 3.51698 3.71243 4.07543 4.17390 4.45720 4.48172 4.66282 4.73301 4.79512 4.85603 4.98940 4.99546 5.09401 5.13561 5.14500 5.17657 5.28497 5.37253 5.44236 5.50160 5.52826 5.62234 5.65418 5.72273 5.87139 6.04361 6.05862 6.09173 6.11423 6.26891 6.43145 6.54943 6.57747 6.63962 6.65798 6.69458 6.81903 6.98523 7.31733 7.49762 7.62673 7.74155 7.78292 8.18610 8.44679 9.20104 9.83683 10.40361 11.26879 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.001964 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.041815 B =14252.173822 C =15213.446852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.232 4.232 6 C 0.184 3.816 7 C -0.055 4.055 8 C -0.132 4.132 9 C 0.517 3.483 10 O -0.547 6.547 11 N -0.695 5.695 12 C 0.068 3.932 13 H 0.131 0.869 14 C -0.183 4.183 15 C -0.097 4.097 16 C -0.104 4.104 17 C 0.173 3.827 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.098 4.098 29 N -0.516 5.516 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.403 0.597 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.253 0.747 47 H 0.020 0.980 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 16.876 -17.468 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.038 3.962 7 C -0.093 4.093 8 C -0.173 4.173 9 C 0.304 3.696 10 O -0.425 6.425 11 N -0.344 5.344 12 C -0.037 4.037 13 H 0.148 0.852 14 C -0.221 4.221 15 C -0.098 4.098 16 C -0.144 4.144 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.023 3.977 28 C -0.138 4.138 29 N -0.232 5.232 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.167 0.833 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.238 0.762 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.254 16.693 -17.940 24.871 hybrid contribution 0.928 0.343 1.254 1.597 sum -3.326 17.036 -16.686 24.077 Atomic orbital electron populations 1.20583 0.85632 1.04211 1.04046 1.23301 0.98248 0.83315 0.89904 1.68270 1.10227 1.30547 1.15132 1.23249 0.89675 0.98691 0.89655 1.22807 1.03129 0.94120 1.05348 1.21762 0.89596 0.95903 0.88950 1.20349 0.99361 0.89675 0.99924 1.21544 1.02380 0.93290 1.00069 1.20528 0.82561 0.85508 0.81025 1.90685 1.34868 1.79485 1.37436 1.45430 1.43105 1.15929 1.29920 1.21880 0.98829 0.81121 1.01897 0.85163 1.23523 0.97907 0.97255 1.03421 1.21948 0.98094 0.99980 0.89820 1.21808 0.97827 0.99631 0.95099 1.20749 0.87539 0.90637 0.96370 1.43974 1.26695 1.56399 1.04101 1.19214 0.91081 1.45308 0.82592 0.91736 1.25051 0.95792 1.00929 0.97907 1.70035 1.04411 1.51931 1.28238 0.86305 0.78648 0.78119 0.83800 1.21481 1.21787 1.20416 1.20861 0.96730 0.92234 0.87920 1.21689 0.94436 0.98421 0.99205 1.68093 1.09554 1.30565 1.14963 0.89473 0.89643 0.89506 0.81408 0.83326 0.88801 0.88381 0.88880 0.87663 0.76191 0.88931 0.88505 0.92104 0.93789 0.96396 0.89226 0.93652 0.96250 0.92664 0.92865 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.32 36.00 0.37 -0.19 16 2 C 0.32 3.07 7.64 -157.20 -1.20 1.87 16 3 N -0.53 -5.08 10.33 -10.72 -0.11 -5.19 16 4 C 0.15 1.15 11.31 -17.20 -0.19 0.95 16 5 C -0.23 -1.71 9.80 -39.31 -0.39 -2.10 16 6 C 0.18 1.67 6.20 -82.24 -0.51 1.16 16 7 C -0.05 -0.48 4.94 -27.89 -0.14 -0.62 16 8 C -0.13 -1.21 5.57 -27.89 -0.16 -1.36 16 9 C 0.52 6.41 7.83 -10.98 -0.09 6.33 16 10 O -0.55 -8.57 15.55 5.56 0.09 -8.48 16 11 N -0.69 -8.64 5.35 -53.88 -0.29 -8.92 16 12 C 0.07 0.97 6.14 -68.00 -0.42 0.56 16 13 H 0.13 1.98 7.40 -51.93 -0.38 1.59 16 14 C -0.18 -2.61 9.86 -26.79 -0.26 -2.87 16 15 C -0.10 -1.57 1.94 -154.49 -0.30 -1.86 16 16 C -0.10 -1.86 5.37 -26.46 -0.14 -2.01 16 17 C 0.17 3.97 5.40 -3.67 -0.02 3.95 16 18 N -0.59 -14.41 2.94 -172.26 -0.51 -14.92 16 19 C -0.25 -6.81 9.54 -15.06 -0.14 -6.95 16 20 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 22 N -0.90 -25.72 11.23 55.49 0.62 -25.10 16 23 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.07 6.51 -3.67 -0.02 3.04 16 28 C -0.10 -1.68 5.83 -26.46 -0.15 -1.83 16 29 N -0.52 -5.25 9.94 -6.99 -0.07 -5.32 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.15 0.72 8.01 -52.49 -0.42 0.30 16 35 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 36 H 0.10 0.93 8.10 -51.92 -0.42 0.51 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.91 7.98 -51.93 -0.41 0.50 16 39 H 0.40 4.39 7.12 -40.82 -0.29 4.10 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.31 5.93 -51.93 -0.31 2.01 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 1.12 7.92 -51.92 -0.41 0.71 16 49 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 50 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 406.22 15.07 6.12 6.12 Total: -1.00 -32.76 406.22 -11.05 -43.82 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.03 Total: 3.58 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -3.85 Total: -1.97 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.35 Total: -59.46 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.76 -11.05 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661068717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.110 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds