Wall clock time and date at job start Wed Apr 1 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.12408 * 2 1 4 4 C 1.32312 * 120.81480 * 180.02562 * 3 2 1 5 5 C 1.38621 * 119.10505 * 359.97438 * 4 3 2 6 6 C 1.38579 * 118.40033 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.44545 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46849 * 125.00256 * 7 6 5 9 9 C 1.50695 * 109.47152 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00165 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00340 * 180.02562 * 9 8 7 12 12 C 1.46491 * 120.00311 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.32466 * 35.35915 * 12 11 9 14 14 C 1.53033 * 109.32541 * 154.99728 * 12 11 9 15 15 C 1.53970 * 108.83248 * 175.50142 * 14 12 11 16 16 H 1.08996 * 112.99570 * 169.01207 * 15 14 12 17 17 C 1.55430 * 106.41363 * 293.82649 * 15 14 12 18 18 C 1.55172 * 100.35443 * 74.23564 * 17 15 14 19 19 H 1.09001 * 112.48748 * 162.66143 * 18 17 15 20 20 C 1.53883 * 107.26510 * 286.72621 * 18 17 15 21 21 N 1.47795 * 104.25324 * 40.54638 * 18 17 15 22 22 C 1.36934 * 125.85589 * 153.53843 * 21 18 17 23 23 H 1.08007 * 119.99995 * 5.12295 * 22 21 18 24 24 C 1.38813 * 120.00253 * 185.12428 * 22 21 18 25 25 N 1.31614 * 119.99559 * 352.98467 * 24 22 21 26 26 Si 1.86801 * 120.00068 * 172.98093 * 24 22 21 27 27 H 1.48501 * 109.46815 * 275.00924 * 26 24 22 28 28 H 1.48495 * 109.47038 * 35.01141 * 26 24 22 29 29 H 1.48502 * 109.46969 * 155.00828 * 26 24 22 30 30 C 1.47082 * 108.28897 * 333.80737 * 21 18 17 31 31 N 1.31787 * 119.11804 * 180.30094 * 2 1 3 32 32 H 1.08995 * 109.47396 * 89.99772 * 1 2 3 33 33 H 1.09004 * 109.47597 * 210.00177 * 1 2 3 34 34 H 1.09004 * 109.47196 * 330.00209 * 1 2 3 35 35 H 1.08004 * 120.44985 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.79774 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47406 * 5.00348 * 7 6 5 38 38 H 1.08994 * 109.47253 * 244.99965 * 7 6 5 39 39 H 1.08998 * 109.47432 * 59.99496 * 8 7 6 40 40 H 1.09003 * 109.47172 * 299.99944 * 8 7 6 41 41 H 0.97001 * 119.99221 * 359.97438 * 11 9 8 42 42 H 1.09004 * 109.57484 * 55.70166 * 14 12 11 43 43 H 1.08995 * 109.69066 * 295.37351 * 14 12 11 44 44 H 1.09001 * 111.24015 * 316.46026 * 17 15 14 45 45 H 1.09000 * 111.23488 * 192.01173 * 17 15 14 46 46 H 1.08996 * 109.53309 * 185.71863 * 20 18 17 47 47 H 1.09002 * 109.52885 * 305.94390 * 20 18 17 48 48 H 0.97009 * 120.00035 * 179.97438 * 25 24 22 49 49 H 1.08994 * 109.97797 * 120.19181 * 30 21 18 50 50 H 1.09000 * 109.97503 * 241.47539 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1808 -0.0003 -0.0005 6 6 3.4711 -1.1906 -0.0005 7 6 4.1960 -2.5118 0.0001 8 6 3.7153 -3.3566 1.1817 9 6 4.4406 -4.6775 1.1827 10 8 5.2607 -4.9197 0.3228 11 7 4.1770 -5.5904 2.1387 12 6 4.8817 -6.8747 2.1394 13 1 5.9048 -6.7250 1.7944 14 6 4.9044 -7.4391 3.5616 15 6 5.5460 -8.8384 3.5308 16 1 5.7710 -9.2256 4.5245 17 6 4.5775 -9.7481 2.7244 18 6 4.8515 -9.2397 1.2842 19 1 4.5028 -9.9370 0.5225 20 6 4.1935 -7.8546 1.1558 21 7 6.3156 -9.0419 1.2405 22 6 7.0996 -9.0990 0.1193 23 1 6.6442 -9.2215 -0.8524 24 6 8.4796 -8.9994 0.2315 25 7 9.0262 -8.7126 1.3938 26 14 9.5606 -9.2725 -1.2673 27 1 9.8212 -10.7253 -1.4315 28 1 8.8714 -8.7535 -2.4759 29 1 10.8486 -8.5559 -1.0858 30 6 6.7869 -8.7798 2.6089 31 7 2.1483 -1.1513 -0.0060 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 3.9907 2.1373 -0.0009 36 1 5.2608 -0.0003 -0.0005 37 1 5.2682 -2.3379 0.0901 38 1 3.9903 -3.0394 -0.9312 39 1 2.6430 -3.5304 1.0918 40 1 3.9209 -2.8289 2.1131 41 1 3.5208 -5.3968 2.8263 42 1 3.8853 -7.5129 3.9415 43 1 5.4884 -6.7837 4.2076 44 1 3.5408 -9.5753 3.0134 45 1 4.8442 -10.7997 2.8293 46 1 4.2759 -7.5059 0.1264 47 1 3.1422 -7.9233 1.4354 48 1 9.9907 -8.6434 1.4724 49 1 7.5101 -9.5394 2.9056 50 1 7.2418 -7.7907 2.6630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672159726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:55 Heat of formation + Delta-G solvation = 31.171739 kcal Electronic energy + Delta-G solvation = -30181.100001 eV Core-core repulsion = 26208.635069 eV Total energy + Delta-G solvation = -3972.464931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.36724 -39.96668 -38.66938 -35.35187 -34.44014 -33.68613 -32.79081 -31.73531 -30.65759 -29.55714 -28.81904 -28.24282 -25.88290 -25.28127 -23.48824 -23.10274 -22.26566 -21.28728 -20.00843 -19.37981 -18.57723 -17.86297 -17.10094 -16.91889 -16.17062 -15.83869 -15.61860 -15.41594 -15.27025 -14.56117 -14.42331 -13.98424 -13.67847 -13.55692 -13.32645 -13.25390 -12.91014 -12.73248 -12.67496 -12.45716 -12.20610 -11.97353 -11.80984 -11.75096 -11.56366 -11.38818 -11.20030 -11.10494 -10.73885 -10.69757 -10.65804 -10.46928 -9.94884 -9.86347 -9.71182 -9.68565 -9.63548 -9.49186 -9.39059 -9.25418 -8.51699 -8.48218 -6.74218 -5.62519 -2.93199 0.62092 0.78598 2.98444 3.36304 3.48201 3.50521 3.53102 3.54887 3.63242 3.81370 4.22442 4.59278 4.64036 4.77463 4.91790 4.97350 5.05225 5.10769 5.18766 5.22335 5.23323 5.26867 5.42066 5.51557 5.56490 5.59743 5.62656 5.64161 5.83356 5.87900 5.92106 5.93040 6.07914 6.09874 6.13888 6.16660 6.18316 6.25136 6.58910 6.64850 6.72322 6.75970 6.90182 6.91737 7.01694 7.10606 7.62357 7.68361 7.83535 7.86851 7.91272 8.33958 8.61208 9.31473 9.92094 10.58740 11.49973 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.002477 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.176181 B =11299.188894 C =12570.375740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.317 3.683 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.232 4.232 6 C 0.187 3.813 7 C -0.058 4.058 8 C -0.130 4.130 9 C 0.505 3.495 10 O -0.525 6.525 11 N -0.728 5.728 12 C 0.143 3.857 13 H 0.110 0.890 14 C -0.108 4.108 15 C -0.119 4.119 16 H 0.080 0.920 17 C -0.128 4.128 18 C 0.156 3.844 19 H 0.064 0.936 20 C -0.131 4.131 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.922 5.922 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.282 1.282 29 H -0.292 1.292 30 C 0.181 3.819 31 N -0.516 5.516 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.390 0.610 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.039 0.961 48 H 0.250 0.750 49 H 0.045 0.955 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.705 15.421 4.038 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.254 4.254 6 C 0.041 3.959 7 C -0.096 4.096 8 C -0.170 4.170 9 C 0.290 3.710 10 O -0.400 6.400 11 N -0.378 5.378 12 C 0.040 3.960 13 H 0.128 0.872 14 C -0.146 4.146 15 C -0.139 4.139 16 H 0.099 0.901 17 C -0.167 4.167 18 C 0.048 3.952 19 H 0.082 0.918 20 C -0.172 4.172 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.570 5.570 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.208 1.208 29 H -0.219 1.219 30 C 0.057 3.943 31 N -0.232 5.232 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.185 0.815 36 H 0.167 0.833 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.223 0.777 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.825 15.277 3.330 22.246 hybrid contribution 1.314 0.146 -0.429 1.390 sum -14.510 15.423 2.901 21.374 Atomic orbital electron populations 1.20565 0.85738 1.04140 1.03900 1.23286 0.98200 0.83391 0.90147 1.68253 1.10222 1.30543 1.15314 1.23231 0.89668 0.98660 0.89820 1.22835 1.03218 0.94114 1.05226 1.21818 0.89509 0.96023 0.88527 1.20385 0.99446 0.89545 1.00229 1.21531 1.02121 0.93851 0.99530 1.20491 0.83085 0.85482 0.81897 1.90807 1.33688 1.79088 1.36465 1.46188 1.43872 1.17529 1.30191 1.21458 0.98892 0.80875 0.94785 0.87201 1.21887 0.99766 0.97446 0.95532 1.22828 0.98331 0.93543 0.99164 0.90149 1.22980 0.97635 0.99040 0.96996 1.21512 0.86357 0.92851 0.94496 0.91826 1.22895 0.97211 0.97999 0.99132 1.44604 1.00369 1.83044 1.03938 1.18999 0.87716 1.42531 0.85554 0.90626 1.24748 0.96523 1.02129 0.96876 1.69952 1.09826 1.54633 1.22556 0.86193 0.80168 0.77568 0.82258 1.21751 1.20790 1.21863 1.21273 0.90384 1.00347 0.82336 1.68099 1.09636 1.30469 1.14968 0.89649 0.89542 0.89699 0.81458 0.83283 0.88714 0.88276 0.88124 0.89463 0.77695 0.92806 0.92156 0.92273 0.91862 0.92044 0.94242 0.93934 0.93677 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.32 36.01 0.37 -0.23 16 2 C 0.32 3.33 7.64 -157.19 -1.20 2.13 16 3 N -0.53 -5.54 10.33 -10.72 -0.11 -5.65 16 4 C 0.15 1.31 11.31 -17.20 -0.19 1.11 16 5 C -0.23 -2.07 9.80 -39.31 -0.39 -2.45 16 6 C 0.19 2.01 6.20 -82.25 -0.51 1.50 16 7 C -0.06 -0.66 4.94 -27.88 -0.14 -0.79 16 8 C -0.13 -1.44 5.57 -27.88 -0.16 -1.60 16 9 C 0.51 7.91 7.78 -10.99 -0.09 7.82 16 10 O -0.53 -11.01 15.65 5.56 0.09 -10.92 16 11 N -0.73 -10.55 5.11 -52.79 -0.27 -10.82 16 12 C 0.14 2.59 2.08 -66.88 -0.14 2.45 16 13 H 0.11 2.63 5.51 -51.93 -0.29 2.34 16 14 C -0.11 -1.69 5.01 -26.21 -0.13 -1.82 16 15 C -0.12 -2.12 4.26 -87.93 -0.37 -2.50 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.13 -2.19 6.18 -24.29 -0.15 -2.34 16 18 C 0.16 3.19 4.25 -65.61 -0.28 2.91 16 19 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 20 C -0.13 -2.46 5.45 -25.24 -0.14 -2.60 16 21 N -0.60 -14.97 2.46 -161.37 -0.40 -15.37 16 22 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 23 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 24 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 25 N -0.92 -27.50 10.40 55.49 0.58 -26.92 16 26 Si 0.91 22.96 29.56 -169.99 -5.02 17.93 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 30 C 0.18 4.32 4.12 -2.83 -0.01 4.30 16 31 N -0.52 -5.89 9.94 -6.99 -0.07 -5.96 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.15 0.99 8.01 -52.49 -0.42 0.57 16 37 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 38 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.10 1.04 7.99 -51.93 -0.41 0.62 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.39 4.21 8.60 -40.82 -0.35 3.86 16 42 H 0.05 0.70 7.97 -51.93 -0.41 0.28 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.86 7.76 -51.93 -0.40 0.45 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.05 1.21 7.33 -51.93 -0.38 0.83 16 50 H 0.04 1.17 6.33 -51.93 -0.33 0.84 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -34.95 396.45 -11.03 -45.97 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.02 Total: 4.56 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.77 Total: 1.20 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.27 Total: -64.73 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.95 -11.03 -45.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672159726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.144 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds