Wall clock time and date at job start Wed Apr 1 2020 03:00:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.31888 * 118.95490 * 2 1
4 4 C 1.32125 * 120.96312 * 179.72394 * 3 2 1
5 5 C 1.39971 * 118.92760 * 0.52555 * 4 3 2
6 6 C 1.47830 * 120.93890 * 179.73584 * 5 4 3
7 7 O 1.21553 * 119.99865 * 131.06041 * 6 5 4
8 8 N 1.34780 * 120.00294 * 311.05315 * 6 5 4
9 9 C 1.46924 * 120.63192 * 354.22121 * 8 6 5
10 10 C 1.53188 * 108.77485 * 233.33195 * 9 8 6
11 11 C 1.53043 * 109.31383 * 305.36113 * 10 9 8
12 12 C 1.53045 * 109.53543 * 61.36550 * 11 10 9
13 13 C 1.46931 * 120.62744 * 173.93619 * 8 6 5
14 14 H 1.09004 * 109.58188 * 246.45626 * 13 8 6
15 15 C 1.52998 * 109.59038 * 6.88146 * 13 8 6
16 16 N 1.46497 * 109.47073 * 292.79388 * 15 13 8
17 17 C 1.36935 * 120.00214 * 185.71875 * 16 15 13
18 18 H 1.08001 * 119.99569 * 359.97438 * 17 16 15
19 19 C 1.38813 * 120.00219 * 179.97438 * 17 16 15
20 20 N 1.31613 * 120.00206 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99765 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47126 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47200 * 119.99835 * 21 19 17
24 24 H 1.48497 * 109.47140 * 239.99723 * 21 19 17
25 25 C 1.39926 * 118.11895 * 359.47107 * 5 4 3
26 26 C 1.50695 * 120.53715 * 180.24443 * 25 5 4
27 27 C 1.53000 * 117.50119 * 193.08542 * 26 25 5
28 28 C 1.53003 * 60.00269 * 252.51199 * 27 26 25
29 29 N 1.31861 * 118.95087 * 179.97438 * 2 1 3
30 30 H 1.09004 * 109.47253 * 270.01907 * 1 2 3
31 31 H 1.09005 * 109.47420 * 30.02084 * 1 2 3
32 32 H 1.09004 * 109.47448 * 150.01746 * 1 2 3
33 33 H 1.08004 * 120.53676 * 180.26795 * 4 3 2
34 34 H 1.09004 * 109.58293 * 353.11190 * 9 8 6
35 35 H 1.08999 * 109.58848 * 113.39961 * 9 8 6
36 36 H 1.09000 * 109.50100 * 65.31207 * 10 9 8
37 37 H 1.08996 * 109.49611 * 185.41272 * 10 9 8
38 38 H 1.08991 * 109.46442 * 181.38554 * 11 10 9
39 39 H 1.09002 * 109.45957 * 301.36178 * 11 10 9
40 40 H 1.08998 * 109.49590 * 58.58675 * 12 11 10
41 41 H 1.09004 * 109.49584 * 178.65389 * 12 11 10
42 42 H 1.08998 * 109.46978 * 52.79004 * 15 13 8
43 43 H 1.08993 * 109.47109 * 172.79229 * 15 13 8
44 44 H 0.97002 * 120.00201 * 5.71279 * 16 15 13
45 45 H 0.96996 * 120.00023 * 180.02562 * 20 19 17
46 46 H 1.09001 * 115.55471 * 338.79742 * 26 25 5
47 47 H 1.09008 * 117.49878 * 0.02562 * 27 26 25
48 48 H 1.08996 * 117.50432 * 145.02261 * 27 26 25
49 49 H 1.08999 * 117.49588 * 252.50948 * 28 27 26
50 50 H 1.08997 * 117.49752 * 107.48255 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1454 1.1540 0.0000
4 6 3.4659 1.2003 0.0055
5 6 4.1855 -0.0002 0.0001
6 6 5.6638 -0.0003 0.0000
7 8 6.2715 -0.6953 0.7906
8 7 6.3377 0.7702 -0.8768
9 6 5.6227 1.5177 -1.9202
10 6 6.2371 1.1750 -3.2810
11 6 7.7436 1.4410 -3.2377
12 6 8.3907 0.5478 -2.1768
13 6 7.8008 0.8834 -0.8034
14 1 8.0750 1.9014 -0.5268
15 6 8.3395 -0.0975 0.2398
16 7 7.8986 0.3175 1.5738
17 6 8.3562 -0.3432 2.6826
18 1 9.0418 -1.1705 2.5735
19 6 7.9389 0.0505 3.9466
20 7 7.1038 1.0590 4.0796
21 14 8.5637 -0.8505 5.4591
22 1 9.4851 -1.9378 5.0421
23 1 9.2874 0.1021 6.3389
24 1 7.4148 -1.4322 6.1985
25 6 3.4660 -1.2004 0.0004
26 6 4.1855 -2.5244 0.0003
27 6 3.3612 -3.7764 -0.3065
28 6 3.8484 -3.5118 1.1196
29 7 2.1452 -1.1538 0.0005
30 1 -0.3634 0.0003 1.0277
31 1 -0.3634 0.8898 -0.5142
32 1 -0.3634 -0.8902 -0.5136
33 1 3.9817 2.1492 0.0098
34 1 4.5694 1.2373 -1.9138
35 1 5.7173 2.5874 -1.7332
36 1 6.0597 0.1232 -3.5058
37 1 5.7803 1.7945 -4.0528
38 1 8.1793 1.2213 -4.2123
39 1 7.9205 2.4873 -2.9883
40 1 8.1930 -0.4980 -2.4119
41 1 9.4669 0.7205 -2.1630
42 1 7.9619 -1.0977 0.0273
43 1 9.4288 -0.1050 0.2031
44 1 7.2827 1.0604 1.6718
45 1 6.8125 1.3343 4.9629
46 1 5.2154 -2.4999 -0.3557
47 1 2.2985 -3.6423 -0.5087
48 1 3.8487 -4.5757 -0.8647
49 1 4.6564 -4.1369 1.4995
50 1 3.1062 -3.2035 1.8558
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001690486047.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:42
Heat of formation + Delta-G solvation = 92.973745 kcal
Electronic energy + Delta-G solvation = -32227.566674 eV
Core-core repulsion = 28257.781679 eV
Total energy + Delta-G solvation = -3969.784995 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.31088 -39.81951 -37.32370 -36.75128 -34.72777 -33.49592 -32.91166 -32.31748
-31.84710 -29.84977 -28.75869 -26.17573 -25.37253 -24.49434 -23.40013 -22.74648
-22.19868 -21.60883 -20.81482 -20.57965 -19.13711 -17.73072 -17.17154 -16.49204
-16.23787 -15.62584 -15.32506 -15.00104 -14.78303 -14.49867 -14.36892 -14.12065
-13.86123 -13.59833 -13.48344 -13.29588 -13.02699 -12.86214 -12.60131 -12.50818
-12.24294 -12.19981 -11.83995 -11.70717 -11.43597 -11.32296 -11.14322 -11.05848
-10.95823 -10.77231 -10.74465 -10.60646 -10.35335 -10.32512 -10.00173 -9.87747
-9.55634 -9.17496 -9.03833 -8.75940 -8.39216 -8.11350 -6.53329 -5.60556
-2.78441 0.76390 1.12383 3.25456 3.29111 3.52297 3.57035 3.59211
3.69048 3.90225 4.09044 4.13372 4.46104 4.68118 4.71670 4.78360
4.88346 4.96452 5.02977 5.14111 5.16785 5.18722 5.24086 5.30972
5.37564 5.43719 5.46395 5.46814 5.59599 5.75397 5.76072 5.77292
5.80360 5.81777 5.93318 5.96301 5.98915 6.03330 6.06110 6.11244
6.25757 6.30450 6.32470 6.45250 6.48973 6.62256 6.89180 7.04070
7.22242 7.83677 7.87952 8.14982 8.57183 8.85039 9.68840 10.27407
10.61181 11.63114
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.007927 B = 0.005245 C = 0.003916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3531.329101 B = 5336.802765 C = 7147.908363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.320 3.680
3 N -0.527 5.527
4 C 0.179 3.821
5 C -0.209 4.209
6 C 0.514 3.486
7 O -0.417 6.417
8 N -0.611 5.611
9 C 0.109 3.891
10 C -0.132 4.132
11 C -0.117 4.117
12 C -0.127 4.127
13 C 0.144 3.856
14 H 0.070 0.930
15 C 0.160 3.840
16 N -0.690 5.690
17 C -0.208 4.208
18 H 0.067 0.933
19 C -0.019 4.019
20 N -0.935 5.935
21 Si 0.901 3.099
22 H -0.282 1.282
23 H -0.295 1.295
24 H -0.295 1.295
25 C 0.251 3.749
26 C -0.115 4.115
27 C -0.161 4.161
28 C -0.141 4.141
29 N -0.521 5.521
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.083 0.917
33 H 0.170 0.830
34 H 0.074 0.926
35 H 0.065 0.935
36 H 0.064 0.936
37 H 0.069 0.931
38 H 0.061 0.939
39 H 0.063 0.937
40 H 0.066 0.934
41 H 0.073 0.927
42 H 0.039 0.961
43 H 0.018 0.982
44 H 0.380 0.620
45 H 0.250 0.750
46 H 0.128 0.872
47 H 0.104 0.896
48 H 0.095 0.905
49 H 0.103 0.897
50 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.563 -1.273 -17.453 19.482
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.053 3.947
3 N -0.241 5.241
4 C 0.013 3.987
5 C -0.217 4.217
6 C 0.297 3.703
7 O -0.283 6.283
8 N -0.350 5.350
9 C -0.015 4.015
10 C -0.171 4.171
11 C -0.155 4.155
12 C -0.166 4.166
13 C 0.041 3.959
14 H 0.088 0.912
15 C 0.033 3.967
16 N -0.333 5.333
17 C -0.340 4.340
18 H 0.085 0.915
19 C -0.214 4.214
20 N -0.585 5.585
21 Si 0.733 3.267
22 H -0.207 1.207
23 H -0.222 1.222
24 H -0.222 1.222
25 C 0.105 3.895
26 C -0.134 4.134
27 C -0.199 4.199
28 C -0.179 4.179
29 N -0.236 5.236
30 H 0.104 0.896
31 H 0.103 0.897
32 H 0.102 0.898
33 H 0.187 0.813
34 H 0.092 0.908
35 H 0.083 0.917
36 H 0.083 0.917
37 H 0.088 0.912
38 H 0.080 0.920
39 H 0.082 0.918
40 H 0.085 0.915
41 H 0.092 0.908
42 H 0.056 0.944
43 H 0.036 0.964
44 H 0.213 0.787
45 H 0.060 0.940
46 H 0.146 0.854
47 H 0.123 0.877
48 H 0.114 0.886
49 H 0.121 0.879
50 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -9.118 -1.817 -16.857 19.251
hybrid contribution 0.973 0.137 1.032 1.424
sum -8.146 -1.680 -15.825 17.878
Atomic orbital electron populations
1.20545 0.85805 1.03896 1.03856 1.23266 0.98078 0.83399 0.89962
1.68219 1.09821 1.30041 1.16048 1.23439 0.89227 0.97903 0.88123
1.21704 0.97432 0.95456 1.07127 1.17722 0.85176 0.84881 0.82491
1.91256 1.65733 1.36244 1.35095 1.47685 1.06627 1.48609 1.32056
1.21694 0.96192 0.96210 0.87394 1.21895 0.96393 1.02035 0.96757
1.21493 0.94995 1.00091 0.98872 1.21910 1.00032 1.00222 0.94427
1.21506 0.78433 1.00619 0.95325 0.91201 1.20899 0.94871 0.95878
0.85082 1.42347 1.53558 1.37744 0.99604 1.19196 1.19680 1.10093
0.85055 0.91547 1.24613 1.00494 0.99116 0.97188 1.69655 1.37585
1.29605 1.21672 0.86179 0.77752 0.78839 0.83900 1.20747 1.22248
1.22249 1.20749 0.88348 0.93513 0.86908 1.20940 0.99291 0.85912
1.07265 1.22990 1.00647 0.97204 0.99040 1.22869 1.03117 1.00360
0.91538 1.67939 1.09153 1.30198 1.16330 0.89649 0.89681 0.89783
0.81261 0.90776 0.91659 0.91696 0.91222 0.91999 0.91801 0.91546
0.90827 0.94359 0.96392 0.78655 0.94030 0.85439 0.87718 0.88612
0.87887 0.88684
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.84 10.31 36.00 0.37 -0.46 16
2 C 0.32 4.67 7.64 -157.06 -1.20 3.47 16
3 N -0.53 -8.12 10.32 -10.39 -0.11 -8.23 16
4 C 0.18 2.83 8.90 -16.78 -0.15 2.68 16
5 C -0.21 -3.63 4.81 -104.69 -0.50 -4.13 16
6 C 0.51 9.65 5.81 -12.33 -0.07 9.58 16
7 O -0.42 -9.63 9.30 5.32 0.05 -9.58 16
8 N -0.61 -9.51 2.97 -166.33 -0.49 -10.00 16
9 C 0.11 1.29 5.34 -3.71 -0.02 1.27 16
10 C -0.13 -1.30 6.08 -26.61 -0.16 -1.47 16
11 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16
12 C -0.13 -1.55 5.37 -26.61 -0.14 -1.69 16
13 C 0.14 2.31 2.95 -67.60 -0.20 2.11 16
14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
15 C 0.16 3.30 4.87 -4.04 -0.02 3.28 16
16 N -0.69 -17.85 3.15 -59.91 -0.19 -18.04 16
17 C -0.21 -6.03 9.68 -15.06 -0.15 -6.18 16
18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
19 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16
20 N -0.93 -29.39 13.06 55.49 0.72 -28.67 16
21 Si 0.90 23.56 29.55 -169.99 -5.02 18.53 16
22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
23 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16
24 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16
25 C 0.25 4.24 6.50 -81.82 -0.53 3.70 16
26 C -0.12 -1.82 5.19 -91.77 -0.48 -2.30 16
27 C -0.16 -2.05 10.04 -26.73 -0.27 -2.32 16
28 C -0.14 -2.10 10.23 -26.73 -0.27 -2.38 16
29 N -0.52 -8.20 9.43 -6.68 -0.06 -8.26 16
30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.17 2.38 7.45 -52.48 -0.39 1.99 16
34 H 0.07 0.88 5.19 -51.93 -0.27 0.61 16
35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.04 0.85 6.50 -51.93 -0.34 0.51 16
43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
44 H 0.38 10.51 6.82 -40.82 -0.28 10.23 16
45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16
46 H 0.13 2.15 6.81 -51.93 -0.35 1.80 16
47 H 0.10 1.31 7.65 -51.92 -0.40 0.91 16
48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16
49 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16
50 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16
LS Contribution 392.91 15.07 5.92 5.92
Total: -1.00 -34.36 392.91 -11.14 -45.51
By element:
Atomic # 1 Polarization: 17.56 SS G_CDS: -7.92 Total: 9.64 kcal
Atomic # 6 Polarization: 7.22 SS G_CDS: -4.05 Total: 3.18 kcal
Atomic # 7 Polarization: -73.08 SS G_CDS: -0.13 Total: -73.21 kcal
Atomic # 8 Polarization: -9.63 SS G_CDS: 0.05 Total: -9.58 kcal
Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.53 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -34.36 -11.14 -45.51 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690486047.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.480 kcal
(2) G-P(sol) polarization free energy of solvation -34.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds