Wall clock time and date at job start Wed Apr 1 2020 03:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53000 * 109.46956 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47129 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47079 * 304.99783 * 5 4 3 7 7 C 1.52998 * 109.47223 * 184.99898 * 5 4 3 8 8 N 1.46494 * 109.47371 * 184.99696 * 7 5 4 9 9 C 1.36943 * 120.00264 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.38807 * 119.99847 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00324 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99881 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46915 * 90.00484 * 13 11 9 15 15 H 1.48499 * 109.47765 * 210.00361 * 13 11 9 16 16 H 1.48499 * 109.47250 * 330.00729 * 13 11 9 17 17 N 1.46506 * 109.47195 * 65.00026 * 5 4 3 18 18 C 1.34775 * 119.99624 * 274.99852 * 17 5 4 19 19 O 1.21605 * 120.00092 * 0.02562 * 18 17 5 20 20 C 1.47522 * 119.99935 * 180.02562 * 18 17 5 21 21 C 1.46507 * 120.16570 * 353.57988 * 20 18 17 22 22 C 1.35526 * 119.04611 * 179.68668 * 21 20 18 23 23 C 1.41231 * 119.42776 * 0.58455 * 22 21 20 24 24 C 1.37908 * 132.97067 * 179.71088 * 23 22 21 25 25 N 1.33450 * 107.66039 * 179.97438 * 24 23 22 26 26 C 1.30750 * 109.93482 * 359.97438 * 25 24 23 27 27 N 1.35926 * 109.20983 * 0.02562 * 26 25 24 28 28 C 1.36327 * 120.16826 * 173.86039 * 20 18 17 29 29 C 1.50696 * 119.74707 * 359.97438 * 28 20 18 30 30 H 1.09004 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47521 * 299.99801 * 1 2 3 32 32 H 1.08997 * 109.47423 * 60.00291 * 1 2 3 33 33 H 1.08998 * 109.47378 * 239.99426 * 2 1 3 34 34 H 1.09009 * 109.46757 * 119.99666 * 2 1 3 35 35 H 1.09000 * 109.47316 * 60.00019 * 3 2 1 36 36 H 1.08998 * 109.47303 * 299.99869 * 3 2 1 37 37 H 1.09000 * 109.47093 * 59.99882 * 4 3 2 38 38 H 1.09009 * 109.47172 * 299.99325 * 4 3 2 39 39 H 1.09004 * 109.47175 * 305.00088 * 7 5 4 40 40 H 1.09004 * 109.47376 * 64.99530 * 7 5 4 41 41 H 0.96998 * 119.99868 * 0.02562 * 8 7 5 42 42 H 0.96999 * 120.00234 * 179.97438 * 12 11 9 43 43 H 0.96991 * 119.99849 * 94.99969 * 17 5 4 44 44 H 1.08004 * 120.47118 * 359.97438 * 21 20 18 45 45 H 1.08002 * 120.28867 * 180.29010 * 22 21 20 46 46 H 1.08004 * 126.17567 * 359.97438 * 24 23 22 47 47 H 1.08001 * 125.39743 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.47350 * 83.13478 * 29 28 20 49 49 H 1.09000 * 109.46936 * 203.14040 * 29 28 20 50 50 H 1.09006 * 109.47295 * 323.13802 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 5.6048 2.8869 -0.1238 8 7 6.1030 4.2592 -0.0035 9 6 7.4470 4.5094 -0.0839 10 1 8.1396 3.6950 -0.2365 11 6 7.9189 5.8098 0.0295 12 7 7.0747 6.8025 0.2150 13 14 9.7521 6.1512 -0.0810 14 1 10.1241 6.4039 -1.4962 15 1 10.0839 7.3442 0.7386 16 1 10.5058 4.9767 0.4267 17 7 3.6919 3.5396 1.2532 18 6 2.4745 4.1065 1.3679 19 8 1.6981 4.0742 0.4325 20 6 2.0839 4.7662 2.6282 21 6 2.9567 4.6866 3.8022 22 6 2.5787 5.3064 4.9465 23 6 1.3503 6.0023 4.9855 24 6 0.7022 6.7107 5.9755 25 7 -0.4426 7.1670 5.4636 26 6 -0.5543 6.7911 4.2163 27 7 0.5388 6.0614 3.8695 28 6 0.9062 5.4482 2.7081 29 6 0.0042 5.5265 1.5034 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9336 0.9285 -0.8891 38 1 3.9329 0.9288 0.8910 39 1 6.0351 2.2734 0.6679 40 1 5.8903 2.4804 -1.0941 41 1 5.4809 4.9907 0.1340 42 1 7.4045 7.7112 0.2947 43 1 4.3110 3.5651 1.9993 44 1 3.8903 4.1455 3.7549 45 1 3.2090 5.2646 5.8226 46 1 1.0571 6.8679 6.9834 47 1 -1.3840 7.0229 3.5650 48 1 -0.6066 4.6255 1.4476 49 1 -0.6428 6.3994 1.5901 50 1 0.6098 5.6113 0.6010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675222438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:20 Heat of formation + Delta-G solvation = 33.250727 kcal Electronic energy + Delta-G solvation = -30668.149885 eV Core-core repulsion = 26695.775105 eV Total energy + Delta-G solvation = -3972.374780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.81234 -41.24427 -38.57796 -37.51994 -36.23829 -35.43794 -34.77077 -33.14834 -32.51571 -31.61281 -29.77712 -28.82569 -28.23627 -25.91635 -24.99598 -23.76229 -23.69031 -22.42303 -22.05141 -21.77005 -21.36125 -19.39582 -19.10592 -18.04926 -17.47722 -17.30673 -17.10774 -16.69666 -16.46288 -15.86375 -15.83853 -15.56704 -15.21908 -15.15261 -14.78988 -14.56248 -14.47728 -14.25167 -14.09851 -14.01066 -13.73743 -13.69413 -13.29847 -13.13963 -12.85753 -12.78100 -12.60775 -12.50939 -12.44120 -12.11738 -11.97424 -11.84336 -11.82500 -11.66803 -11.41392 -11.38714 -11.31121 -10.97239 -10.70908 -10.32711 -9.86154 -8.99638 -8.55225 -7.93630 -5.22692 -0.42150 0.00974 1.36820 1.48901 1.49737 1.57983 1.65414 2.06763 2.27353 2.52120 2.56676 3.26885 3.41161 3.52469 3.58655 3.66651 3.72497 3.79140 3.88617 4.04083 4.11111 4.25644 4.32795 4.37572 4.40451 4.45028 4.53435 4.58060 4.60657 4.63986 4.71715 4.86444 4.92925 4.94496 4.96757 5.02055 5.09508 5.13843 5.15897 5.19287 5.26313 5.35493 5.45047 5.45647 5.52307 5.55591 5.60691 5.66173 6.06959 6.26887 6.55757 6.76775 7.21228 7.34966 8.09059 8.32146 9.29049 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007272 B = 0.003925 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.635748 B = 7132.283120 C =10174.129601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.118 4.118 5 C 0.150 3.850 6 H 0.065 0.935 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.967 5.967 13 Si 0.969 3.031 14 H -0.292 1.292 15 H -0.299 1.299 16 H -0.267 1.267 17 N -0.698 5.698 18 C 0.569 3.431 19 O -0.549 6.549 20 C -0.176 4.176 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.009 4.009 24 C -0.028 4.028 25 N -0.479 5.479 26 C 0.149 3.851 27 N -0.381 5.381 28 C 0.156 3.844 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.406 0.594 44 H 0.154 0.846 45 H 0.179 0.821 46 H 0.205 0.795 47 H 0.242 0.758 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 -10.196 7.232 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.141 4.141 4 C -0.157 4.157 5 C 0.046 3.954 6 H 0.084 0.916 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.618 5.618 13 Si 0.798 3.202 14 H -0.219 1.219 15 H -0.226 1.226 16 H -0.191 1.191 17 N -0.348 5.348 18 C 0.357 3.643 19 O -0.430 6.430 20 C -0.182 4.182 21 C -0.125 4.125 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.180 4.180 25 N -0.192 5.192 26 C -0.126 4.126 27 N -0.054 5.054 28 C 0.052 3.948 29 C -0.172 4.172 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.242 0.758 44 H 0.172 0.828 45 H 0.196 0.804 46 H 0.221 0.779 47 H 0.258 0.742 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.725 -9.791 6.903 19.768 hybrid contribution 1.802 0.561 -0.209 1.899 sum -13.922 -9.230 6.694 17.996 Atomic orbital electron populations 1.21728 0.95853 1.01699 1.01305 1.21544 0.95990 0.96289 1.02132 1.21543 0.94502 0.96455 1.01614 1.21923 0.96158 0.94102 1.03472 1.21157 0.94032 0.94109 0.86147 0.91650 1.21131 0.91028 0.86799 0.99307 1.42517 1.04427 1.03832 1.87771 1.19620 0.85083 0.92612 1.40065 0.90320 1.25487 1.01502 0.95737 1.03599 1.69823 1.34572 0.99004 1.58385 0.85210 0.80709 0.77248 0.76993 1.21899 1.22559 1.19120 1.45756 1.15561 1.56450 1.17052 1.17642 0.82096 0.78070 0.86458 1.90714 1.51782 1.59664 1.40807 1.20303 0.96109 1.05740 0.96068 1.22273 0.99277 0.99925 0.90982 1.20721 0.93376 0.96112 1.00167 1.20144 0.95747 1.07095 0.88700 1.23032 0.92308 1.02093 1.00546 1.69985 1.19866 1.21844 1.07516 1.25762 0.93137 0.99181 0.94506 1.43093 1.17553 1.35518 1.09283 1.20576 0.95274 0.91888 0.87102 1.21289 0.98490 1.04068 0.93369 0.91834 0.93636 0.93197 0.91544 0.91888 0.93196 0.93217 0.89827 0.90621 0.94254 0.94432 0.79370 0.94256 0.75769 0.82827 0.80376 0.77860 0.74210 0.88365 0.89504 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.98 16 2 C -0.12 -2.33 5.93 30.59 0.18 -2.15 16 3 C -0.10 -2.46 3.82 30.59 0.12 -2.35 16 4 C -0.12 -2.75 4.89 30.60 0.15 -2.60 16 5 C 0.15 4.52 2.42 44.99 0.11 4.63 16 6 H 0.07 2.30 7.58 -2.39 -0.02 2.29 16 7 C 0.14 5.10 5.82 86.38 0.50 5.60 16 8 N -0.74 -35.06 5.43 -343.46 -1.87 -36.93 16 9 C -0.24 -12.78 9.99 84.03 0.84 -11.94 16 10 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 12 N -0.97 -57.83 13.06 21.65 0.28 -57.54 16 13 Si 0.97 44.81 29.55 68.60 2.03 46.83 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 N -0.70 -20.38 4.43 -445.68 -1.97 -22.35 16 18 C 0.57 17.07 6.25 86.69 0.54 17.61 16 19 O -0.55 -17.70 10.34 -4.05 -0.04 -17.74 16 20 C -0.18 -4.84 5.98 -19.12 -0.11 -4.95 16 21 C -0.10 -2.51 9.72 23.80 0.23 -2.28 16 22 C -0.08 -1.85 10.09 22.38 0.23 -1.63 16 23 C -0.01 -0.23 6.78 38.81 0.26 0.04 16 24 C -0.03 -0.66 12.00 84.37 1.01 0.36 16 25 N -0.48 -12.23 11.19 -197.50 -2.21 -14.44 16 26 C 0.15 3.34 12.09 179.91 2.17 5.51 16 27 N -0.38 -9.52 2.94 -336.60 -0.99 -10.51 16 28 C 0.16 4.02 6.83 41.41 0.28 4.31 16 29 C -0.12 -2.54 8.55 71.23 0.61 -1.93 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 35 H 0.05 1.33 5.64 -2.39 -0.01 1.32 16 36 H 0.05 1.35 7.84 -2.39 -0.02 1.34 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.37 19.32 7.33 -92.71 -0.68 18.64 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.41 11.38 6.74 -92.72 -0.62 10.76 16 44 H 0.15 3.21 6.63 -2.91 -0.02 3.19 16 45 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 46 H 0.20 3.46 8.06 -2.91 -0.02 3.43 16 47 H 0.24 3.43 7.55 -2.91 -0.02 3.40 16 48 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.09 1.43 7.15 -2.39 -0.02 1.42 16 50 H 0.10 2.75 5.77 -2.38 -0.01 2.74 16 Total: -1.00 -68.18 400.73 3.19 -64.99 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -0.34 Total: 44.89 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 8.31 Total: 2.79 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -6.76 Total: -141.77 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.04 Total: -17.74 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.18 3.19 -64.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675222438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.239 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds