Wall clock time and date at job start Wed Apr 1 2020 03:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30088 * 124.98195 * 2 1 4 4 C 1.35848 * 109.53320 * 180.02562 * 3 2 1 5 5 C 1.39720 * 133.50440 * 179.97438 * 4 3 2 6 6 C 1.37845 * 120.10532 * 180.32029 * 5 4 3 7 7 C 1.38324 * 120.72509 * 359.41379 * 6 5 4 8 8 C 1.39396 * 120.28550 * 0.59846 * 7 6 5 9 9 C 1.47533 * 120.25131 * 179.67674 * 8 7 6 10 10 O 1.21588 * 119.99663 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99866 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99786 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46822 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46988 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47547 * 179.97438 * 14 13 12 16 16 C 1.36942 * 119.99884 * 270.00406 * 15 14 13 17 17 H 1.08002 * 119.99823 * 144.85599 * 16 15 14 18 18 C 1.38808 * 119.99790 * 324.84733 * 16 15 14 19 19 N 1.31622 * 120.00029 * 157.16916 * 18 16 15 20 20 Si 1.86799 * 120.00106 * 337.17644 * 18 16 15 21 21 H 1.48498 * 109.47412 * 95.35070 * 20 18 16 22 22 H 1.48507 * 109.47171 * 215.35112 * 20 18 16 23 23 H 1.48498 * 109.47358 * 335.34846 * 20 18 16 24 24 C 1.46495 * 120.00223 * 89.99378 * 15 14 13 25 25 C 1.52993 * 109.47302 * 121.90397 * 24 15 14 26 26 C 1.52997 * 109.47446 * 241.90792 * 24 15 14 27 27 C 1.40189 * 119.49931 * 359.70023 * 8 7 6 28 28 N 1.36119 * 124.97413 * 180.02562 * 2 1 3 29 29 H 0.97001 * 126.31409 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47420 * 269.98055 * 1 2 3 31 31 H 1.09003 * 109.47255 * 29.97324 * 1 2 3 32 32 H 1.08998 * 109.47990 * 149.97403 * 1 2 3 33 33 H 1.07994 * 119.94839 * 0.04380 * 5 4 3 34 34 H 1.07996 * 119.63573 * 179.70212 * 6 5 4 35 35 H 1.08005 * 119.85602 * 180.29720 * 7 6 5 36 36 H 0.97005 * 119.99941 * 359.97438 * 11 9 8 37 37 H 1.08992 * 109.47074 * 299.99677 * 12 11 9 38 38 H 1.08999 * 109.47265 * 59.99794 * 12 11 9 39 39 H 1.09000 * 109.46724 * 299.99621 * 13 12 11 40 40 H 1.08999 * 109.47349 * 59.99869 * 13 12 11 41 41 H 1.09006 * 109.46955 * 299.99767 * 14 13 12 42 42 H 1.08999 * 109.47291 * 59.99701 * 14 13 12 43 43 H 0.97000 * 120.00444 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.46902 * 1.90454 * 24 15 14 45 45 H 1.09004 * 109.46951 * 65.33186 * 25 24 15 46 46 H 1.08998 * 109.47808 * 185.33262 * 25 24 15 47 47 H 1.08999 * 109.47266 * 305.33332 * 25 24 15 48 48 H 1.08996 * 109.47450 * 55.18678 * 26 24 15 49 49 H 1.09005 * 109.47264 * 175.18564 * 26 24 15 50 50 H 1.09004 * 109.46925 * 295.18729 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5622 0.7040 -0.0006 5 6 4.7592 1.4246 -0.0013 6 6 5.9666 0.7595 -0.0084 7 6 6.0120 -0.6230 -0.0028 8 6 4.8320 -1.3651 -0.0023 9 6 4.8813 -2.8396 -0.0035 10 8 3.8491 -3.4823 -0.0036 11 7 6.0703 -3.4741 -0.0045 12 6 6.1192 -4.9382 -0.0063 13 6 7.5780 -5.3997 -0.0077 14 6 7.6291 -6.9289 -0.0102 15 7 9.0258 -7.3709 -0.0123 16 6 9.6775 -7.5755 -1.1992 17 1 10.7287 -7.3433 -1.2850 18 6 8.9869 -8.0815 -2.2918 19 7 9.4372 -7.8700 -3.5104 20 14 7.4183 -9.0622 -2.0328 21 1 6.2443 -8.1626 -2.1655 22 1 7.3341 -10.1394 -3.0517 23 1 7.4295 -9.6646 -0.6755 24 6 9.7255 -7.5938 1.2554 25 6 10.2286 -9.0374 1.3132 26 6 10.9135 -6.6351 1.3577 27 6 3.5980 -0.6997 -0.0012 28 7 2.2872 -1.1154 -0.0005 29 1 1.9760 -2.0341 -0.0006 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3635 -0.8897 -0.5142 33 1 4.7385 2.5043 -0.0007 34 1 6.8872 1.3241 -0.0138 35 1 6.9658 -1.1296 -0.0036 36 1 6.8937 -2.9612 -0.0048 37 1 5.6181 -5.3195 0.8834 38 1 5.6176 -5.3175 -0.8965 39 1 8.0787 -5.0184 -0.8977 40 1 8.0800 -5.0205 0.8823 41 1 7.1282 -7.3106 0.8795 42 1 7.1272 -7.3078 -0.9005 43 1 8.9544 -8.2232 -4.2740 44 1 9.0412 -7.4140 2.0845 45 1 10.9838 -9.1901 0.5422 46 1 10.6654 -9.2311 2.2929 47 1 9.3952 -9.7197 1.1457 48 1 10.5653 -5.6101 1.2309 49 1 11.3827 -6.7411 2.3358 50 1 11.6390 -6.8713 0.5792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664547984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:52 Heat of formation + Delta-G solvation = 45.997984 kcal Electronic energy + Delta-G solvation = -29533.876703 eV Core-core repulsion = 25562.054685 eV Total energy + Delta-G solvation = -3971.822017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.47725 -39.73419 -37.43623 -37.13069 -35.23694 -33.36369 -32.65709 -31.97819 -31.62172 -30.53823 -29.11758 -27.94749 -26.35490 -25.58760 -23.89230 -22.97755 -22.56878 -21.37510 -21.19188 -20.47800 -19.45868 -18.20052 -17.76504 -16.64940 -16.53334 -15.95971 -15.71076 -15.64636 -15.31748 -15.05028 -14.80817 -14.39857 -13.99765 -13.86277 -13.54746 -13.44332 -13.27324 -13.10280 -13.03894 -12.40005 -12.32407 -12.23652 -12.22237 -11.93305 -11.85075 -11.82425 -11.42806 -11.22628 -10.92203 -10.84617 -10.76688 -10.55166 -10.47198 -10.42646 -9.99601 -9.94144 -9.70524 -9.41135 -9.10030 -8.64131 -8.51145 -8.42242 -6.89367 -6.00930 -3.39812 0.30275 1.20730 2.20629 2.67110 2.93906 3.11388 3.28917 3.46163 3.49683 3.65761 3.77779 4.33007 4.50098 4.58297 4.60233 4.80260 4.81113 4.90320 5.04822 5.08519 5.13601 5.29519 5.41689 5.42483 5.44580 5.49661 5.66210 5.75064 5.77760 5.96057 5.98095 6.00181 6.09125 6.13348 6.13811 6.16458 6.27070 6.29002 6.45193 6.49893 6.52529 6.60559 6.67190 6.70810 6.85648 7.05687 7.10036 7.11934 7.45515 7.56622 8.02969 8.10462 8.36942 8.97611 9.70990 10.10164 11.14806 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002295 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.458617 B =12198.454173 C =12898.416944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.492 5.492 4 C 0.036 3.964 5 C -0.038 4.038 6 C -0.137 4.137 7 C -0.062 4.062 8 C -0.128 4.128 9 C 0.558 3.442 10 O -0.556 6.556 11 N -0.715 5.715 12 C 0.117 3.883 13 C -0.146 4.146 14 C 0.142 3.858 15 N -0.601 5.601 16 C -0.259 4.259 17 H 0.081 0.919 18 C 0.034 3.966 19 N -0.901 5.901 20 Si 0.874 3.126 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.166 3.834 25 C -0.152 4.152 26 C -0.153 4.153 27 C 0.100 3.900 28 N -0.582 5.582 29 H 0.433 0.567 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.262 0.738 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 16.342 9.824 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 N -0.214 5.214 4 C -0.082 4.082 5 C -0.057 4.057 6 C -0.157 4.157 7 C -0.082 4.082 8 C -0.134 4.134 9 C 0.346 3.654 10 O -0.436 6.436 11 N -0.365 5.365 12 C -0.006 4.006 13 C -0.187 4.187 14 C 0.016 3.984 15 N -0.323 5.323 16 C -0.387 4.387 17 H 0.099 0.901 18 C -0.166 4.166 19 N -0.542 5.542 20 Si 0.705 3.295 21 H -0.215 1.215 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.060 3.940 25 C -0.211 4.211 26 C -0.212 4.212 27 C -0.013 4.013 28 N -0.193 5.193 29 H 0.275 0.725 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.278 16.656 9.646 22.830 hybrid contribution -0.292 -1.671 -0.121 1.700 sum -12.570 14.985 9.525 21.755 Atomic orbital electron populations 1.20395 0.83981 1.04866 1.04378 1.23729 0.95898 0.81051 0.97958 1.70468 1.00493 1.27513 1.22888 1.19063 0.92397 0.89837 1.06923 1.20464 0.88976 1.00025 0.96271 1.20846 0.97743 0.93830 1.03325 1.21193 0.96409 0.94314 0.96314 1.18917 0.91041 0.92609 1.10840 1.18160 0.84007 0.86877 0.76381 1.90682 1.33509 1.67955 1.51479 1.46005 1.07940 1.08533 1.74019 1.21535 0.99136 0.77875 1.02061 1.22441 0.92850 1.00495 1.02888 1.21068 0.87092 0.90881 0.99395 1.44239 1.09041 1.76734 1.02291 1.18677 0.96297 1.37556 0.86194 0.90139 1.25403 0.97788 0.98186 0.95244 1.69866 1.41066 1.45696 0.97618 0.87004 0.84095 0.80759 0.77645 1.21489 1.23195 1.19458 1.20395 0.92842 0.92972 0.87820 1.22118 1.01342 0.98069 0.99568 1.22158 0.99606 0.99762 0.99656 1.18568 0.84915 0.94596 1.03270 1.43169 1.04609 1.10783 1.60777 0.72485 0.89215 0.88425 0.89957 0.84767 0.84375 0.84585 0.76298 0.91716 0.91442 0.90414 0.92073 0.94138 0.92786 0.92787 0.93298 0.92069 0.94482 0.93492 0.93463 0.94381 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.28 2.96 8.08 -154.77 -1.25 1.71 16 3 N -0.49 -6.27 11.28 -8.23 -0.09 -6.36 16 4 C 0.04 0.46 7.22 -84.72 -0.61 -0.15 16 5 C -0.04 -0.38 10.09 -39.17 -0.40 -0.77 16 6 C -0.14 -1.18 9.99 -39.69 -0.40 -1.57 16 7 C -0.06 -0.61 9.53 -39.12 -0.37 -0.98 16 8 C -0.13 -1.62 5.88 -104.94 -0.62 -2.24 16 9 C 0.56 8.15 7.76 -12.47 -0.10 8.06 16 10 O -0.56 -9.53 15.29 5.29 0.08 -9.45 16 11 N -0.71 -9.57 5.51 -61.35 -0.34 -9.91 16 12 C 0.12 1.82 5.67 -4.04 -0.02 1.80 16 13 C -0.15 -2.45 5.65 -26.73 -0.15 -2.61 16 14 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 15 N -0.60 -13.18 2.06 -165.67 -0.34 -13.53 16 16 C -0.26 -6.76 8.74 -15.06 -0.13 -6.89 16 17 H 0.08 2.29 7.17 -52.49 -0.38 1.91 16 18 C 0.03 0.94 5.31 -17.43 -0.09 0.85 16 19 N -0.90 -26.77 13.97 55.49 0.78 -25.99 16 20 Si 0.87 21.81 24.97 -169.99 -4.24 17.57 16 21 H -0.29 -6.99 6.66 56.52 0.38 -6.62 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 24 C 0.17 3.09 3.36 -67.94 -0.23 2.87 16 25 C -0.15 -2.78 9.04 37.15 0.34 -2.44 16 26 C -0.15 -2.59 9.11 37.16 0.34 -2.25 16 27 C 0.10 1.33 6.88 -83.76 -0.58 0.75 16 28 N -0.58 -6.84 6.00 -7.81 -0.05 -6.89 16 29 H 0.43 4.79 7.72 -40.82 -0.32 4.48 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 1.00 6.39 -52.48 -0.34 0.66 16 36 H 0.40 4.33 6.50 -40.82 -0.27 4.06 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.74 7.91 -51.93 -0.41 0.33 16 42 H 0.05 1.23 2.97 -51.93 -0.15 1.07 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.05 0.83 7.78 -51.93 -0.40 0.42 16 45 H 0.06 1.21 7.80 -51.93 -0.40 0.80 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 1.07 7.25 -51.93 -0.38 0.69 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -33.60 402.76 -9.75 -43.34 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.70 Total: 6.25 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.91 Total: -1.10 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.04 Total: -62.68 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.24 Total: 17.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.60 -9.75 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664547984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.340 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds