Wall clock time and date at job start Wed Apr 1 2020 03:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31807 * 119.12803 * 2 1 4 4 C 1.32319 * 120.81988 * 179.97438 * 3 2 1 5 5 C 1.38621 * 119.10474 * 359.74672 * 4 3 2 6 6 C 1.38580 * 118.39528 * 0.51183 * 5 4 3 7 7 C 1.50699 * 120.44443 * 179.76249 * 6 5 4 8 8 C 1.52993 * 109.47327 * 124.72686 * 7 6 5 9 9 C 1.50699 * 109.47327 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00150 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99816 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99743 * 179.97438 * 11 9 8 13 13 H 1.09000 * 115.55235 * 9.29928 * 12 11 9 14 14 C 1.53031 * 117.50274 * 223.60647 * 12 11 9 15 15 C 1.52821 * 117.50027 * 155.02222 * 12 11 9 16 16 C 1.53183 * 117.71509 * 359.86202 * 15 12 11 17 17 C 1.53350 * 108.77185 * 158.88592 * 16 15 12 18 18 N 1.46841 * 108.81156 * 51.30476 * 17 16 15 19 19 C 1.36942 * 120.38289 * 123.12499 * 18 17 16 20 20 H 1.08000 * 120.00221 * 208.88673 * 19 18 17 21 21 C 1.38816 * 119.99838 * 28.88077 * 19 18 17 22 22 N 1.31619 * 119.99967 * 17.85698 * 21 19 18 23 23 Si 1.86798 * 119.99860 * 197.85836 * 21 19 18 24 24 H 1.48497 * 109.47556 * 90.00216 * 23 21 19 25 25 H 1.48507 * 109.46842 * 209.99995 * 23 21 19 26 26 H 1.48498 * 109.46972 * 329.99675 * 23 21 19 27 27 C 1.46843 * 119.23529 * 303.09991 * 18 17 16 28 28 C 1.53175 * 117.71208 * 215.09810 * 15 12 11 29 29 N 1.31784 * 119.12011 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47163 * 269.97873 * 1 2 3 31 31 H 1.08997 * 109.47291 * 29.97971 * 1 2 3 32 32 H 1.08995 * 109.47563 * 149.97940 * 1 2 3 33 33 H 1.08000 * 120.44804 * 180.02562 * 4 3 2 34 34 H 1.07992 * 120.80021 * 180.25504 * 5 4 3 35 35 H 1.08995 * 109.47567 * 4.72065 * 7 6 5 36 36 H 1.09011 * 109.46961 * 244.72228 * 7 6 5 37 37 H 1.09005 * 109.46915 * 300.00091 * 8 7 6 38 38 H 1.08997 * 109.47819 * 59.99206 * 8 7 6 39 39 H 0.97000 * 120.00157 * 359.97438 * 11 9 8 40 40 H 1.08998 * 117.49819 * 359.97438 * 14 12 11 41 41 H 1.08997 * 117.50215 * 145.01211 * 14 12 11 42 42 H 1.09000 * 109.58731 * 278.67555 * 16 15 12 43 43 H 1.09005 * 109.58821 * 39.10190 * 16 15 12 44 44 H 1.09003 * 109.57956 * 291.50709 * 17 16 15 45 45 H 1.08991 * 109.58051 * 171.10721 * 17 16 15 46 46 H 0.97002 * 120.00143 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58180 * 297.10488 * 27 18 17 48 48 H 1.09007 * 109.58179 * 176.70728 * 27 18 17 49 49 H 1.09000 * 109.59579 * 320.90263 * 28 15 12 50 50 H 1.08998 * 109.59301 * 81.33682 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1904 0.0005 5 6 4.1808 -0.0003 0.0064 6 6 3.4711 -1.1905 0.0007 7 6 4.1960 -2.5118 0.0013 8 6 3.7154 -3.3566 1.1828 9 6 4.4397 -4.6781 1.1831 10 8 5.2593 -4.9205 0.3227 11 7 4.1767 -5.5905 2.1396 12 6 4.8805 -6.8754 2.1395 13 1 5.7084 -6.9580 1.4353 14 6 4.0531 -8.1344 2.4083 15 6 5.0133 -7.6074 3.4744 16 6 4.4049 -6.9443 4.7141 17 6 4.1720 -8.0180 5.7839 18 7 5.4150 -8.7769 5.9715 19 6 5.9950 -8.8612 7.2092 20 1 7.0644 -8.9831 7.2973 21 6 5.2082 -8.7898 8.3506 22 7 3.9105 -8.9939 8.2692 23 14 5.9913 -8.4040 10.0021 24 1 5.9978 -6.9345 10.2157 25 1 5.2122 -9.0580 11.0841 26 1 7.3862 -8.9130 10.0194 27 6 6.0287 -9.4449 4.8167 28 6 6.2994 -8.4000 3.7274 29 7 2.1482 -1.1513 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 3.9907 2.1372 0.0009 34 1 5.2607 -0.0003 0.0111 35 1 5.2682 -2.3380 0.0912 36 1 3.9903 -3.0395 -0.9301 37 1 3.9210 -2.8289 2.1142 38 1 2.6431 -3.5304 1.0930 39 1 3.5215 -5.3964 2.8280 40 1 2.9853 -8.0065 2.5856 41 1 4.3366 -9.0451 1.8809 42 1 5.0903 -6.1886 5.0978 43 1 3.4550 -6.4790 4.4506 44 1 3.3785 -8.6911 5.4592 45 1 3.8889 -7.5426 6.7229 46 1 3.3606 -8.9436 9.0668 47 1 5.3503 -10.2064 4.4321 48 1 6.9676 -9.9087 5.1194 49 1 6.6067 -8.9007 2.8092 50 1 7.0870 -7.7230 4.0581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661068717.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:50 Heat of formation + Delta-G solvation = 26.017545 kcal Electronic energy + Delta-G solvation = -29111.569089 eV Core-core repulsion = 25138.880655 eV Total energy + Delta-G solvation = -3972.688434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.08579 -41.11792 -39.76498 -37.15827 -36.08969 -34.54349 -34.35750 -33.32531 -32.34743 -31.74291 -29.93205 -29.43150 -27.03094 -26.21424 -24.31137 -24.04187 -23.34776 -22.82633 -22.08683 -21.27011 -19.80901 -18.64911 -18.45688 -18.17743 -17.18284 -17.00228 -16.77701 -16.61192 -16.16092 -16.08985 -15.70772 -15.43904 -15.21379 -14.91237 -14.70866 -14.65951 -14.18185 -14.09025 -13.82044 -13.67841 -13.55437 -13.31527 -13.20955 -13.07804 -13.04378 -12.90359 -12.59762 -12.51705 -12.31204 -12.27935 -11.97808 -11.80951 -11.77700 -11.54896 -11.36188 -11.25861 -10.99066 -10.66853 -10.48331 -10.33414 -10.22220 -9.64719 -8.61777 -7.86090 -5.32156 -0.08218 0.08204 1.46506 1.47958 1.56431 1.56613 2.08448 2.51624 2.73330 2.92813 2.96421 3.15934 3.28328 3.46749 3.65391 3.72660 3.84302 3.88687 3.99281 4.06021 4.09369 4.13498 4.15144 4.23390 4.48571 4.53753 4.55363 4.62779 4.67191 4.71696 4.72035 4.83732 4.85950 4.91753 4.96482 4.97761 5.01438 5.08054 5.08842 5.10713 5.22977 5.31599 5.37946 5.49447 5.52728 5.55715 5.66264 5.79180 6.06224 6.41537 6.52016 7.12154 7.17064 7.21157 7.89242 8.40024 9.18718 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.001964 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.041815 B =14252.173822 C =15213.446852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.546 5.546 4 C 0.147 3.853 5 C -0.229 4.229 6 C 0.169 3.831 7 C -0.049 4.049 8 C -0.122 4.122 9 C 0.519 3.481 10 O -0.579 6.579 11 N -0.692 5.692 12 C 0.087 3.913 13 H 0.127 0.873 14 C -0.172 4.172 15 C -0.117 4.117 16 C -0.088 4.088 17 C 0.179 3.821 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.063 0.937 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.270 1.270 27 C 0.146 3.854 28 C -0.087 4.087 29 N -0.535 5.535 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.200 0.800 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.411 0.589 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.050 0.950 43 H 0.071 0.929 44 H -0.002 1.002 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.017 0.983 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 18.340 -18.547 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.262 5.262 4 C -0.018 4.018 5 C -0.250 4.250 6 C 0.023 3.977 7 C -0.087 4.087 8 C -0.162 4.162 9 C 0.307 3.693 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.019 4.019 13 H 0.144 0.856 14 C -0.210 4.210 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.053 3.947 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.080 0.920 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.195 1.195 27 C 0.020 3.980 28 C -0.126 4.126 29 N -0.251 5.251 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.217 0.783 34 H 0.192 0.808 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.248 0.752 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.754 18.164 -19.035 26.577 hybrid contribution 0.799 -0.130 1.540 1.740 sum -2.955 18.034 -17.496 25.299 Atomic orbital electron populations 1.20645 0.84198 1.04737 1.04652 1.23780 0.99403 0.83319 0.90095 1.68324 1.11406 1.30660 1.15809 1.23838 0.89226 1.00146 0.88559 1.23095 1.04420 0.93387 1.04099 1.21888 0.89606 0.96519 0.89658 1.20275 0.99695 0.89528 0.99194 1.21500 1.02190 0.91517 1.00975 1.21033 0.81963 0.86149 0.80134 1.90674 1.36411 1.80203 1.38652 1.45431 1.43021 1.15401 1.30320 1.21678 0.98731 0.81983 0.99517 0.85565 1.23601 0.97950 0.97796 1.01701 1.21797 0.98419 1.01647 0.89939 1.21527 0.99137 0.97710 0.94324 1.20561 0.86615 0.91196 0.96326 1.44245 1.27077 1.57394 1.04433 1.19500 0.91215 1.44523 0.84008 0.91962 1.25760 0.96281 1.01429 1.01015 1.70178 1.05563 1.53347 1.28720 0.85322 0.78011 0.77723 0.79738 1.21190 1.22182 1.19523 1.20987 0.96098 0.93147 0.87767 1.21520 0.94811 0.97412 0.98868 1.68089 1.10235 1.31021 1.15765 0.88741 0.88906 0.89155 0.78338 0.80775 0.88168 0.89484 0.87416 0.86997 0.75169 0.88283 0.87371 0.93142 0.91093 0.98348 0.92665 0.94105 0.96518 0.93003 0.90085 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.32 71.23 0.74 -0.30 16 2 C 0.30 5.51 7.64 138.75 1.06 6.57 16 3 N -0.55 -9.84 10.33 -187.84 -1.94 -11.78 16 4 C 0.15 1.91 11.31 84.71 0.96 2.87 16 5 C -0.23 -2.87 9.80 22.44 0.22 -2.65 16 6 C 0.17 2.81 6.20 42.56 0.26 3.07 16 7 C -0.05 -0.78 4.94 29.85 0.15 -0.63 16 8 C -0.12 -1.97 5.57 29.85 0.17 -1.81 16 9 C 0.52 11.85 7.83 87.66 0.69 12.53 16 10 O -0.58 -17.25 15.55 -3.02 -0.05 -17.30 16 11 N -0.69 -15.60 5.35 -442.76 -2.37 -17.97 16 12 C 0.09 2.28 6.14 44.94 0.28 2.56 16 13 H 0.13 3.53 7.40 -2.39 -0.02 3.51 16 14 C -0.17 -4.49 9.86 30.55 0.30 -4.18 16 15 C -0.12 -3.56 1.94 -52.17 -0.10 -3.66 16 16 C -0.09 -3.06 5.37 30.77 0.17 -2.90 16 17 C 0.18 8.33 5.40 86.43 0.47 8.80 16 18 N -0.61 -30.15 2.94 -698.89 -2.05 -32.20 16 19 C -0.26 -14.36 9.54 84.03 0.80 -13.56 16 20 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 21 C -0.05 -2.74 4.88 84.86 0.41 -2.32 16 22 N -0.93 -54.53 11.23 21.65 0.24 -54.28 16 23 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.15 5.95 6.51 86.43 0.56 6.51 16 28 C -0.09 -2.85 5.83 30.77 0.18 -2.67 16 29 N -0.54 -10.32 9.94 -176.03 -1.75 -12.07 16 30 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.17 1.17 8.01 -2.91 -0.02 1.14 16 35 H 0.10 1.45 7.90 -2.39 -0.02 1.44 16 36 H 0.09 1.59 8.10 -2.38 -0.02 1.57 16 37 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.11 1.72 7.98 -2.39 -0.02 1.70 16 39 H 0.41 7.89 7.12 -92.71 -0.66 7.23 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.05 6.75 -2.38 -0.02 2.04 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.05 2.94 5.93 -2.39 -0.01 2.93 16 46 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.05 2.10 7.92 -2.38 -0.02 2.08 16 49 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 50 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.77 406.22 1.70 -70.07 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.28 Total: 20.67 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 7.30 Total: 8.24 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -7.87 Total: -128.31 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.05 Total: -17.30 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.77 1.70 -70.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661068717.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.088 kcal (2) G-P(sol) polarization free energy of solvation -71.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds