Wall clock time and date at job start Wed Apr 1 2020 04:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47075 * 2 1 4 4 C 1.52992 * 109.47255 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47255 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47098 * 54.99720 * 5 4 3 7 7 C 1.53004 * 109.47083 * 174.99797 * 5 4 3 8 8 N 1.46502 * 109.46925 * 175.00128 * 7 5 4 9 9 C 1.36936 * 119.99899 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99864 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99982 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00171 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47089 * 89.99831 * 13 11 9 15 15 H 1.48502 * 109.47036 * 209.99796 * 13 11 9 16 16 H 1.48499 * 109.46833 * 330.00340 * 13 11 9 17 17 N 1.46498 * 109.47257 * 294.99786 * 5 4 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 5 4 19 19 O 1.21643 * 119.99981 * 0.28057 * 18 17 5 20 20 C 1.47224 * 119.99940 * 180.27642 * 18 17 5 21 21 C 1.38937 * 120.86261 * 359.72794 * 20 18 17 22 22 C 1.39742 * 119.29749 * 179.74883 * 21 20 18 23 23 C 1.50695 * 119.43197 * 180.29972 * 22 21 20 24 24 C 1.35118 * 121.13988 * 0.53785 * 22 21 20 25 25 N 1.36157 * 121.71789 * 359.71312 * 24 22 21 26 26 C 1.36999 * 132.63960 * 179.97438 * 25 24 22 27 27 C 1.34960 * 107.15171 * 180.02562 * 26 25 24 28 28 N 1.33741 * 108.60227 * 0.02562 * 27 26 25 29 29 C 1.31983 * 109.17265 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47104 * 60.00402 * 1 2 3 31 31 H 1.09005 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47411 * 300.00270 * 1 2 3 33 33 H 1.08997 * 109.47411 * 239.99730 * 2 1 3 34 34 H 1.09001 * 109.46897 * 120.00111 * 2 1 3 35 35 H 1.09005 * 109.46934 * 59.99534 * 3 2 1 36 36 H 1.08997 * 109.46770 * 300.00272 * 3 2 1 37 37 H 1.08997 * 109.47253 * 59.99716 * 4 3 2 38 38 H 1.09001 * 109.47082 * 299.99695 * 4 3 2 39 39 H 1.08997 * 109.47038 * 294.99798 * 7 5 4 40 40 H 1.08999 * 109.47047 * 55.00424 * 7 5 4 41 41 H 0.96997 * 120.00059 * 359.97438 * 8 7 5 42 42 H 0.96998 * 119.99735 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00384 * 265.00562 * 17 5 4 44 44 H 1.08000 * 120.35049 * 359.96966 * 21 20 18 45 45 H 1.09001 * 109.46992 * 270.23128 * 23 22 21 46 46 H 1.08998 * 109.47472 * 30.22840 * 23 22 21 47 47 H 1.09004 * 109.47079 * 150.23693 * 23 22 21 48 48 H 1.07996 * 119.13779 * 179.74065 * 24 22 21 49 49 H 1.08005 * 126.42530 * 0.02997 * 26 25 24 50 50 H 1.07994 * 125.69835 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 1 3.6449 3.4238 0.8430 7 6 5.6047 2.8868 0.1277 8 7 6.1030 4.2594 0.0086 9 6 7.4468 4.5095 0.0904 10 1 8.1393 3.6949 0.2432 11 6 7.9189 5.8099 -0.0230 12 7 9.2106 6.0503 0.0561 13 14 6.7212 7.2187 -0.2879 14 1 6.2885 7.7546 1.0277 15 1 7.3865 8.2943 -1.0661 16 1 5.5363 6.7269 -1.0359 17 7 3.6930 3.5404 -1.2505 18 6 2.4736 4.1024 -1.3679 19 8 1.6963 4.0700 -0.4328 20 6 2.0824 4.7557 -2.6279 21 6 2.9581 4.8081 -3.7054 22 6 2.5509 5.4318 -4.8877 23 6 3.4958 5.4844 -6.0605 24 6 1.3264 5.9926 -4.9961 25 7 0.4357 5.9712 -3.9665 26 6 -0.8375 6.4586 -3.8306 27 6 -1.2504 6.1507 -2.5832 28 7 -0.2677 5.4927 -1.9586 29 6 0.7618 5.3736 -2.7759 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8890 38 1 3.9329 0.9289 0.8909 39 1 5.8893 2.4800 1.0980 40 1 6.0357 2.2739 -0.6639 41 1 5.4810 4.9909 -0.1290 42 1 9.5405 6.9590 -0.0235 43 1 4.3127 3.5662 -1.9962 44 1 3.9417 4.3684 -3.6310 45 1 4.1014 6.3886 -5.9989 46 1 4.1460 4.6098 -6.0429 47 1 2.9234 5.4931 -6.9881 48 1 1.0468 6.4699 -5.9236 49 1 -1.4044 6.9895 -4.5810 50 1 -2.2132 6.3955 -2.1597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675227796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:11 Heat of formation + Delta-G solvation = 34.329374 kcal Electronic energy + Delta-G solvation = -30815.380947 eV Core-core repulsion = 26843.052941 eV Total energy + Delta-G solvation = -3972.328006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.73268 -41.07324 -38.74222 -37.94165 -36.35759 -35.22387 -34.65008 -33.44788 -32.93599 -31.75680 -29.83542 -28.94660 -27.61340 -26.01127 -25.45090 -23.58483 -23.55232 -22.51930 -22.12184 -21.79221 -21.44575 -19.83748 -18.91655 -18.44129 -17.64681 -17.28705 -17.00531 -16.72485 -16.31289 -16.03654 -15.79113 -15.75373 -15.18967 -14.98755 -14.83495 -14.56383 -14.54833 -14.36878 -14.29681 -13.94997 -13.69637 -13.54214 -13.32330 -13.23465 -12.96963 -12.94969 -12.85464 -12.61127 -12.44817 -12.14979 -12.01965 -11.91657 -11.84985 -11.75719 -11.45716 -11.36857 -11.14465 -11.04468 -10.81768 -10.01208 -9.70825 -9.32006 -8.93641 -8.04240 -5.36581 -0.75231 0.22107 1.31050 1.37176 1.40697 1.46949 1.67435 1.92072 2.16534 2.43766 2.58104 3.06220 3.28329 3.33678 3.46356 3.55937 3.74354 3.81262 3.88852 4.06071 4.11871 4.26099 4.30538 4.31240 4.40347 4.44022 4.50183 4.54768 4.58907 4.66231 4.76373 4.83523 4.87507 4.91672 4.91959 4.97369 5.07020 5.12086 5.13775 5.19501 5.20244 5.30545 5.38943 5.45687 5.55832 5.60523 5.60866 5.76351 6.01510 6.19913 6.52559 6.92410 7.05647 7.23251 7.81583 7.99470 9.17196 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007219 B = 0.004626 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.515273 B = 6051.701321 C = 8589.498116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.064 0.936 7 C 0.150 3.850 8 N -0.758 5.758 9 C -0.227 4.227 10 H 0.068 0.932 11 C -0.051 4.051 12 N -0.978 5.978 13 Si 0.940 3.060 14 H -0.293 1.293 15 H -0.290 1.290 16 H -0.258 1.258 17 N -0.705 5.705 18 C 0.557 3.443 19 O -0.542 6.542 20 C -0.133 4.133 21 C -0.035 4.035 22 C -0.128 4.128 23 C -0.102 4.102 24 C 0.085 3.915 25 N -0.374 5.374 26 C -0.079 4.079 27 C -0.004 4.004 28 N -0.518 5.518 29 C 0.220 3.780 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.362 0.638 42 H 0.258 0.742 43 H 0.408 0.592 44 H 0.164 0.836 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.212 0.788 49 H 0.232 0.768 50 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.166 -5.285 -17.175 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.155 4.155 5 C 0.041 3.959 6 H 0.082 0.918 7 C 0.024 3.976 8 N -0.403 5.403 9 C -0.358 4.358 10 H 0.085 0.915 11 C -0.243 4.243 12 N -0.629 5.629 13 Si 0.769 3.231 14 H -0.221 1.221 15 H -0.216 1.216 16 H -0.183 1.183 17 N -0.359 5.359 18 C 0.344 3.656 19 O -0.421 6.421 20 C -0.139 4.139 21 C -0.059 4.059 22 C -0.131 4.131 23 C -0.159 4.159 24 C -0.037 4.037 25 N -0.046 5.046 26 C -0.208 4.208 27 C -0.152 4.152 28 N -0.237 5.237 29 C -0.028 4.028 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.195 0.805 42 H 0.067 0.933 43 H 0.245 0.755 44 H 0.181 0.819 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.116 0.884 48 H 0.229 0.771 49 H 0.249 0.751 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.620 -5.639 -15.688 26.516 hybrid contribution -0.093 1.647 -0.525 1.731 sum -20.713 -3.992 -16.213 26.605 Atomic orbital electron populations 1.21726 0.96236 1.01712 1.00893 1.21533 0.95676 0.96016 1.02466 1.21530 0.95031 0.96557 1.01092 1.21911 0.95543 0.94118 1.03941 1.21217 0.94148 0.94371 0.86161 0.91823 1.21113 0.90377 0.85897 1.00261 1.42735 1.03665 1.04704 1.89238 1.19058 0.83573 0.93417 1.39731 0.91452 1.25272 0.96773 0.99309 1.02988 1.69844 1.13377 1.20328 1.59380 0.85641 0.79317 0.80369 0.77745 1.22059 1.21591 1.18321 1.45811 1.15317 1.57415 1.17313 1.17814 0.82126 0.78508 0.87107 1.90844 1.51832 1.58859 1.40515 1.20166 0.91633 1.05720 0.96414 1.22040 0.98789 0.94253 0.90787 1.19708 0.95378 1.00468 0.97532 1.20815 0.97454 1.04218 0.93435 1.22278 0.88989 0.99754 0.92705 1.43128 1.13043 1.36854 1.11592 1.23386 0.84771 1.10253 1.02374 1.23228 0.99949 0.99644 0.92403 1.70715 1.00804 1.21145 1.31059 1.21631 0.95847 1.01519 0.83761 0.94280 0.91282 0.93693 0.91403 0.91137 0.94048 0.93905 0.89979 0.89440 0.93625 0.93095 0.80491 0.93314 0.75524 0.81876 0.89987 0.89816 0.88350 0.77139 0.75146 0.78130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.91 71.98 0.71 -2.62 16 2 C -0.12 -2.67 5.93 30.60 0.18 -2.49 16 3 C -0.10 -2.95 3.81 30.59 0.12 -2.84 16 4 C -0.12 -2.96 4.89 30.59 0.15 -2.81 16 5 C 0.15 4.61 2.42 44.99 0.11 4.72 16 6 H 0.06 2.37 7.58 -2.39 -0.02 2.36 16 7 C 0.15 5.30 5.82 86.38 0.50 5.81 16 8 N -0.76 -34.37 5.24 -343.45 -1.80 -36.17 16 9 C -0.23 -12.51 10.47 84.03 0.88 -11.63 16 10 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 11 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 12 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 13 Si 0.94 46.21 27.74 68.60 1.90 48.11 16 14 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 17 N -0.71 -21.63 4.43 -445.98 -1.97 -23.60 16 18 C 0.56 19.55 6.33 86.60 0.55 20.10 16 19 O -0.54 -22.93 13.32 -4.17 -0.06 -22.98 16 20 C -0.13 -4.09 6.06 -18.58 -0.11 -4.20 16 21 C -0.03 -0.76 9.26 22.80 0.21 -0.55 16 22 C -0.13 -1.98 5.82 -20.22 -0.12 -2.10 16 23 C -0.10 -0.83 9.97 71.23 0.71 -0.12 16 24 C 0.08 1.23 10.48 83.30 0.87 2.10 16 25 N -0.37 -8.31 2.94 -347.19 -1.02 -9.33 16 26 C -0.08 -1.42 11.76 83.13 0.98 -0.44 16 27 C 0.00 -0.09 11.83 83.65 0.99 0.90 16 28 N -0.52 -18.35 10.70 -189.73 -2.03 -20.38 16 29 C 0.22 7.04 7.67 135.76 1.04 8.08 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.04 1.37 7.84 -2.38 -0.02 1.35 16 36 H 0.04 1.40 5.63 -2.39 -0.01 1.39 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.36 16.60 5.20 -92.71 -0.48 16.12 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.41 10.89 6.70 -92.71 -0.62 10.27 16 44 H 0.16 2.95 6.48 -2.91 -0.02 2.93 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 47 H 0.10 0.30 8.05 -2.39 -0.02 0.28 16 48 H 0.21 0.92 8.04 -2.91 -0.02 0.90 16 49 H 0.23 1.62 8.06 -2.91 -0.02 1.60 16 50 H 0.20 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -84.34 404.49 3.36 -80.99 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.21 Total: 35.23 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 8.24 Total: 9.36 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -6.52 Total: -150.71 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.98 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -84.34 3.36 -80.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675227796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.316 kcal (2) G-P(sol) polarization free energy of solvation -84.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds