Wall clock time and date at job start Wed Apr 1 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31877 * 118.95204 * 2 1 4 4 C 1.32130 * 120.96625 * 179.97438 * 3 2 1 5 5 C 1.39968 * 118.92516 * 0.02562 * 4 3 2 6 6 C 1.47827 * 120.94111 * 180.02562 * 5 4 3 7 7 O 1.21555 * 120.00359 * 230.22470 * 6 5 4 8 8 N 1.34786 * 119.99834 * 50.22961 * 6 5 4 9 9 C 1.46923 * 120.62697 * 5.63357 * 8 6 5 10 10 C 1.53627 * 108.54075 * 126.36767 * 9 8 6 11 11 C 1.53036 * 109.24166 * 54.85694 * 10 9 8 12 12 C 1.53041 * 109.53724 * 298.50952 * 11 10 9 13 13 C 1.46916 * 120.63107 * 185.90955 * 8 6 5 14 14 H 1.09002 * 109.58708 * 113.79996 * 13 8 6 15 15 C 1.53004 * 109.59019 * 353.37527 * 13 8 6 16 16 N 1.46503 * 109.46905 * 68.67947 * 15 13 8 17 17 C 1.36936 * 120.00067 * 174.84165 * 16 15 13 18 18 H 1.07999 * 119.99732 * 0.02562 * 17 16 15 19 19 C 1.38810 * 120.00109 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99894 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00224 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47300 * 89.99384 * 21 19 17 23 23 H 1.48494 * 109.47382 * 209.99781 * 21 19 17 24 24 H 1.48506 * 109.46781 * 329.99805 * 21 19 17 25 25 C 1.39928 * 118.12075 * 359.97438 * 5 4 3 26 26 C 1.50697 * 120.53979 * 179.97438 * 25 5 4 27 27 C 1.53001 * 117.50105 * 193.44526 * 26 25 5 28 28 C 1.53002 * 117.49653 * 124.78311 * 26 25 5 29 29 N 1.31856 * 118.94860 * 179.73511 * 2 1 3 30 30 H 1.09002 * 109.47569 * 90.00166 * 1 2 3 31 31 H 1.09005 * 109.47292 * 209.99548 * 1 2 3 32 32 H 1.08999 * 109.47652 * 329.99788 * 1 2 3 33 33 H 1.08002 * 120.53937 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.58734 * 246.19908 * 9 8 6 35 35 H 1.08997 * 109.59253 * 6.62744 * 9 8 6 36 36 H 1.08997 * 109.63389 * 294.86054 * 10 9 8 37 37 H 1.09005 * 109.42915 * 174.72454 * 10 9 8 38 38 H 1.09000 * 109.46259 * 178.49043 * 11 10 9 39 39 H 1.09004 * 109.45200 * 58.52380 * 11 10 9 40 40 H 1.09008 * 109.49723 * 301.41199 * 12 11 10 41 41 H 1.08996 * 109.50034 * 181.31981 * 12 11 10 42 42 H 1.09001 * 109.47234 * 188.67714 * 15 13 8 43 43 H 1.09002 * 109.47167 * 308.68535 * 15 13 8 44 44 H 0.97003 * 120.00395 * 354.84623 * 16 15 13 45 45 H 0.97007 * 120.00016 * 180.02562 * 20 19 17 46 46 H 1.09002 * 115.54857 * 339.11990 * 26 25 5 47 47 H 1.09000 * 117.49768 * 359.97438 * 27 26 25 48 48 H 1.08992 * 117.49946 * 145.02125 * 27 26 25 49 49 H 1.09003 * 117.50156 * 214.97935 * 28 26 25 50 50 H 1.09000 * 117.50148 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0016 7 8 6.2722 -0.6733 -0.8073 8 7 6.3370 0.7461 0.8997 9 6 5.6208 1.4674 1.9606 10 6 6.2324 1.0776 3.3149 11 6 7.7394 1.3420 3.2826 12 6 8.3870 0.4803 2.1962 13 6 7.8003 0.8587 0.8326 14 1 8.0771 1.8841 0.5876 15 6 8.3393 -0.0911 -0.2390 16 7 7.9314 0.3848 -1.5632 17 6 8.3875 -0.2479 -2.6886 18 1 9.0476 -1.0981 -2.6001 19 6 8.0005 0.2027 -3.9433 20 7 8.4386 -0.4059 -5.0250 21 14 6.8582 1.6727 -4.0964 22 1 7.6624 2.9189 -4.1705 23 1 6.0400 1.5376 -5.3282 24 1 5.9642 1.7303 -2.9120 25 6 3.4661 -1.2003 0.0005 26 6 4.1856 -2.5244 -0.0001 27 6 3.3631 -3.7753 -0.3156 28 6 3.8430 -3.5150 1.1145 29 7 2.1452 -1.1538 0.0053 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 3.9816 2.1493 0.0009 34 1 5.7234 2.5415 1.8057 35 1 4.5662 1.1925 1.9417 36 1 6.0526 0.0199 3.5072 37 1 5.7752 1.6742 4.1044 38 1 8.1729 1.0919 4.2509 39 1 7.9186 2.3951 3.0656 40 1 8.1870 -0.5719 2.3990 41 1 9.4634 0.6517 2.1893 42 1 9.4275 -0.1218 -0.1833 43 1 7.9386 -1.0911 -0.0731 44 1 7.3382 1.1483 -1.6427 45 1 8.1685 -0.0907 -5.9018 46 1 5.2173 -2.4986 -0.3510 47 1 2.3014 -3.6406 -0.5223 48 1 3.8536 -4.5727 -0.8738 49 1 4.6492 -4.1414 1.4966 50 1 3.0976 -3.2089 1.8484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690486046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:36 Heat of formation + Delta-G solvation = 71.844242 kcal Electronic energy + Delta-G solvation = -32334.814340 eV Core-core repulsion = 28364.113101 eV Total energy + Delta-G solvation = -3970.701239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64477 -41.23470 -38.58269 -38.04804 -36.64850 -34.91375 -34.26837 -33.75697 -33.35342 -31.95376 -29.87856 -27.89518 -26.66815 -25.94549 -24.61214 -24.09890 -23.36977 -23.09653 -22.10097 -21.73999 -20.56854 -19.67514 -18.93364 -18.00504 -17.48711 -16.98569 -16.70496 -16.38847 -16.36847 -15.94636 -15.72774 -15.60002 -15.26749 -15.05505 -14.87487 -14.59072 -14.47243 -14.18917 -13.87328 -13.78605 -13.62789 -13.43726 -13.32008 -13.01778 -12.94059 -12.79949 -12.60704 -12.58458 -12.35898 -12.31326 -12.07155 -11.87731 -11.78478 -11.57439 -11.54865 -11.42183 -11.20841 -10.97787 -10.45885 -10.38480 -9.98707 -9.62802 -8.93112 -7.98024 -5.20212 -0.55354 -0.19336 1.24156 1.30278 1.35609 1.72648 1.92362 2.38542 2.47420 2.68873 2.88569 2.97777 3.12663 3.34048 3.39788 3.63552 3.74022 3.80230 3.89153 3.91271 4.00365 4.03426 4.06514 4.15921 4.26796 4.29595 4.33450 4.51807 4.54850 4.64623 4.65109 4.67290 4.79897 4.83350 4.85372 4.91070 4.95202 5.01469 5.07687 5.08112 5.13715 5.18332 5.23174 5.29432 5.30673 5.49372 5.71604 5.74685 5.79205 6.25133 6.42628 6.87462 7.13976 7.29648 7.93172 8.10648 9.25620 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008120 B = 0.005468 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.243067 B = 5119.888744 C = 6440.855427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.320 3.680 3 N -0.531 5.531 4 C 0.184 3.816 5 C -0.244 4.244 6 C 0.532 3.468 7 O -0.489 6.489 8 N -0.604 5.604 9 C 0.101 3.899 10 C -0.126 4.126 11 C -0.111 4.111 12 C -0.120 4.120 13 C 0.144 3.856 14 H 0.079 0.921 15 C 0.165 3.835 16 N -0.722 5.722 17 C -0.189 4.189 18 H 0.050 0.950 19 C -0.073 4.073 20 N -0.993 5.993 21 Si 0.951 3.049 22 H -0.273 1.273 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.249 3.751 26 C -0.161 4.161 27 C -0.145 4.145 28 C -0.126 4.126 29 N -0.526 5.526 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.187 0.813 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.025 0.975 43 H 0.028 0.972 44 H 0.356 0.644 45 H 0.252 0.748 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.105 0.895 49 H 0.115 0.885 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 3.618 24.017 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 N -0.246 5.246 4 C 0.017 3.983 5 C -0.252 4.252 6 C 0.316 3.684 7 O -0.362 6.362 8 N -0.340 5.340 9 C -0.021 4.021 10 C -0.165 4.165 11 C -0.149 4.149 12 C -0.159 4.159 13 C 0.042 3.958 14 H 0.097 0.903 15 C 0.039 3.961 16 N -0.366 5.366 17 C -0.321 4.321 18 H 0.068 0.932 19 C -0.263 4.263 20 N -0.647 5.647 21 Si 0.781 3.219 22 H -0.199 1.199 23 H -0.231 1.231 24 H -0.197 1.197 25 C 0.103 3.897 26 C -0.180 4.180 27 C -0.182 4.182 28 C -0.164 4.164 29 N -0.241 5.241 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.204 0.796 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.189 0.811 45 H 0.061 0.939 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.133 0.867 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.495 3.103 23.499 27.784 hybrid contribution 0.609 0.620 -1.267 1.536 sum -13.887 3.724 22.232 26.476 Atomic orbital electron populations 1.20755 0.82451 1.05693 1.05048 1.24250 1.00038 0.82818 0.87483 1.68365 1.09285 1.30348 1.16608 1.23691 0.89668 0.97785 0.87129 1.21654 0.96515 0.96674 1.10384 1.18151 0.85990 0.82443 0.81784 1.91217 1.67052 1.40019 1.37874 1.47941 1.06833 1.49190 1.30063 1.22144 0.96006 0.97115 0.86810 1.21955 0.96507 1.02056 0.95937 1.21492 0.94590 1.00170 0.98610 1.21865 1.00922 1.00606 0.92462 1.21533 0.78596 0.99490 0.96226 0.90273 1.20933 0.95301 0.96694 0.83178 1.42555 1.56793 1.35437 1.01773 1.18947 1.19588 1.08419 0.85155 0.93223 1.25270 1.03129 1.02808 0.95058 1.69878 1.52212 1.45237 0.97330 0.85442 0.79444 0.80808 0.76225 1.19903 1.23148 1.19689 1.20945 0.89004 0.93716 0.86015 1.21212 1.00042 0.86977 1.09796 1.23011 1.00508 0.95869 0.98858 1.23009 1.03290 0.98790 0.91285 1.68091 1.08369 1.30728 1.16903 0.88496 0.88112 0.87814 0.79590 0.89308 0.90670 0.92508 0.88280 0.89756 0.90602 0.92227 0.89479 0.95735 0.95386 0.81148 0.93941 0.86980 0.87344 0.87666 0.86680 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.31 71.24 0.73 -0.53 16 2 C 0.32 8.08 7.64 138.71 1.06 9.14 16 3 N -0.53 -14.18 10.31 -186.79 -1.93 -16.10 16 4 C 0.18 5.11 8.94 85.07 0.76 5.87 16 5 C -0.24 -7.90 4.76 -19.91 -0.09 -8.00 16 6 C 0.53 19.04 6.10 86.78 0.53 19.57 16 7 O -0.49 -22.62 8.86 -3.89 -0.03 -22.65 16 8 N -0.60 -16.86 2.97 -797.60 -2.37 -19.22 16 9 C 0.10 1.87 5.45 86.51 0.47 2.34 16 10 C -0.13 -1.79 6.10 30.82 0.19 -1.60 16 11 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 12 C -0.12 -2.47 5.36 30.67 0.16 -2.30 16 13 C 0.14 4.16 2.93 44.98 0.13 4.29 16 14 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.16 6.72 4.87 86.38 0.42 7.14 16 16 N -0.72 -36.57 3.01 -343.44 -1.03 -37.61 16 17 C -0.19 -11.71 10.18 84.03 0.86 -10.86 16 18 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 19 C -0.07 -4.67 5.50 84.86 0.47 -4.21 16 20 N -0.99 -68.43 13.97 21.65 0.30 -68.13 16 21 Si 0.95 50.66 27.74 68.60 1.90 52.56 16 22 H -0.27 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.30 -16.55 7.11 99.48 0.71 -15.84 16 24 H -0.27 -13.63 6.52 99.48 0.65 -12.99 16 25 C 0.25 7.95 6.50 42.92 0.28 8.23 16 26 C -0.16 -5.02 5.59 -11.54 -0.06 -5.08 16 27 C -0.15 -3.69 10.04 30.62 0.31 -3.39 16 28 C -0.13 -2.85 10.24 30.62 0.31 -2.54 16 29 N -0.53 -14.98 9.43 -175.03 -1.65 -16.63 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.19 4.30 7.55 -2.91 -0.02 4.28 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.43 5.22 -2.39 -0.01 1.42 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.02 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.03 1.28 6.36 -2.39 -0.02 1.27 16 44 H 0.36 17.68 4.86 -92.71 -0.45 17.23 16 45 H 0.25 16.61 8.31 -92.70 -0.77 15.84 16 46 H 0.11 4.31 6.00 -2.39 -0.01 4.30 16 47 H 0.11 2.69 7.66 -2.39 -0.02 2.67 16 48 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -83.09 389.56 2.34 -80.75 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.44 Total: 30.32 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.70 Total: 16.72 kcal Atomic # 7 Polarization: -151.01 SS G_CDS: -6.67 Total: -157.69 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.03 Total: -22.65 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.90 Total: 52.56 kcal Total: -83.09 2.34 -80.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690486046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.591 kcal (2) G-P(sol) polarization free energy of solvation -83.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds