Wall clock time and date at job start Wed Apr 1 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47434 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46888 * 55.00148 * 5 4 3 7 7 C 1.53003 * 109.47014 * 174.99394 * 5 4 3 8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31617 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47050 * 59.99408 * 13 11 9 15 15 H 1.48496 * 109.47289 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46855 * 299.99389 * 13 11 9 17 17 N 1.46491 * 109.46969 * 294.99999 * 5 4 3 18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4 19 19 O 1.21712 * 120.00237 * 359.97438 * 18 17 5 20 20 C 1.46570 * 119.99932 * 179.97438 * 18 17 5 21 21 C 1.40556 * 126.57832 * 359.68886 * 20 18 17 22 22 N 1.30741 * 108.74180 * 179.85374 * 21 20 18 23 23 N 1.40019 * 109.60650 * 0.41483 * 22 21 20 24 24 C 1.36240 * 132.01419 * 179.68855 * 23 22 21 25 25 C 1.35184 * 120.70389 * 180.02562 * 24 23 22 26 26 C 1.40158 * 120.32024 * 0.03850 * 25 24 23 27 27 C 1.50701 * 120.29506 * 180.02562 * 26 25 24 28 28 C 1.36445 * 119.40883 * 359.97438 * 26 25 24 29 29 C 1.36573 * 107.90432 * 359.73561 * 23 22 21 30 30 H 1.08996 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46758 * 299.99717 * 1 2 3 32 32 H 1.09002 * 109.47072 * 59.99810 * 1 2 3 33 33 H 1.09004 * 109.47269 * 240.00349 * 2 1 3 34 34 H 1.08991 * 109.47771 * 119.99996 * 2 1 3 35 35 H 1.08997 * 109.47600 * 59.99990 * 3 2 1 36 36 H 1.09002 * 109.47306 * 300.00047 * 3 2 1 37 37 H 1.08995 * 109.47597 * 59.99813 * 4 3 2 38 38 H 1.09005 * 109.47041 * 299.99967 * 4 3 2 39 39 H 1.08998 * 109.46692 * 55.00382 * 7 5 4 40 40 H 1.08994 * 109.47584 * 295.00246 * 7 5 4 41 41 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 42 42 H 0.97004 * 120.00382 * 180.02562 * 12 11 9 43 43 H 0.97006 * 119.99804 * 264.99213 * 17 5 4 44 44 H 1.08002 * 125.63258 * 0.02562 * 21 20 18 45 45 H 1.08004 * 119.64536 * 0.04891 * 24 23 22 46 46 H 1.08001 * 119.83845 * 180.02562 * 25 24 23 47 47 H 1.09002 * 109.47353 * 269.98533 * 27 26 25 48 48 H 1.09007 * 109.47112 * 29.97781 * 27 26 25 49 49 H 1.08996 * 109.47012 * 149.97862 * 27 26 25 50 50 H 1.08000 * 120.37441 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6457 3.4236 0.8423 7 6 5.6048 2.8868 0.1252 8 7 6.1030 4.2594 0.0060 9 6 7.4468 4.5095 0.0869 10 1 8.1395 3.6949 0.2389 11 6 7.9194 5.8093 -0.0317 12 7 7.0757 6.8013 -0.2223 13 14 9.7527 6.1504 0.0779 14 1 10.4588 5.4122 -1.0000 15 1 9.9955 7.6069 -0.0792 16 1 10.2613 5.7030 1.3995 17 7 3.6919 3.5408 -1.2512 18 6 2.4745 4.1077 -1.3655 19 8 1.6974 4.0746 -0.4294 20 6 2.0865 4.7642 -2.6172 21 6 2.8717 4.8883 -3.7764 22 7 2.1838 5.5321 -4.6828 23 7 0.9265 5.8691 -4.1669 24 6 -0.1319 6.5357 -4.7070 25 6 -1.2593 6.7381 -3.9890 26 6 -1.3551 6.2639 -2.6735 27 6 -2.6124 6.4894 -1.8738 28 6 -0.3003 5.5954 -2.1238 29 6 0.8574 5.3971 -2.8872 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.9330 0.9289 -0.8908 38 1 3.9337 0.9286 0.8892 39 1 6.0351 2.2741 -0.6669 40 1 5.8903 2.4796 1.0951 41 1 5.4808 4.9911 -0.1301 42 1 7.4058 7.7097 -0.3055 43 1 4.3111 3.5669 -1.9974 44 1 3.8763 4.5114 -3.8991 45 1 -0.0697 6.9060 -5.7196 46 1 -2.0900 7.2680 -4.4311 47 1 -2.5346 7.4324 -1.3327 48 1 -3.4692 6.5263 -2.5466 49 1 -2.7427 5.6727 -1.1639 50 1 -0.3571 5.2236 -1.1114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675222751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:58 Heat of formation + Delta-G solvation = 36.000387 kcal Electronic energy + Delta-G solvation = -30381.994628 eV Core-core repulsion = 26409.739083 eV Total energy + Delta-G solvation = -3972.255545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.19326 -40.68946 -38.63711 -37.73051 -36.23429 -35.04418 -34.57299 -32.99636 -32.38270 -31.79943 -30.23432 -28.73994 -28.00936 -25.87076 -24.84157 -23.84268 -23.72732 -22.97820 -21.80832 -21.67283 -21.05913 -19.28965 -18.84942 -17.81224 -17.33869 -17.23847 -16.90023 -16.65115 -16.28821 -15.92656 -15.71318 -15.66746 -15.30547 -15.08193 -14.84456 -14.42975 -14.38270 -14.32750 -14.08582 -13.77240 -13.50923 -13.45274 -13.12636 -12.94343 -12.84704 -12.74555 -12.70753 -12.50204 -12.44762 -12.16860 -11.98859 -11.93835 -11.83019 -11.81719 -11.40379 -11.37024 -11.27890 -10.95592 -10.72145 -10.34209 -9.84505 -8.98838 -8.68850 -7.91952 -5.21663 -0.38303 -0.01760 1.09706 1.15025 1.48152 1.51125 1.57124 2.16438 2.39595 2.57629 2.64779 3.18240 3.41984 3.47260 3.66510 3.68968 3.84295 4.03608 4.06421 4.11330 4.11891 4.25932 4.34580 4.38156 4.39967 4.45353 4.56236 4.59703 4.66277 4.78386 4.83359 4.88476 4.91883 4.94781 4.98352 5.02425 5.11315 5.13761 5.16855 5.25994 5.28768 5.34906 5.35896 5.46512 5.48204 5.52078 5.62826 5.74582 5.77905 6.27739 6.35129 6.75383 7.35210 7.44961 8.10084 8.33810 9.30703 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008166 B = 0.003543 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.870727 B = 7900.205018 C =10375.525190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.116 4.116 5 C 0.152 3.848 6 H 0.058 0.942 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.973 3.027 14 H -0.275 1.275 15 H -0.300 1.300 16 H -0.279 1.279 17 N -0.705 5.705 18 C 0.599 3.401 19 O -0.580 6.580 20 C -0.347 4.347 21 C 0.123 3.877 22 N -0.344 5.344 23 N -0.275 5.275 24 C 0.098 3.902 25 C -0.143 4.143 26 C -0.024 4.024 27 C -0.116 4.116 28 C -0.146 4.146 29 C 0.153 3.847 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.403 0.597 44 H 0.212 0.788 45 H 0.204 0.796 46 H 0.207 0.793 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.072 0.928 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 -6.423 -8.633 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.047 3.953 6 H 0.076 0.924 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.375 4.375 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.201 1.201 15 H -0.226 1.226 16 H -0.205 1.205 17 N -0.355 5.355 18 C 0.389 3.611 19 O -0.462 6.462 20 C -0.361 4.361 21 C -0.057 4.057 22 N -0.165 5.165 23 N -0.039 5.039 24 C -0.027 4.027 25 C -0.163 4.163 26 C -0.029 4.029 27 C -0.172 4.172 28 C -0.166 4.166 29 C 0.032 3.968 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.238 0.762 44 H 0.228 0.772 45 H 0.220 0.780 46 H 0.224 0.776 47 H 0.109 0.891 48 H 0.123 0.877 49 H 0.091 0.909 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.477 -6.102 -9.203 25.043 hybrid contribution 1.629 0.534 0.663 1.838 sum -20.848 -5.568 -8.541 23.208 Atomic orbital electron populations 1.21720 0.95812 1.01757 1.01181 1.21544 0.96064 0.96061 1.02186 1.21518 0.94688 0.96472 1.01330 1.21908 0.96046 0.94245 1.03335 1.21082 0.93979 0.93966 0.86321 0.92385 1.21114 0.90980 0.86799 0.99193 1.42535 1.04463 1.03809 1.87769 1.19612 0.85024 0.92710 1.40165 0.90254 1.25554 1.01792 0.95700 1.03594 1.69847 1.34746 0.99056 1.58287 0.85218 0.80316 0.76074 0.78163 1.20112 1.22604 1.20542 1.45607 1.15646 1.57462 1.16777 1.16927 0.81512 0.76828 0.85832 1.90691 1.52553 1.62034 1.40971 1.19792 0.96760 1.21086 0.98479 1.24337 0.99639 0.92311 0.89386 1.77468 0.90272 1.26266 1.22532 1.46317 1.12082 1.35643 1.09856 1.22430 0.83967 0.94326 1.01979 1.21425 0.98321 1.02949 0.93643 1.20547 0.95930 0.91657 0.94798 1.20970 0.92661 1.03572 1.00001 1.20741 0.90991 1.03688 1.01185 1.19519 0.95864 0.95280 0.86146 0.91484 0.93275 0.93889 0.91848 0.91338 0.93676 0.93585 0.90664 0.89805 0.94251 0.94469 0.79451 0.94281 0.76206 0.77182 0.77961 0.77612 0.89105 0.87731 0.90932 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.12 -2.72 5.93 30.59 0.18 -2.54 16 3 C -0.10 -2.94 3.81 30.59 0.12 -2.82 16 4 C -0.12 -3.24 4.89 30.59 0.15 -3.09 16 5 C 0.15 5.32 2.41 44.99 0.11 5.43 16 6 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 7 C 0.15 5.72 5.82 86.38 0.50 6.22 16 8 N -0.74 -37.80 5.43 -343.46 -1.87 -39.66 16 9 C -0.24 -13.53 9.99 84.03 0.84 -12.69 16 10 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 11 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 12 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 13 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 17 N -0.71 -24.78 4.46 -446.61 -1.99 -26.77 16 18 C 0.60 22.52 6.35 86.42 0.55 23.07 16 19 O -0.58 -23.88 12.83 -4.39 -0.06 -23.93 16 20 C -0.35 -12.13 6.17 -19.90 -0.12 -12.25 16 21 C 0.12 3.93 11.44 85.42 0.98 4.91 16 22 N -0.34 -10.83 12.57 -56.62 -0.71 -11.54 16 23 N -0.28 -7.65 3.86 -187.28 -0.72 -8.37 16 24 C 0.10 1.70 11.17 83.30 0.93 2.63 16 25 C -0.14 -1.72 9.67 22.03 0.21 -1.50 16 26 C -0.02 -0.40 5.89 -19.82 -0.12 -0.51 16 27 C -0.12 -1.12 10.03 71.24 0.71 -0.41 16 28 C -0.15 -3.88 9.38 22.30 0.21 -3.67 16 29 C 0.15 4.84 6.76 39.49 0.27 5.11 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 36 H 0.05 1.51 5.65 -2.39 -0.01 1.50 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.07 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.37 20.88 7.33 -92.70 -0.68 20.20 16 42 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.40 13.46 7.52 -92.70 -0.70 12.76 16 44 H 0.21 5.67 7.46 -2.91 -0.02 5.64 16 45 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.10 0.41 8.10 -2.38 -0.02 0.39 16 49 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 50 H 0.14 4.19 7.12 -2.91 -0.02 4.17 16 Total: -1.00 -77.85 408.59 3.24 -74.61 By element: Atomic # 1 Polarization: 46.08 SS G_CDS: -0.42 Total: 45.66 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.70 Total: 1.68 kcal Atomic # 7 Polarization: -141.55 SS G_CDS: -5.01 Total: -146.56 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.93 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.85 3.24 -74.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675222751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.613 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds