Wall clock time and date at job start Wed Apr 1 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30088 * 124.98195 * 2 1 4 4 C 1.35848 * 109.53320 * 180.02562 * 3 2 1 5 5 C 1.39720 * 133.50440 * 179.97438 * 4 3 2 6 6 C 1.37845 * 120.10532 * 180.32029 * 5 4 3 7 7 C 1.38324 * 120.72509 * 359.41379 * 6 5 4 8 8 C 1.39396 * 120.28550 * 0.59846 * 7 6 5 9 9 C 1.47533 * 120.25131 * 179.67674 * 8 7 6 10 10 O 1.21588 * 119.99663 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99866 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99786 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46822 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46988 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47547 * 179.97438 * 14 13 12 16 16 C 1.36942 * 119.99884 * 270.00406 * 15 14 13 17 17 H 1.08002 * 119.99823 * 144.85599 * 16 15 14 18 18 C 1.38808 * 119.99790 * 324.84733 * 16 15 14 19 19 N 1.31622 * 120.00029 * 157.16916 * 18 16 15 20 20 Si 1.86799 * 120.00106 * 337.17644 * 18 16 15 21 21 H 1.48498 * 109.47412 * 95.35070 * 20 18 16 22 22 H 1.48507 * 109.47171 * 215.35112 * 20 18 16 23 23 H 1.48498 * 109.47358 * 335.34846 * 20 18 16 24 24 C 1.46495 * 120.00223 * 89.99378 * 15 14 13 25 25 C 1.52993 * 109.47302 * 121.90397 * 24 15 14 26 26 C 1.52997 * 109.47446 * 241.90792 * 24 15 14 27 27 C 1.40189 * 119.49931 * 359.70023 * 8 7 6 28 28 N 1.36119 * 124.97413 * 180.02562 * 2 1 3 29 29 H 0.97001 * 126.31409 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.47420 * 269.98055 * 1 2 3 31 31 H 1.09003 * 109.47255 * 29.97324 * 1 2 3 32 32 H 1.08998 * 109.47990 * 149.97403 * 1 2 3 33 33 H 1.07994 * 119.94839 * 0.04380 * 5 4 3 34 34 H 1.07996 * 119.63573 * 179.70212 * 6 5 4 35 35 H 1.08005 * 119.85602 * 180.29720 * 7 6 5 36 36 H 0.97005 * 119.99941 * 359.97438 * 11 9 8 37 37 H 1.08992 * 109.47074 * 299.99677 * 12 11 9 38 38 H 1.08999 * 109.47265 * 59.99794 * 12 11 9 39 39 H 1.09000 * 109.46724 * 299.99621 * 13 12 11 40 40 H 1.08999 * 109.47349 * 59.99869 * 13 12 11 41 41 H 1.09006 * 109.46955 * 299.99767 * 14 13 12 42 42 H 1.08999 * 109.47291 * 59.99701 * 14 13 12 43 43 H 0.97000 * 120.00444 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.46902 * 1.90454 * 24 15 14 45 45 H 1.09004 * 109.46951 * 65.33186 * 25 24 15 46 46 H 1.08998 * 109.47808 * 185.33262 * 25 24 15 47 47 H 1.08999 * 109.47266 * 305.33332 * 25 24 15 48 48 H 1.08996 * 109.47450 * 55.18678 * 26 24 15 49 49 H 1.09005 * 109.47264 * 175.18564 * 26 24 15 50 50 H 1.09004 * 109.46925 * 295.18729 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5622 0.7040 -0.0006 5 6 4.7592 1.4246 -0.0013 6 6 5.9666 0.7595 -0.0084 7 6 6.0120 -0.6230 -0.0028 8 6 4.8320 -1.3651 -0.0023 9 6 4.8813 -2.8396 -0.0035 10 8 3.8491 -3.4823 -0.0036 11 7 6.0703 -3.4741 -0.0045 12 6 6.1192 -4.9382 -0.0063 13 6 7.5780 -5.3997 -0.0077 14 6 7.6291 -6.9289 -0.0102 15 7 9.0258 -7.3709 -0.0123 16 6 9.6775 -7.5755 -1.1992 17 1 10.7287 -7.3433 -1.2850 18 6 8.9869 -8.0815 -2.2918 19 7 9.4372 -7.8700 -3.5104 20 14 7.4183 -9.0622 -2.0328 21 1 6.2443 -8.1626 -2.1655 22 1 7.3341 -10.1394 -3.0517 23 1 7.4295 -9.6646 -0.6755 24 6 9.7255 -7.5938 1.2554 25 6 10.2286 -9.0374 1.3132 26 6 10.9135 -6.6351 1.3577 27 6 3.5980 -0.6997 -0.0012 28 7 2.2872 -1.1154 -0.0005 29 1 1.9760 -2.0341 -0.0006 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3635 -0.8897 -0.5142 33 1 4.7385 2.5043 -0.0007 34 1 6.8872 1.3241 -0.0138 35 1 6.9658 -1.1296 -0.0036 36 1 6.8937 -2.9612 -0.0048 37 1 5.6181 -5.3195 0.8834 38 1 5.6176 -5.3175 -0.8965 39 1 8.0787 -5.0184 -0.8977 40 1 8.0800 -5.0205 0.8823 41 1 7.1282 -7.3106 0.8795 42 1 7.1272 -7.3078 -0.9005 43 1 8.9544 -8.2232 -4.2740 44 1 9.0412 -7.4140 2.0845 45 1 10.9838 -9.1901 0.5422 46 1 10.6654 -9.2311 2.2929 47 1 9.3952 -9.7197 1.1457 48 1 10.5653 -5.6101 1.2309 49 1 11.3827 -6.7411 2.3358 50 1 11.6390 -6.8713 0.5792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664547984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:51 Heat of formation + Delta-G solvation = 24.161433 kcal Electronic energy + Delta-G solvation = -29534.823606 eV Core-core repulsion = 25562.054685 eV Total energy + Delta-G solvation = -3972.768921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.29484 -40.83498 -38.80906 -38.19924 -36.51133 -34.34058 -34.21334 -33.58584 -32.31401 -31.64228 -30.52875 -28.63072 -27.77055 -27.16372 -25.38624 -24.17999 -23.41889 -22.71819 -21.98372 -21.54076 -21.15942 -19.12928 -18.64529 -18.34987 -17.49983 -17.34179 -16.97389 -16.80487 -16.44580 -16.30512 -16.05288 -15.45150 -15.22036 -15.04292 -14.87879 -14.77374 -14.23806 -14.10750 -14.02585 -13.86337 -13.56683 -13.51211 -13.33232 -13.08387 -12.89694 -12.88432 -12.66973 -12.59193 -12.54532 -12.35346 -12.16739 -12.00329 -11.78721 -11.69116 -11.49764 -11.39262 -11.19681 -10.99520 -10.55238 -10.27095 -9.45036 -9.25449 -8.74556 -8.14796 -5.47651 -0.52668 0.39957 1.28969 1.34367 1.40857 1.49382 1.88930 1.97369 2.02348 2.43790 2.80201 3.07281 3.09781 3.34740 3.48556 3.75543 3.87945 4.04103 4.13074 4.16688 4.19001 4.30382 4.31085 4.39046 4.49931 4.53442 4.58775 4.65830 4.70923 4.74314 4.76077 4.81183 4.90873 4.97325 5.00661 5.09586 5.16018 5.20545 5.21240 5.24254 5.28519 5.34102 5.37530 5.42324 5.59068 5.66005 5.75799 6.01309 6.26745 6.29073 6.41406 6.74662 7.03012 7.06198 7.72695 8.12305 9.05360 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002295 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.458617 B =12198.454173 C =12898.416944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.521 5.521 4 C 0.011 3.989 5 C -0.040 4.040 6 C -0.127 4.127 7 C -0.053 4.053 8 C -0.152 4.152 9 C 0.556 3.444 10 O -0.589 6.589 11 N -0.706 5.706 12 C 0.128 3.872 13 C -0.127 4.127 14 C 0.133 3.867 15 N -0.611 5.611 16 C -0.226 4.226 17 H 0.050 0.950 18 C -0.023 4.023 19 N -0.952 5.952 20 Si 0.930 3.070 21 H -0.282 1.282 22 H -0.319 1.319 23 H -0.258 1.258 24 C 0.156 3.844 25 C -0.148 4.148 26 C -0.144 4.144 27 C 0.073 3.927 28 N -0.588 5.588 29 H 0.433 0.567 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.415 0.585 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.258 0.742 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 17.779 12.504 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.013 3.987 3 N -0.242 5.242 4 C -0.107 4.107 5 C -0.060 4.060 6 C -0.147 4.147 7 C -0.073 4.073 8 C -0.158 4.158 9 C 0.345 3.655 10 O -0.471 6.471 11 N -0.357 5.357 12 C 0.004 3.996 13 C -0.167 4.167 14 C 0.007 3.993 15 N -0.334 5.334 16 C -0.356 4.356 17 H 0.067 0.933 18 C -0.218 4.218 19 N -0.597 5.597 20 Si 0.761 3.239 21 H -0.210 1.210 22 H -0.249 1.249 23 H -0.182 1.182 24 C 0.051 3.949 25 C -0.207 4.207 26 C -0.203 4.203 27 C -0.041 4.041 28 N -0.199 5.199 29 H 0.275 0.725 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.172 0.828 34 H 0.194 0.806 35 H 0.179 0.821 36 H 0.253 0.747 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.427 18.117 12.384 25.220 hybrid contribution -0.168 -2.022 -0.857 2.202 sum -12.595 16.095 11.528 23.464 Atomic orbital electron populations 1.20608 0.80891 1.06095 1.05787 1.24583 0.97510 0.80303 0.96315 1.70469 1.00873 1.28471 1.24433 1.19528 0.93287 0.90046 1.07807 1.20876 0.88658 1.01162 0.95276 1.21269 0.98629 0.93448 1.01376 1.21578 0.96368 0.95006 0.94340 1.18907 0.92066 0.91431 1.13395 1.18504 0.83616 0.87787 0.75593 1.90655 1.34613 1.68822 1.53041 1.45815 1.08450 1.07683 1.73757 1.21266 0.97907 0.79149 1.01311 1.22145 0.93588 0.98061 1.02908 1.21168 0.85835 0.92989 0.99303 1.44402 1.09683 1.77116 1.02199 1.18525 0.95011 1.34566 0.87527 0.93282 1.25897 1.00836 0.99983 0.95111 1.69983 1.43114 1.48213 0.98401 0.86083 0.81414 0.79035 0.77345 1.21029 1.24863 1.18229 1.20703 0.93802 0.93503 0.86873 1.22076 1.00209 0.97589 1.00809 1.22050 0.98359 0.99292 1.00609 1.18907 0.85598 0.95231 1.04340 1.43278 1.04596 1.11045 1.61010 0.72548 0.87561 0.87552 0.88290 0.82807 0.80613 0.82077 0.74695 0.90911 0.93893 0.92742 0.89555 0.91479 0.95519 0.93318 0.90247 0.94663 0.90804 0.94837 0.93209 0.91015 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.51 71.24 0.75 -0.03 16 2 C 0.28 5.85 8.08 137.90 1.11 6.97 16 3 N -0.52 -13.16 11.28 -179.97 -2.03 -15.19 16 4 C 0.01 0.28 7.22 39.41 0.28 0.56 16 5 C -0.04 -0.74 10.09 22.54 0.23 -0.51 16 6 C -0.13 -1.79 9.99 22.20 0.22 -1.57 16 7 C -0.05 -0.91 9.53 22.57 0.22 -0.69 16 8 C -0.15 -3.73 5.88 -20.07 -0.12 -3.85 16 9 C 0.56 15.94 7.76 86.69 0.67 16.62 16 10 O -0.59 -20.37 15.29 -3.99 -0.06 -20.43 16 11 N -0.71 -17.88 5.51 -466.28 -2.57 -20.45 16 12 C 0.13 3.80 5.67 86.38 0.49 4.29 16 13 C -0.13 -4.01 5.65 30.60 0.17 -3.84 16 14 C 0.13 5.09 4.49 86.38 0.39 5.47 16 15 N -0.61 -25.93 2.06 -678.06 -1.40 -27.33 16 16 C -0.23 -11.94 8.74 84.03 0.73 -11.20 16 17 H 0.05 2.88 7.17 -2.91 -0.02 2.86 16 18 C -0.02 -1.30 5.31 84.86 0.45 -0.85 16 19 N -0.95 -58.65 13.97 21.65 0.30 -58.35 16 20 Si 0.93 46.05 24.97 68.60 1.71 47.77 16 21 H -0.28 -13.60 6.66 99.48 0.66 -12.93 16 22 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 24 C 0.16 5.35 3.36 44.99 0.15 5.51 16 25 C -0.15 -5.06 9.04 71.98 0.65 -4.41 16 26 C -0.14 -4.49 9.11 71.98 0.66 -3.84 16 27 C 0.07 1.93 6.88 39.26 0.27 2.20 16 28 N -0.59 -14.03 6.00 -178.61 -1.07 -15.10 16 29 H 0.43 9.91 7.72 -92.71 -0.72 9.19 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.16 1.81 6.39 -2.91 -0.02 1.79 16 36 H 0.41 7.99 6.50 -92.70 -0.60 7.39 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.22 7.91 -2.38 -0.02 2.20 16 42 H 0.03 1.19 2.97 -2.39 -0.01 1.18 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.08 2.30 7.78 -2.39 -0.02 2.28 16 45 H 0.03 1.36 7.80 -2.39 -0.02 1.34 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 50 H 0.03 1.08 7.25 -2.39 -0.02 1.06 16 Total: -1.00 -76.61 402.76 1.82 -74.79 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.39 Total: 23.47 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 7.33 Total: 10.83 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -6.77 Total: -136.42 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.71 Total: 47.77 kcal Total: -76.61 1.82 -74.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664547984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.952 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds