Wall clock time and date at job start Wed Apr 1 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53000 * 109.46956 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47129 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47079 * 304.99783 * 5 4 3 7 7 C 1.52998 * 109.47223 * 184.99898 * 5 4 3 8 8 N 1.46494 * 109.47371 * 184.99696 * 7 5 4 9 9 C 1.36943 * 120.00264 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.38807 * 119.99847 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00324 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99881 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46915 * 90.00484 * 13 11 9 15 15 H 1.48499 * 109.47765 * 210.00361 * 13 11 9 16 16 H 1.48499 * 109.47250 * 330.00729 * 13 11 9 17 17 N 1.46506 * 109.47195 * 65.00026 * 5 4 3 18 18 C 1.34775 * 119.99624 * 274.99852 * 17 5 4 19 19 O 1.21605 * 120.00092 * 0.02562 * 18 17 5 20 20 C 1.47522 * 119.99935 * 180.02562 * 18 17 5 21 21 C 1.46507 * 120.16570 * 353.57988 * 20 18 17 22 22 C 1.35526 * 119.04611 * 179.68668 * 21 20 18 23 23 C 1.41231 * 119.42776 * 0.58455 * 22 21 20 24 24 C 1.37908 * 132.97067 * 179.71088 * 23 22 21 25 25 N 1.33450 * 107.66039 * 179.97438 * 24 23 22 26 26 C 1.30750 * 109.93482 * 359.97438 * 25 24 23 27 27 N 1.35926 * 109.20983 * 0.02562 * 26 25 24 28 28 C 1.36327 * 120.16826 * 173.86039 * 20 18 17 29 29 C 1.50696 * 119.74707 * 359.97438 * 28 20 18 30 30 H 1.09004 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47521 * 299.99801 * 1 2 3 32 32 H 1.08997 * 109.47423 * 60.00291 * 1 2 3 33 33 H 1.08998 * 109.47378 * 239.99426 * 2 1 3 34 34 H 1.09009 * 109.46757 * 119.99666 * 2 1 3 35 35 H 1.09000 * 109.47316 * 60.00019 * 3 2 1 36 36 H 1.08998 * 109.47303 * 299.99869 * 3 2 1 37 37 H 1.09000 * 109.47093 * 59.99882 * 4 3 2 38 38 H 1.09009 * 109.47172 * 299.99325 * 4 3 2 39 39 H 1.09004 * 109.47175 * 305.00088 * 7 5 4 40 40 H 1.09004 * 109.47376 * 64.99530 * 7 5 4 41 41 H 0.96998 * 119.99868 * 0.02562 * 8 7 5 42 42 H 0.96999 * 120.00234 * 179.97438 * 12 11 9 43 43 H 0.96991 * 119.99849 * 94.99969 * 17 5 4 44 44 H 1.08004 * 120.47118 * 359.97438 * 21 20 18 45 45 H 1.08002 * 120.28867 * 180.29010 * 22 21 20 46 46 H 1.08004 * 126.17567 * 359.97438 * 24 23 22 47 47 H 1.08001 * 125.39743 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.47350 * 83.13478 * 29 28 20 49 49 H 1.09000 * 109.46936 * 203.14040 * 29 28 20 50 50 H 1.09006 * 109.47295 * 323.13802 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 5.6048 2.8869 -0.1238 8 7 6.1030 4.2592 -0.0035 9 6 7.4470 4.5094 -0.0839 10 1 8.1396 3.6950 -0.2365 11 6 7.9189 5.8098 0.0295 12 7 7.0747 6.8025 0.2150 13 14 9.7521 6.1512 -0.0810 14 1 10.1241 6.4039 -1.4962 15 1 10.0839 7.3442 0.7386 16 1 10.5058 4.9767 0.4267 17 7 3.6919 3.5396 1.2532 18 6 2.4745 4.1065 1.3679 19 8 1.6981 4.0742 0.4325 20 6 2.0839 4.7662 2.6282 21 6 2.9567 4.6866 3.8022 22 6 2.5787 5.3064 4.9465 23 6 1.3503 6.0023 4.9855 24 6 0.7022 6.7107 5.9755 25 7 -0.4426 7.1670 5.4636 26 6 -0.5543 6.7911 4.2163 27 7 0.5388 6.0614 3.8695 28 6 0.9062 5.4482 2.7081 29 6 0.0042 5.5265 1.5034 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9336 0.9285 -0.8891 38 1 3.9329 0.9288 0.8910 39 1 6.0351 2.2734 0.6679 40 1 5.8903 2.4804 -1.0941 41 1 5.4809 4.9907 0.1340 42 1 7.4045 7.7112 0.2947 43 1 4.3110 3.5651 1.9993 44 1 3.8903 4.1455 3.7549 45 1 3.2090 5.2646 5.8226 46 1 1.0571 6.8679 6.9834 47 1 -1.3840 7.0229 3.5650 48 1 -0.6066 4.6255 1.4476 49 1 -0.6428 6.3994 1.5901 50 1 0.6098 5.6113 0.6010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675222438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:21 Heat of formation + Delta-G solvation = 49.960261 kcal Electronic energy + Delta-G solvation = -30667.425305 eV Core-core repulsion = 26695.775105 eV Total energy + Delta-G solvation = -3971.650200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.87692 -40.10612 -37.49859 -36.35721 -34.99674 -34.27999 -33.47141 -31.87153 -31.16105 -30.36202 -28.84354 -27.68335 -27.04572 -24.36252 -23.92822 -22.77959 -22.32631 -21.38532 -20.96997 -20.78951 -20.20494 -18.30319 -17.41739 -16.81151 -16.38189 -16.31333 -16.11095 -15.51162 -14.96675 -14.86562 -14.67299 -14.37314 -13.92293 -13.82133 -13.70421 -13.54486 -13.30083 -13.12541 -13.04801 -12.79564 -12.69100 -12.64335 -12.11547 -11.92911 -11.65773 -11.56157 -11.37251 -11.12163 -10.97665 -10.89007 -10.84181 -10.73916 -10.44832 -10.41623 -10.36034 -10.06957 -9.79035 -9.59037 -9.32032 -8.97758 -8.69646 -7.62520 -7.02685 -5.83808 -3.14142 0.56430 0.93687 2.31988 2.66837 3.03063 3.36969 3.39383 3.44051 3.45640 3.55193 4.18400 4.41766 4.49177 4.53055 4.64778 4.68998 4.80143 4.81126 5.01406 5.13420 5.25107 5.31301 5.35908 5.38312 5.41036 5.47710 5.49601 5.50103 5.62530 5.77158 5.81508 5.83674 5.89114 5.92064 5.97664 6.04792 6.09146 6.10978 6.17036 6.24557 6.36335 6.39788 6.42606 6.45151 6.56840 6.63211 6.85799 6.99440 7.62603 7.69642 7.72242 8.33418 8.36094 9.45814 10.00853 10.36002 11.38206 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007272 B = 0.003925 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.635748 B = 7132.283120 C =10174.129601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.127 4.127 5 C 0.139 3.861 6 H 0.090 0.910 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.698 5.698 18 C 0.571 3.429 19 O -0.534 6.534 20 C -0.159 4.159 21 C -0.089 4.089 22 C -0.090 4.090 23 C 0.015 3.985 24 C -0.026 4.026 25 N -0.453 5.453 26 C 0.147 3.853 27 N -0.374 5.374 28 C 0.161 3.839 29 C -0.122 4.122 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.404 0.596 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.181 0.819 47 H 0.211 0.789 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.668 -8.799 6.490 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.166 4.166 5 C 0.035 3.965 6 H 0.108 0.892 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.089 0.911 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.348 5.348 18 C 0.358 3.642 19 O -0.415 6.415 20 C -0.165 4.165 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.094 4.094 24 C -0.179 4.179 25 N -0.166 5.166 26 C -0.128 4.128 27 N -0.047 5.047 28 C 0.056 3.944 29 C -0.178 4.178 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.240 0.760 44 H 0.161 0.839 45 H 0.168 0.832 46 H 0.198 0.802 47 H 0.228 0.772 48 H 0.109 0.891 49 H 0.082 0.918 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.708 -8.335 6.157 18.819 hybrid contribution 1.880 0.148 0.018 1.886 sum -13.828 -8.187 6.175 17.216 Atomic orbital electron populations 1.21739 0.96278 1.00873 1.01778 1.21573 0.95600 0.97767 1.01376 1.21669 0.94731 0.95354 1.03172 1.21986 0.96131 0.96182 1.02291 1.21358 0.96162 0.92476 0.86543 0.89215 1.20974 0.89131 0.89438 0.98900 1.42345 1.05426 1.01967 1.87895 1.19201 0.83606 0.92493 1.42297 0.91137 1.24741 0.97665 0.95653 1.02556 1.69663 1.32925 0.99040 1.56151 0.86207 0.85091 0.77435 0.77523 1.21684 1.21765 1.20730 1.45809 1.15434 1.56272 1.17320 1.17460 0.82290 0.78288 0.86123 1.90720 1.51407 1.59170 1.40162 1.20263 0.95181 1.04996 0.96040 1.22128 0.98811 0.98922 0.91067 1.20374 0.93644 0.97393 0.99523 1.19773 0.94974 1.06219 0.88403 1.22544 0.92746 1.02950 0.99612 1.69948 1.19147 1.20856 1.06679 1.25053 0.92905 1.00460 0.94425 1.42971 1.17145 1.35264 1.09291 1.20384 0.95185 0.92239 0.86570 1.21351 0.98750 1.02645 0.95068 0.93329 0.93062 0.92777 0.92399 0.92639 0.91823 0.91433 0.91017 0.91939 0.95797 0.94781 0.78009 0.93456 0.76041 0.83895 0.83174 0.80196 0.77235 0.89086 0.91848 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.31 5.93 -26.73 -0.16 -1.46 16 3 C -0.11 -1.36 3.82 -26.73 -0.10 -1.47 16 4 C -0.13 -1.56 4.89 -26.73 -0.13 -1.69 16 5 C 0.14 2.10 2.42 -67.93 -0.16 1.94 16 6 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 7 C 0.14 2.60 5.82 -4.05 -0.02 2.58 16 8 N -0.73 -17.25 5.43 -59.91 -0.33 -17.58 16 9 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 10 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 13 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 N -0.70 -10.12 4.43 -54.84 -0.24 -10.36 16 18 C 0.57 8.38 6.25 -12.48 -0.08 8.30 16 19 O -0.53 -8.35 10.34 5.27 0.05 -8.30 16 20 C -0.16 -2.16 5.98 -103.47 -0.62 -2.78 16 21 C -0.09 -1.08 9.72 -37.22 -0.36 -1.44 16 22 C -0.09 -1.03 10.09 -39.41 -0.40 -1.43 16 23 C 0.01 0.19 6.78 -84.02 -0.57 -0.38 16 24 C -0.03 -0.32 12.00 -16.97 -0.20 -0.53 16 25 N -0.45 -6.07 11.19 -13.78 -0.15 -6.23 16 26 C 0.15 1.74 12.09 -89.36 -1.08 0.66 16 27 N -0.37 -4.82 2.94 -57.74 -0.17 -4.99 16 28 C 0.16 2.08 6.83 -81.26 -0.55 1.53 16 29 C -0.12 -1.35 8.55 36.00 0.31 -1.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.06 0.86 5.64 -51.93 -0.29 0.56 16 36 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.39 9.77 7.33 -40.82 -0.30 9.47 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.40 5.66 6.74 -40.82 -0.28 5.38 16 44 H 0.14 1.51 6.63 -52.48 -0.35 1.17 16 45 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 47 H 0.21 1.72 7.55 -52.49 -0.40 1.32 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.06 0.56 7.15 -51.93 -0.37 0.19 16 50 H 0.12 1.62 5.77 -51.93 -0.30 1.32 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -31.71 400.73 -10.81 -42.53 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -7.70 Total: 14.08 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -4.01 Total: -5.34 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.17 Total: -65.76 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.05 Total: -8.30 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.71 -10.81 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675222438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.489 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds