Wall clock time and date at job start Wed Apr 1 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31877 * 118.95204 * 2 1 4 4 C 1.32130 * 120.96625 * 179.97438 * 3 2 1 5 5 C 1.39968 * 118.92516 * 0.02562 * 4 3 2 6 6 C 1.47827 * 120.94111 * 180.02562 * 5 4 3 7 7 O 1.21555 * 120.00359 * 230.22470 * 6 5 4 8 8 N 1.34786 * 119.99834 * 50.22961 * 6 5 4 9 9 C 1.46923 * 120.62697 * 5.63357 * 8 6 5 10 10 C 1.53627 * 108.54075 * 126.36767 * 9 8 6 11 11 C 1.53036 * 109.24166 * 54.85694 * 10 9 8 12 12 C 1.53041 * 109.53724 * 298.50952 * 11 10 9 13 13 C 1.46916 * 120.63107 * 185.90955 * 8 6 5 14 14 H 1.09002 * 109.58708 * 113.79996 * 13 8 6 15 15 C 1.53004 * 109.59019 * 353.37527 * 13 8 6 16 16 N 1.46503 * 109.46905 * 68.67947 * 15 13 8 17 17 C 1.36936 * 120.00067 * 174.84165 * 16 15 13 18 18 H 1.07999 * 119.99732 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00109 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99894 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00224 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47300 * 89.99384 * 21 19 17 23 23 H 1.48494 * 109.47382 * 209.99781 * 21 19 17 24 24 H 1.48506 * 109.46781 * 329.99805 * 21 19 17 25 25 C 1.39928 * 118.12075 * 359.97438 * 5 4 3 26 26 C 1.50697 * 120.53979 * 179.97438 * 25 5 4 27 27 C 1.53001 * 117.50105 * 193.44526 * 26 25 5 28 28 C 1.53002 * 117.49653 * 124.78311 * 26 25 5 29 29 N 1.31856 * 118.94860 * 179.73511 * 2 1 3 30 30 H 1.09002 * 109.47569 * 90.00166 * 1 2 3 31 31 H 1.09005 * 109.47292 * 209.99548 * 1 2 3 32 32 H 1.08999 * 109.47652 * 329.99788 * 1 2 3 33 33 H 1.08002 * 120.53937 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.58734 * 246.19908 * 9 8 6 35 35 H 1.08997 * 109.59253 * 6.62744 * 9 8 6 36 36 H 1.08997 * 109.63389 * 294.86054 * 10 9 8 37 37 H 1.09005 * 109.42915 * 174.72454 * 10 9 8 38 38 H 1.09000 * 109.46259 * 178.49043 * 11 10 9 39 39 H 1.09004 * 109.45200 * 58.52380 * 11 10 9 40 40 H 1.09008 * 109.49723 * 301.41199 * 12 11 10 41 41 H 1.08996 * 109.50034 * 181.31981 * 12 11 10 42 42 H 1.09001 * 109.47234 * 188.67714 * 15 13 8 43 43 H 1.09002 * 109.47167 * 308.68535 * 15 13 8 44 44 H 0.97003 * 120.00395 * 354.84623 * 16 15 13 45 45 H 0.97007 * 120.00016 * 180.02562 * 20 19 17 46 46 H 1.09002 * 115.54857 * 339.11990 * 26 25 5 47 47 H 1.09000 * 117.49768 * 359.97438 * 27 26 25 48 48 H 1.08992 * 117.49946 * 145.02125 * 27 26 25 49 49 H 1.09003 * 117.50156 * 214.97935 * 28 26 25 50 50 H 1.09000 * 117.50148 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0016 7 8 6.2722 -0.6733 -0.8073 8 7 6.3370 0.7461 0.8997 9 6 5.6208 1.4674 1.9606 10 6 6.2324 1.0776 3.3149 11 6 7.7394 1.3420 3.2826 12 6 8.3870 0.4803 2.1962 13 6 7.8003 0.8587 0.8326 14 1 8.0771 1.8841 0.5876 15 6 8.3393 -0.0911 -0.2390 16 7 7.9314 0.3848 -1.5632 17 6 8.3875 -0.2479 -2.6886 18 1 9.0476 -1.0981 -2.6001 19 6 8.0005 0.2027 -3.9433 20 7 8.4386 -0.4059 -5.0250 21 14 6.8582 1.6727 -4.0964 22 1 7.6624 2.9189 -4.1705 23 1 6.0400 1.5376 -5.3282 24 1 5.9642 1.7303 -2.9120 25 6 3.4661 -1.2003 0.0005 26 6 4.1856 -2.5244 -0.0001 27 6 3.3631 -3.7753 -0.3156 28 6 3.8430 -3.5150 1.1145 29 7 2.1452 -1.1538 0.0053 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 3.9816 2.1493 0.0009 34 1 5.7234 2.5415 1.8057 35 1 4.5662 1.1925 1.9417 36 1 6.0526 0.0199 3.5072 37 1 5.7752 1.6742 4.1044 38 1 8.1729 1.0919 4.2509 39 1 7.9186 2.3951 3.0656 40 1 8.1870 -0.5719 2.3990 41 1 9.4634 0.6517 2.1893 42 1 9.4275 -0.1218 -0.1833 43 1 7.9386 -1.0911 -0.0731 44 1 7.3382 1.1483 -1.6427 45 1 8.1685 -0.0907 -5.9018 46 1 5.2173 -2.4986 -0.3510 47 1 2.3014 -3.6406 -0.5223 48 1 3.8536 -4.5727 -0.8738 49 1 4.6492 -4.1414 1.4966 50 1 3.0976 -3.2089 1.8484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690486046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:37 Heat of formation + Delta-G solvation = 94.638262 kcal Electronic energy + Delta-G solvation = -32333.825917 eV Core-core repulsion = 28364.113101 eV Total energy + Delta-G solvation = -3969.712816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49422 -40.01135 -37.48013 -36.91801 -34.91540 -33.66124 -33.07650 -32.47016 -31.91860 -30.28526 -28.92076 -26.46721 -25.52681 -24.63831 -23.56463 -22.56902 -22.34804 -21.63830 -20.94681 -20.65429 -19.35231 -17.94717 -17.52316 -16.72237 -16.41903 -15.79214 -15.34977 -15.31765 -14.90957 -14.54026 -14.43459 -14.28578 -13.99557 -13.85293 -13.64326 -13.48762 -13.13061 -12.75682 -12.66686 -12.62686 -12.47814 -12.40538 -11.99528 -11.84375 -11.59768 -11.48303 -11.34064 -11.27775 -11.15375 -10.92387 -10.80551 -10.71772 -10.48584 -10.31942 -10.14631 -10.04272 -9.44497 -9.33426 -9.21426 -8.82973 -8.55258 -8.29909 -6.86742 -5.60905 -2.87061 0.58238 0.95056 3.00029 3.09789 3.44162 3.46172 3.49863 3.52519 3.73096 3.93772 4.05625 4.22469 4.51889 4.64718 4.72948 4.74778 4.82714 4.88362 4.97729 5.00503 5.02912 5.07315 5.19307 5.24305 5.32486 5.33767 5.35649 5.46470 5.60099 5.61243 5.67885 5.68481 5.71725 5.78144 5.80918 5.86200 5.89597 5.96101 5.97561 6.08457 6.13391 6.24066 6.29757 6.31287 6.48744 6.76121 6.87714 7.09727 7.65451 7.98654 8.14367 8.56230 8.61031 9.37609 10.10957 10.30878 11.58802 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008120 B = 0.005468 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.243067 B = 5119.888744 C = 6440.855427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.324 3.676 3 N -0.526 5.526 4 C 0.178 3.822 5 C -0.219 4.219 6 C 0.525 3.475 7 O -0.429 6.429 8 N -0.610 5.610 9 C 0.107 3.893 10 C -0.132 4.132 11 C -0.117 4.117 12 C -0.126 4.126 13 C 0.139 3.861 14 H 0.071 0.929 15 C 0.164 3.836 16 N -0.722 5.722 17 C -0.210 4.210 18 H 0.087 0.913 19 C -0.001 4.001 20 N -0.941 5.941 21 Si 0.882 3.118 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.284 1.284 25 C 0.256 3.744 26 C -0.132 4.132 27 C -0.150 4.150 28 C -0.155 4.155 29 N -0.520 5.520 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.049 0.951 44 H 0.355 0.645 45 H 0.255 0.745 46 H 0.146 0.854 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 1.453 20.578 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 N -0.241 5.241 4 C 0.011 3.989 5 C -0.226 4.226 6 C 0.308 3.692 7 O -0.296 6.296 8 N -0.348 5.348 9 C -0.016 4.016 10 C -0.170 4.170 11 C -0.155 4.155 12 C -0.165 4.165 13 C 0.037 3.963 14 H 0.089 0.911 15 C 0.037 3.963 16 N -0.366 5.366 17 C -0.340 4.340 18 H 0.105 0.895 19 C -0.196 4.196 20 N -0.591 5.591 21 Si 0.714 3.286 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.210 1.210 25 C 0.110 3.890 26 C -0.151 4.151 27 C -0.187 4.187 28 C -0.193 4.193 29 N -0.234 5.234 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.187 0.813 45 H 0.066 0.934 46 H 0.164 0.836 47 H 0.124 0.876 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.203 0.899 19.944 23.399 hybrid contribution -0.041 1.408 -0.343 1.449 sum -12.245 2.306 19.601 23.226 Atomic orbital electron populations 1.20571 0.85597 1.04049 1.04000 1.23331 0.98196 0.83332 0.89423 1.68232 1.09651 1.30114 1.16078 1.23417 0.89381 0.97762 0.88312 1.21700 0.97317 0.95687 1.07941 1.17820 0.85286 0.83698 0.82396 1.91229 1.65832 1.37192 1.35397 1.47797 1.06865 1.50062 1.30087 1.21823 0.96241 0.96425 0.87146 1.21967 0.96421 1.02105 0.96549 1.21501 0.94918 1.00200 0.98890 1.21899 1.00196 1.00494 0.93947 1.21606 0.78170 1.00649 0.95923 0.91124 1.20890 0.95529 0.96187 0.83648 1.42650 1.56809 1.35708 1.01436 1.18995 1.21560 1.10159 0.83305 0.89474 1.24547 1.00489 0.99137 0.95393 1.69692 1.49689 1.42780 0.96917 0.86569 0.81480 0.84018 0.76568 1.21540 1.22122 1.21039 1.20792 0.88319 0.93554 0.86324 1.21351 1.01263 0.85894 1.06555 1.22954 1.00779 0.97212 0.97784 1.22940 1.03297 1.01095 0.91952 1.67994 1.09116 1.30125 1.16192 0.89501 0.89621 0.89584 0.81363 0.91517 0.90676 0.91517 0.91148 0.91801 0.91807 0.91295 0.90556 0.95523 0.93369 0.81257 0.93449 0.83607 0.87621 0.88096 0.88083 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.31 36.01 0.37 -0.41 16 2 C 0.32 4.44 7.64 -157.07 -1.20 3.24 16 3 N -0.53 -7.61 10.31 -10.39 -0.11 -7.72 16 4 C 0.18 2.62 8.94 -16.78 -0.15 2.47 16 5 C -0.22 -3.58 4.76 -104.69 -0.50 -4.08 16 6 C 0.52 9.33 6.10 -12.33 -0.08 9.25 16 7 O -0.43 -9.47 8.86 5.32 0.05 -9.42 16 8 N -0.61 -8.90 2.97 -166.07 -0.49 -9.39 16 9 C 0.11 1.16 5.45 -3.49 -0.02 1.14 16 10 C -0.13 -1.18 6.10 -26.39 -0.16 -1.35 16 11 C -0.12 -1.06 5.88 -26.69 -0.16 -1.21 16 12 C -0.13 -1.43 5.36 -26.61 -0.14 -1.58 16 13 C 0.14 2.09 2.93 -67.61 -0.20 1.89 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.16 3.25 4.87 -4.04 -0.02 3.23 16 16 N -0.72 -17.80 3.01 -59.90 -0.18 -17.99 16 17 C -0.21 -6.19 10.18 -15.06 -0.15 -6.35 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 20 N -0.94 -30.97 13.97 55.49 0.78 -30.20 16 21 Si 0.88 23.83 27.74 -169.99 -4.71 19.12 16 22 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.29 -8.13 7.11 56.52 0.40 -7.73 16 24 H -0.28 -7.39 6.52 56.52 0.37 -7.02 16 25 C 0.26 4.11 6.50 -81.82 -0.53 3.58 16 26 C -0.13 -2.00 5.59 -91.77 -0.51 -2.51 16 27 C -0.15 -1.92 10.04 -26.69 -0.27 -2.19 16 28 C -0.15 -1.82 10.24 -26.69 -0.27 -2.09 16 29 N -0.52 -7.72 9.43 -6.67 -0.06 -7.79 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.17 2.16 7.55 -52.49 -0.40 1.77 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.82 5.22 -51.93 -0.27 0.55 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.05 1.03 6.36 -51.93 -0.33 0.70 16 44 H 0.35 8.80 4.86 -40.82 -0.20 8.60 16 45 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 46 H 0.15 2.59 6.00 -51.93 -0.31 2.28 16 47 H 0.11 1.35 7.66 -51.93 -0.40 0.95 16 48 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -35.77 389.56 -10.79 -46.56 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.84 Total: 8.06 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -4.09 Total: 2.89 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -0.07 Total: -73.08 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.05 Total: -9.42 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -4.71 Total: 19.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.77 -10.79 -46.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690486046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.199 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds