Wall clock time and date at job start Wed Apr 1 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47075 * 2 1 4 4 C 1.52992 * 109.47255 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47255 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47098 * 54.99720 * 5 4 3 7 7 C 1.53004 * 109.47083 * 174.99797 * 5 4 3 8 8 N 1.46502 * 109.46925 * 175.00128 * 7 5 4 9 9 C 1.36936 * 119.99899 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99864 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99982 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00171 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47089 * 89.99831 * 13 11 9 15 15 H 1.48502 * 109.47036 * 209.99796 * 13 11 9 16 16 H 1.48499 * 109.46833 * 330.00340 * 13 11 9 17 17 N 1.46498 * 109.47257 * 294.99786 * 5 4 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 5 4 19 19 O 1.21643 * 119.99981 * 0.28057 * 18 17 5 20 20 C 1.47224 * 119.99940 * 180.27642 * 18 17 5 21 21 C 1.38937 * 120.86261 * 359.72794 * 20 18 17 22 22 C 1.39742 * 119.29749 * 179.74883 * 21 20 18 23 23 C 1.50695 * 119.43197 * 180.29972 * 22 21 20 24 24 C 1.35118 * 121.13988 * 0.53785 * 22 21 20 25 25 N 1.36157 * 121.71789 * 359.71312 * 24 22 21 26 26 C 1.36999 * 132.63960 * 179.97438 * 25 24 22 27 27 C 1.34960 * 107.15171 * 180.02562 * 26 25 24 28 28 N 1.33741 * 108.60227 * 0.02562 * 27 26 25 29 29 C 1.31983 * 109.17265 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47104 * 60.00402 * 1 2 3 31 31 H 1.09005 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47411 * 300.00270 * 1 2 3 33 33 H 1.08997 * 109.47411 * 239.99730 * 2 1 3 34 34 H 1.09001 * 109.46897 * 120.00111 * 2 1 3 35 35 H 1.09005 * 109.46934 * 59.99534 * 3 2 1 36 36 H 1.08997 * 109.46770 * 300.00272 * 3 2 1 37 37 H 1.08997 * 109.47253 * 59.99716 * 4 3 2 38 38 H 1.09001 * 109.47082 * 299.99695 * 4 3 2 39 39 H 1.08997 * 109.47038 * 294.99798 * 7 5 4 40 40 H 1.08999 * 109.47047 * 55.00424 * 7 5 4 41 41 H 0.96997 * 120.00059 * 359.97438 * 8 7 5 42 42 H 0.96998 * 119.99735 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00384 * 265.00562 * 17 5 4 44 44 H 1.08000 * 120.35049 * 359.96966 * 21 20 18 45 45 H 1.09001 * 109.46992 * 270.23128 * 23 22 21 46 46 H 1.08998 * 109.47472 * 30.22840 * 23 22 21 47 47 H 1.09004 * 109.47079 * 150.23693 * 23 22 21 48 48 H 1.07996 * 119.13779 * 179.74065 * 24 22 21 49 49 H 1.08005 * 126.42530 * 0.02997 * 26 25 24 50 50 H 1.07994 * 125.69835 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6449 3.4238 0.8430 7 6 5.6047 2.8868 0.1277 8 7 6.1030 4.2594 0.0086 9 6 7.4468 4.5095 0.0904 10 1 8.1393 3.6949 0.2432 11 6 7.9189 5.8099 -0.0230 12 7 9.2106 6.0503 0.0561 13 14 6.7212 7.2187 -0.2879 14 1 6.2885 7.7546 1.0277 15 1 7.3865 8.2943 -1.0661 16 1 5.5363 6.7269 -1.0359 17 7 3.6930 3.5404 -1.2505 18 6 2.4736 4.1024 -1.3679 19 8 1.6963 4.0700 -0.4328 20 6 2.0824 4.7557 -2.6279 21 6 2.9581 4.8081 -3.7054 22 6 2.5509 5.4318 -4.8877 23 6 3.4958 5.4844 -6.0605 24 6 1.3264 5.9926 -4.9961 25 7 0.4357 5.9712 -3.9665 26 6 -0.8375 6.4586 -3.8306 27 6 -1.2504 6.1507 -2.5832 28 7 -0.2677 5.4927 -1.9586 29 6 0.7618 5.3736 -2.7759 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8890 38 1 3.9329 0.9289 0.8909 39 1 5.8893 2.4800 1.0980 40 1 6.0357 2.2739 -0.6639 41 1 5.4810 4.9909 -0.1290 42 1 9.5405 6.9590 -0.0235 43 1 4.3127 3.5662 -1.9962 44 1 3.9417 4.3684 -3.6310 45 1 4.1014 6.3886 -5.9989 46 1 4.1460 4.6098 -6.0429 47 1 2.9234 5.4931 -6.9881 48 1 1.0468 6.4699 -5.9236 49 1 -1.4044 6.9895 -4.5810 50 1 -2.2132 6.3955 -2.1597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675227796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:12 Heat of formation + Delta-G solvation = 57.394631 kcal Electronic energy + Delta-G solvation = -30814.380762 eV Core-core repulsion = 26843.052941 eV Total energy + Delta-G solvation = -3971.327821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.85131 -39.83525 -37.90484 -36.57595 -34.98400 -33.86531 -33.48702 -32.36992 -31.30476 -30.52908 -28.92422 -27.50020 -26.97126 -24.83604 -24.08986 -22.60829 -21.94671 -21.70002 -20.92439 -20.68334 -20.22453 -18.21426 -17.71619 -17.33447 -16.56732 -16.20028 -16.03705 -15.39820 -15.12484 -14.77669 -14.46261 -14.25531 -14.15743 -13.96817 -13.79986 -13.69956 -13.40773 -13.02983 -12.88289 -12.76353 -12.72225 -12.44186 -12.29677 -12.14482 -12.03086 -11.61831 -11.39701 -11.34110 -11.01957 -10.92774 -10.83797 -10.77267 -10.32215 -10.26984 -10.12125 -10.10858 -9.63728 -9.63058 -8.96320 -8.87762 -8.72122 -8.06336 -7.29062 -5.81286 -3.17237 0.13659 1.06712 2.30245 2.59391 2.90707 3.28880 3.33825 3.39643 3.44283 3.64619 3.92737 4.11357 4.32638 4.48272 4.55521 4.62821 4.79547 5.00384 5.05211 5.09763 5.18610 5.21433 5.26772 5.28888 5.34773 5.41400 5.46638 5.49659 5.50418 5.59007 5.70721 5.74361 5.80001 5.84411 5.91073 5.95075 6.04171 6.13148 6.17115 6.17758 6.27454 6.38582 6.46286 6.48585 6.58177 6.68799 6.81064 6.86212 7.71559 7.82777 7.94555 8.37409 8.43927 9.16565 9.88929 10.08443 11.36885 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007219 B = 0.004626 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.515273 B = 6051.701321 C = 8589.498116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.136 3.864 6 H 0.090 0.910 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.246 4.246 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.932 5.932 13 Si 0.880 3.120 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.711 5.711 18 C 0.558 3.442 19 O -0.500 6.500 20 C -0.084 4.084 21 C -0.055 4.055 22 C -0.117 4.117 23 C -0.106 4.106 24 C 0.072 3.928 25 N -0.370 5.370 26 C -0.101 4.101 27 C 0.026 3.974 28 N -0.458 5.458 29 C 0.251 3.749 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.400 0.600 44 H 0.151 0.849 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.163 0.837 49 H 0.183 0.817 50 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.877 -5.193 -13.858 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.032 3.968 6 H 0.108 0.892 7 C 0.022 3.978 8 N -0.402 5.402 9 C -0.375 4.375 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.580 5.580 13 Si 0.711 3.289 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.364 5.364 18 C 0.343 3.657 19 O -0.375 6.375 20 C -0.090 4.090 21 C -0.079 4.079 22 C -0.120 4.120 23 C -0.163 4.163 24 C -0.050 4.050 25 N -0.042 5.042 26 C -0.231 4.231 27 C -0.125 4.125 28 N -0.176 5.176 29 C 0.004 3.996 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.236 0.764 44 H 0.169 0.831 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.181 0.819 49 H 0.200 0.800 50 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.303 -5.510 -12.343 23.565 hybrid contribution -0.462 1.665 -1.498 2.287 sum -19.765 -3.845 -13.841 24.434 Atomic orbital electron populations 1.21736 0.96254 1.00723 1.01953 1.21557 0.95644 0.97665 1.01281 1.21679 0.94587 0.95432 1.03382 1.21972 0.96212 0.95898 1.02393 1.21401 0.96046 0.92851 0.86511 0.89196 1.20955 0.88945 0.88250 0.99694 1.42715 1.05374 1.02648 1.89416 1.19048 0.82035 0.94234 1.42220 0.89080 1.24635 0.95431 0.96839 1.01847 1.69699 1.11400 1.19960 1.56948 0.86624 0.80725 0.83353 0.78232 1.21021 1.21725 1.20419 1.45899 1.15421 1.57598 1.17436 1.17461 0.82442 0.79098 0.86666 1.90880 1.50682 1.57097 1.38861 1.20288 0.90271 1.02362 0.96039 1.21699 0.99150 0.96037 0.90968 1.19299 0.94441 1.00832 0.97445 1.20736 0.97771 1.03925 0.93872 1.21413 0.89811 1.01546 0.92278 1.42857 1.12135 1.37276 1.11912 1.22648 0.85647 1.12346 1.02449 1.22684 0.99514 0.99170 0.91125 1.70830 0.99033 1.18994 1.28711 1.21535 0.95665 1.00094 0.82270 0.93039 0.93385 0.92736 0.92691 0.92399 0.91404 0.91790 0.91827 0.90875 0.93847 0.94917 0.80396 0.93027 0.76434 0.83133 0.90233 0.90230 0.91071 0.81932 0.79976 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.44 5.93 -26.73 -0.16 -1.60 16 3 C -0.11 -1.57 3.81 -26.74 -0.10 -1.67 16 4 C -0.13 -1.65 4.89 -26.74 -0.13 -1.78 16 5 C 0.14 2.15 2.42 -67.93 -0.16 1.98 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.15 2.70 5.82 -4.04 -0.02 2.68 16 8 N -0.76 -17.31 5.24 -59.91 -0.31 -17.62 16 9 C -0.25 -6.75 10.47 -15.06 -0.16 -6.91 16 10 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 12 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 13 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 14 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 17 N -0.71 -10.84 4.43 -54.94 -0.24 -11.08 16 18 C 0.56 9.41 6.33 -12.61 -0.08 9.33 16 19 O -0.50 -9.87 13.32 5.24 0.07 -9.80 16 20 C -0.08 -1.27 6.06 -102.64 -0.62 -1.89 16 21 C -0.05 -0.64 9.26 -38.76 -0.36 -1.00 16 22 C -0.12 -1.09 5.82 -105.17 -0.61 -1.71 16 23 C -0.11 -0.65 9.97 36.00 0.36 -0.30 16 24 C 0.07 0.67 10.48 -16.74 -0.18 0.49 16 25 N -0.37 -4.50 2.94 -61.09 -0.18 -4.68 16 26 C -0.10 -1.05 11.76 -16.41 -0.19 -1.24 16 27 C 0.03 0.32 11.83 -17.88 -0.21 0.11 16 28 N -0.46 -7.78 10.70 -11.32 -0.12 -7.90 16 29 C 0.25 3.98 7.67 -154.14 -1.18 2.80 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 36 H 0.06 1.00 5.63 -51.93 -0.29 0.71 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.36 8.42 5.20 -40.82 -0.21 8.21 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.40 5.49 6.70 -40.82 -0.27 5.22 16 44 H 0.15 1.49 6.48 -52.49 -0.34 1.15 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 47 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 48 H 0.16 0.86 8.04 -52.49 -0.42 0.44 16 49 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 50 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -36.35 404.49 -10.02 -46.37 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.84 Total: 11.08 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.54 Total: -1.89 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -0.08 Total: -69.36 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.35 -10.02 -46.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675227796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.760 kcal (2) G-P(sol) polarization free energy of solvation -36.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds