Wall clock time and date at job start Wed Apr 1 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.12408 * 2 1 4 4 C 1.32312 * 120.81480 * 180.02562 * 3 2 1 5 5 C 1.38621 * 119.10505 * 359.97438 * 4 3 2 6 6 C 1.38579 * 118.40033 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.44545 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46849 * 125.00256 * 7 6 5 9 9 C 1.50695 * 109.47152 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00165 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00340 * 180.02562 * 9 8 7 12 12 C 1.46491 * 120.00311 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.32466 * 35.35915 * 12 11 9 14 14 C 1.53033 * 109.32541 * 154.99728 * 12 11 9 15 15 C 1.53970 * 108.83248 * 175.50142 * 14 12 11 16 16 H 1.08996 * 112.99570 * 169.01207 * 15 14 12 17 17 C 1.55430 * 106.41363 * 293.82649 * 15 14 12 18 18 C 1.55172 * 100.35443 * 74.23564 * 17 15 14 19 19 H 1.09001 * 112.48748 * 162.66143 * 18 17 15 20 20 C 1.53883 * 107.26510 * 286.72621 * 18 17 15 21 21 N 1.47795 * 104.25324 * 40.54638 * 18 17 15 22 22 C 1.36934 * 125.85589 * 153.53843 * 21 18 17 23 23 H 1.08007 * 119.99995 * 5.12295 * 22 21 18 24 24 C 1.38813 * 120.00253 * 185.12428 * 22 21 18 25 25 N 1.31614 * 119.99559 * 352.98467 * 24 22 21 26 26 Si 1.86801 * 120.00068 * 172.98093 * 24 22 21 27 27 H 1.48501 * 109.46815 * 275.00924 * 26 24 22 28 28 H 1.48495 * 109.47038 * 35.01141 * 26 24 22 29 29 H 1.48502 * 109.46969 * 155.00828 * 26 24 22 30 30 C 1.47082 * 108.28897 * 333.80737 * 21 18 17 31 31 N 1.31787 * 119.11804 * 180.30094 * 2 1 3 32 32 H 1.08995 * 109.47396 * 89.99772 * 1 2 3 33 33 H 1.09004 * 109.47597 * 210.00177 * 1 2 3 34 34 H 1.09004 * 109.47196 * 330.00209 * 1 2 3 35 35 H 1.08004 * 120.44985 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.79774 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47406 * 5.00348 * 7 6 5 38 38 H 1.08994 * 109.47253 * 244.99965 * 7 6 5 39 39 H 1.08998 * 109.47432 * 59.99496 * 8 7 6 40 40 H 1.09003 * 109.47172 * 299.99944 * 8 7 6 41 41 H 0.97001 * 119.99221 * 359.97438 * 11 9 8 42 42 H 1.09004 * 109.57484 * 55.70166 * 14 12 11 43 43 H 1.08995 * 109.69066 * 295.37351 * 14 12 11 44 44 H 1.09001 * 111.24015 * 316.46026 * 17 15 14 45 45 H 1.09000 * 111.23488 * 192.01173 * 17 15 14 46 46 H 1.08996 * 109.53309 * 185.71863 * 20 18 17 47 47 H 1.09002 * 109.52885 * 305.94390 * 20 18 17 48 48 H 0.97009 * 120.00035 * 179.97438 * 25 24 22 49 49 H 1.08994 * 109.97797 * 120.19181 * 30 21 18 50 50 H 1.09000 * 109.97503 * 241.47539 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1808 -0.0003 -0.0005 6 6 3.4711 -1.1906 -0.0005 7 6 4.1960 -2.5118 0.0001 8 6 3.7153 -3.3566 1.1817 9 6 4.4406 -4.6775 1.1827 10 8 5.2607 -4.9197 0.3228 11 7 4.1770 -5.5904 2.1387 12 6 4.8817 -6.8747 2.1394 13 1 5.9048 -6.7250 1.7944 14 6 4.9044 -7.4391 3.5616 15 6 5.5460 -8.8384 3.5308 16 1 5.7710 -9.2256 4.5245 17 6 4.5775 -9.7481 2.7244 18 6 4.8515 -9.2397 1.2842 19 1 4.5028 -9.9370 0.5225 20 6 4.1935 -7.8546 1.1558 21 7 6.3156 -9.0419 1.2405 22 6 7.0996 -9.0990 0.1193 23 1 6.6442 -9.2215 -0.8524 24 6 8.4796 -8.9994 0.2315 25 7 9.0262 -8.7126 1.3938 26 14 9.5606 -9.2725 -1.2673 27 1 9.8212 -10.7253 -1.4315 28 1 8.8714 -8.7535 -2.4759 29 1 10.8486 -8.5559 -1.0858 30 6 6.7869 -8.7798 2.6089 31 7 2.1483 -1.1513 -0.0060 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 3.9907 2.1373 -0.0009 36 1 5.2608 -0.0003 -0.0005 37 1 5.2682 -2.3379 0.0901 38 1 3.9903 -3.0394 -0.9312 39 1 2.6430 -3.5304 1.0918 40 1 3.9209 -2.8289 2.1131 41 1 3.5208 -5.3968 2.8263 42 1 3.8853 -7.5129 3.9415 43 1 5.4884 -6.7837 4.2076 44 1 3.5408 -9.5753 3.0134 45 1 4.8442 -10.7997 2.8293 46 1 4.2759 -7.5059 0.1264 47 1 3.1422 -7.9233 1.4354 48 1 9.9907 -8.6434 1.4724 49 1 7.5101 -9.5394 2.9056 50 1 7.2418 -7.7907 2.6630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672159726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:54 Heat of formation + Delta-G solvation = 7.900609 kcal Electronic energy + Delta-G solvation = -30182.109113 eV Core-core repulsion = 26208.635069 eV Total energy + Delta-G solvation = -3973.474043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.10322 -41.41689 -40.10903 -36.30797 -35.90556 -34.67302 -34.36936 -32.71788 -32.33078 -31.17426 -29.87794 -29.37716 -27.21284 -26.80431 -24.93442 -24.24985 -23.25571 -22.43872 -21.40610 -21.08588 -20.06278 -18.91058 -18.60809 -18.16608 -17.38621 -16.95791 -16.65870 -16.49774 -16.25333 -16.09559 -15.93077 -15.44907 -15.18308 -14.67174 -14.58925 -14.16911 -14.08815 -13.79641 -13.69928 -13.56891 -13.43364 -13.31323 -13.23588 -13.19506 -13.05691 -12.96473 -12.62691 -12.50901 -12.31554 -12.11595 -11.89127 -11.83421 -11.64532 -11.55169 -11.38599 -11.14533 -11.00910 -10.71052 -10.64537 -10.35367 -10.23485 -9.91123 -8.81340 -7.83414 -5.13767 -0.09921 0.06109 1.40098 1.42834 1.50098 1.72959 2.24684 2.49660 2.72136 2.91493 3.14761 3.34465 3.47701 3.66629 3.73942 3.80508 3.94072 4.03567 4.08272 4.12046 4.19819 4.21274 4.40234 4.40869 4.47447 4.56296 4.57027 4.62175 4.68037 4.69431 4.72688 4.80430 4.82834 4.84658 4.95592 5.06886 5.08240 5.11437 5.20321 5.30445 5.35702 5.44705 5.48947 5.50746 5.51268 5.68572 5.76824 5.85354 6.03984 6.24385 6.69192 7.10608 7.15123 7.42988 7.83920 8.48566 9.27142 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.002477 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.176181 B =11299.188894 C =12570.375740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.302 3.698 3 N -0.543 5.543 4 C 0.151 3.849 5 C -0.232 4.232 6 C 0.173 3.827 7 C -0.053 4.053 8 C -0.112 4.112 9 C 0.501 3.499 10 O -0.588 6.588 11 N -0.712 5.712 12 C 0.152 3.848 13 H 0.042 0.958 14 C -0.098 4.098 15 C -0.108 4.108 16 H 0.108 0.892 17 C -0.111 4.111 18 C 0.140 3.860 19 H 0.060 0.940 20 C -0.121 4.121 21 N -0.614 5.614 22 C -0.229 4.229 23 H 0.069 0.931 24 C -0.066 4.066 25 N -0.948 5.948 26 Si 0.967 3.033 27 H -0.281 1.281 28 H -0.279 1.279 29 H -0.295 1.295 30 C 0.190 3.810 31 N -0.534 5.534 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.202 0.798 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.415 0.585 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.081 0.919 48 H 0.243 0.757 49 H 0.003 0.997 50 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 16.434 5.808 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 N -0.259 5.259 4 C -0.014 4.014 5 C -0.253 4.253 6 C 0.028 3.972 7 C -0.092 4.092 8 C -0.152 4.152 9 C 0.288 3.712 10 O -0.468 6.468 11 N -0.363 5.363 12 C 0.047 3.953 13 H 0.060 0.940 14 C -0.135 4.135 15 C -0.127 4.127 16 H 0.126 0.874 17 C -0.149 4.149 18 C 0.033 3.967 19 H 0.078 0.922 20 C -0.162 4.162 21 N -0.339 5.339 22 C -0.358 4.358 23 H 0.087 0.913 24 C -0.259 4.259 25 N -0.597 5.597 26 Si 0.796 3.204 27 H -0.208 1.208 28 H -0.204 1.204 29 H -0.222 1.222 30 C 0.065 3.935 31 N -0.250 5.250 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.218 0.782 36 H 0.187 0.813 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.252 0.748 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.039 0.961 47 H 0.100 0.900 48 H 0.053 0.947 49 H 0.021 0.979 50 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -18.950 16.285 5.135 25.508 hybrid contribution 2.242 -0.111 -1.042 2.475 sum -16.708 16.175 4.093 23.612 Atomic orbital electron populations 1.20657 0.83853 1.04974 1.04618 1.23861 0.99521 0.83201 0.89913 1.68335 1.11165 1.30586 1.15791 1.23819 0.89281 0.99889 0.88395 1.23070 1.04274 0.93588 1.04415 1.21737 0.89726 0.96070 0.89698 1.20254 0.99411 0.90102 0.99426 1.21452 1.02036 0.91074 1.00617 1.21322 0.82205 0.86827 0.80806 1.90791 1.36577 1.80424 1.38962 1.45962 1.43728 1.16095 1.30527 1.21095 0.95632 0.82343 0.96246 0.93987 1.21838 1.02499 0.95630 0.93582 1.22783 0.95282 0.95715 0.98964 0.87365 1.22936 0.99881 0.98559 0.93483 1.21863 0.83648 0.93991 0.97198 0.92237 1.22702 0.99433 0.96799 0.97243 1.44842 1.02589 1.82842 1.03597 1.19275 0.88549 1.41281 0.86719 0.91313 1.25510 0.97857 1.02986 0.99556 1.70175 1.09309 1.56048 1.24195 0.85252 0.78157 0.77656 0.79312 1.20758 1.20415 1.22176 1.21010 0.92673 0.96449 0.83341 1.68083 1.09919 1.31166 1.15794 0.88890 0.88882 0.88648 0.78175 0.81345 0.89176 0.90434 0.86529 0.86849 0.74761 0.87701 0.91554 0.87522 0.91980 0.96085 0.90021 0.94731 0.97899 0.98045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.32 71.24 0.74 -0.31 16 2 C 0.30 5.91 7.64 138.75 1.06 6.97 16 3 N -0.54 -10.47 10.33 -187.83 -1.94 -12.41 16 4 C 0.15 2.29 11.31 84.71 0.96 3.25 16 5 C -0.23 -3.78 9.80 22.44 0.22 -3.56 16 6 C 0.17 3.57 6.20 42.56 0.26 3.84 16 7 C -0.05 -1.22 4.94 29.85 0.15 -1.07 16 8 C -0.11 -2.34 5.57 29.85 0.17 -2.17 16 9 C 0.50 15.70 7.78 87.65 0.68 16.38 16 10 O -0.59 -26.13 15.65 -3.02 -0.05 -26.17 16 11 N -0.71 -19.43 5.11 -439.32 -2.25 -21.67 16 12 C 0.15 5.40 2.08 45.67 0.09 5.49 16 13 H 0.04 2.12 5.51 -2.38 -0.01 2.11 16 14 C -0.10 -2.73 5.01 30.93 0.16 -2.57 16 15 C -0.11 -3.62 4.26 -9.05 -0.04 -3.66 16 16 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 17 C -0.11 -3.41 6.18 32.17 0.20 -3.21 16 18 C 0.14 5.65 4.25 45.79 0.19 5.84 16 19 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 20 C -0.12 -4.44 5.45 31.56 0.17 -4.27 16 21 N -0.61 -32.24 2.46 -664.46 -1.64 -33.87 16 22 C -0.23 -13.67 10.28 84.03 0.86 -12.81 16 23 H 0.07 4.07 7.84 -2.91 -0.02 4.05 16 24 C -0.07 -4.03 5.48 84.86 0.46 -3.57 16 25 N -0.95 -59.96 10.40 21.65 0.23 -59.74 16 26 Si 0.97 49.36 29.56 68.60 2.03 51.39 16 27 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 29 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 30 C 0.19 9.44 4.12 86.85 0.36 9.80 16 31 N -0.53 -11.57 9.94 -176.03 -1.75 -13.32 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.17 1.96 8.01 -2.91 -0.02 1.94 16 37 H 0.09 2.10 7.90 -2.39 -0.02 2.08 16 38 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 39 H 0.12 2.13 7.99 -2.39 -0.02 2.11 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.42 7.29 8.60 -92.71 -0.80 6.49 16 42 H 0.10 1.98 7.97 -2.39 -0.02 1.96 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.11 2.37 7.76 -2.39 -0.02 2.36 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 48 H 0.24 15.04 8.31 -92.70 -0.77 14.27 16 49 H 0.00 0.16 7.33 -2.39 -0.02 0.14 16 50 H 0.00 0.08 6.33 -2.39 -0.02 0.07 16 Total: -1.00 -85.30 396.45 1.48 -83.82 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.15 Total: 17.61 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.70 Total: 14.37 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -7.35 Total: -141.01 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -85.30 1.48 -83.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672159726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.723 kcal (2) G-P(sol) polarization free energy of solvation -85.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds