Wall clock time and date at job start Wed Apr 1 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31888 * 118.95490 * 2 1 4 4 C 1.32125 * 120.96312 * 179.72394 * 3 2 1 5 5 C 1.39971 * 118.92760 * 0.52555 * 4 3 2 6 6 C 1.47830 * 120.93890 * 179.73584 * 5 4 3 7 7 O 1.21553 * 119.99865 * 131.06041 * 6 5 4 8 8 N 1.34780 * 120.00294 * 311.05315 * 6 5 4 9 9 C 1.46924 * 120.63192 * 354.22121 * 8 6 5 10 10 C 1.53188 * 108.77485 * 233.33195 * 9 8 6 11 11 C 1.53043 * 109.31383 * 305.36113 * 10 9 8 12 12 C 1.53045 * 109.53543 * 61.36550 * 11 10 9 13 13 C 1.46931 * 120.62744 * 173.93619 * 8 6 5 14 14 H 1.09004 * 109.58188 * 246.45626 * 13 8 6 15 15 C 1.52998 * 109.59038 * 6.88146 * 13 8 6 16 16 N 1.46497 * 109.47073 * 292.79388 * 15 13 8 17 17 C 1.36935 * 120.00214 * 185.71875 * 16 15 13 18 18 H 1.08001 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00206 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47126 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47200 * 119.99835 * 21 19 17 24 24 H 1.48497 * 109.47140 * 239.99723 * 21 19 17 25 25 C 1.39926 * 118.11895 * 359.47107 * 5 4 3 26 26 C 1.50695 * 120.53715 * 180.24443 * 25 5 4 27 27 C 1.53000 * 117.50119 * 193.08542 * 26 25 5 28 28 C 1.53003 * 60.00269 * 252.51199 * 27 26 25 29 29 N 1.31861 * 118.95087 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47253 * 270.01907 * 1 2 3 31 31 H 1.09005 * 109.47420 * 30.02084 * 1 2 3 32 32 H 1.09004 * 109.47448 * 150.01746 * 1 2 3 33 33 H 1.08004 * 120.53676 * 180.26795 * 4 3 2 34 34 H 1.09004 * 109.58293 * 353.11190 * 9 8 6 35 35 H 1.08999 * 109.58848 * 113.39961 * 9 8 6 36 36 H 1.09000 * 109.50100 * 65.31207 * 10 9 8 37 37 H 1.08996 * 109.49611 * 185.41272 * 10 9 8 38 38 H 1.08991 * 109.46442 * 181.38554 * 11 10 9 39 39 H 1.09002 * 109.45957 * 301.36178 * 11 10 9 40 40 H 1.08998 * 109.49590 * 58.58675 * 12 11 10 41 41 H 1.09004 * 109.49584 * 178.65389 * 12 11 10 42 42 H 1.08998 * 109.46978 * 52.79004 * 15 13 8 43 43 H 1.08993 * 109.47109 * 172.79229 * 15 13 8 44 44 H 0.97002 * 120.00201 * 5.71279 * 16 15 13 45 45 H 0.96996 * 120.00023 * 180.02562 * 20 19 17 46 46 H 1.09001 * 115.55471 * 338.79742 * 26 25 5 47 47 H 1.09008 * 117.49878 * 0.02562 * 27 26 25 48 48 H 1.08996 * 117.50432 * 145.02261 * 27 26 25 49 49 H 1.08999 * 117.49588 * 252.50948 * 28 27 26 50 50 H 1.08997 * 117.49752 * 107.48255 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2003 0.0055 5 6 4.1855 -0.0002 0.0001 6 6 5.6638 -0.0003 0.0000 7 8 6.2715 -0.6953 0.7906 8 7 6.3377 0.7702 -0.8768 9 6 5.6227 1.5177 -1.9202 10 6 6.2371 1.1750 -3.2810 11 6 7.7436 1.4410 -3.2377 12 6 8.3907 0.5478 -2.1768 13 6 7.8008 0.8834 -0.8034 14 1 8.0750 1.9014 -0.5268 15 6 8.3395 -0.0975 0.2398 16 7 7.8986 0.3175 1.5738 17 6 8.3562 -0.3432 2.6826 18 1 9.0418 -1.1705 2.5735 19 6 7.9389 0.0505 3.9466 20 7 7.1038 1.0590 4.0796 21 14 8.5637 -0.8505 5.4591 22 1 9.4851 -1.9378 5.0421 23 1 9.2874 0.1021 6.3389 24 1 7.4148 -1.4322 6.1985 25 6 3.4660 -1.2004 0.0004 26 6 4.1855 -2.5244 0.0003 27 6 3.3612 -3.7764 -0.3065 28 6 3.8484 -3.5118 1.1196 29 7 2.1452 -1.1538 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5136 33 1 3.9817 2.1492 0.0098 34 1 4.5694 1.2373 -1.9138 35 1 5.7173 2.5874 -1.7332 36 1 6.0597 0.1232 -3.5058 37 1 5.7803 1.7945 -4.0528 38 1 8.1793 1.2213 -4.2123 39 1 7.9205 2.4873 -2.9883 40 1 8.1930 -0.4980 -2.4119 41 1 9.4669 0.7205 -2.1630 42 1 7.9619 -1.0977 0.0273 43 1 9.4288 -0.1050 0.2031 44 1 7.2827 1.0604 1.6718 45 1 6.8125 1.3343 4.9629 46 1 5.2154 -2.4999 -0.3557 47 1 2.2985 -3.6423 -0.5087 48 1 3.8487 -4.5757 -0.8647 49 1 4.6564 -4.1369 1.4995 50 1 3.1062 -3.2035 1.8558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690486047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:42 Heat of formation + Delta-G solvation = 92.973745 kcal Electronic energy + Delta-G solvation = -32227.566674 eV Core-core repulsion = 28257.781679 eV Total energy + Delta-G solvation = -3969.784995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.31088 -39.81951 -37.32370 -36.75128 -34.72777 -33.49592 -32.91166 -32.31748 -31.84710 -29.84977 -28.75869 -26.17573 -25.37253 -24.49434 -23.40013 -22.74648 -22.19868 -21.60883 -20.81482 -20.57965 -19.13711 -17.73072 -17.17154 -16.49204 -16.23787 -15.62584 -15.32506 -15.00104 -14.78303 -14.49867 -14.36892 -14.12065 -13.86123 -13.59833 -13.48344 -13.29588 -13.02699 -12.86214 -12.60131 -12.50818 -12.24294 -12.19981 -11.83995 -11.70717 -11.43597 -11.32296 -11.14322 -11.05848 -10.95823 -10.77231 -10.74465 -10.60646 -10.35335 -10.32512 -10.00173 -9.87747 -9.55634 -9.17496 -9.03833 -8.75940 -8.39216 -8.11350 -6.53329 -5.60556 -2.78441 0.76390 1.12383 3.25456 3.29111 3.52297 3.57035 3.59211 3.69048 3.90225 4.09044 4.13372 4.46104 4.68118 4.71670 4.78360 4.88346 4.96452 5.02977 5.14111 5.16785 5.18722 5.24086 5.30972 5.37564 5.43719 5.46395 5.46814 5.59599 5.75397 5.76072 5.77292 5.80360 5.81777 5.93318 5.96301 5.98915 6.03330 6.06110 6.11244 6.25757 6.30450 6.32470 6.45250 6.48973 6.62256 6.89180 7.04070 7.22242 7.83677 7.87952 8.14982 8.57183 8.85039 9.68840 10.27407 10.61181 11.63114 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007927 B = 0.005245 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.329101 B = 5336.802765 C = 7147.908363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.320 3.680 3 N -0.527 5.527 4 C 0.179 3.821 5 C -0.209 4.209 6 C 0.514 3.486 7 O -0.417 6.417 8 N -0.611 5.611 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.117 4.117 12 C -0.127 4.127 13 C 0.144 3.856 14 H 0.070 0.930 15 C 0.160 3.840 16 N -0.690 5.690 17 C -0.208 4.208 18 H 0.067 0.933 19 C -0.019 4.019 20 N -0.935 5.935 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.251 3.749 26 C -0.115 4.115 27 C -0.161 4.161 28 C -0.141 4.141 29 N -0.521 5.521 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.170 0.830 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.018 0.982 44 H 0.380 0.620 45 H 0.250 0.750 46 H 0.128 0.872 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -1.273 -17.453 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 N -0.241 5.241 4 C 0.013 3.987 5 C -0.217 4.217 6 C 0.297 3.703 7 O -0.283 6.283 8 N -0.350 5.350 9 C -0.015 4.015 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.166 4.166 13 C 0.041 3.959 14 H 0.088 0.912 15 C 0.033 3.967 16 N -0.333 5.333 17 C -0.340 4.340 18 H 0.085 0.915 19 C -0.214 4.214 20 N -0.585 5.585 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.222 1.222 25 C 0.105 3.895 26 C -0.134 4.134 27 C -0.199 4.199 28 C -0.179 4.179 29 N -0.236 5.236 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.213 0.787 45 H 0.060 0.940 46 H 0.146 0.854 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.121 0.879 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.118 -1.817 -16.857 19.251 hybrid contribution 0.973 0.137 1.032 1.424 sum -8.146 -1.680 -15.825 17.878 Atomic orbital electron populations 1.20545 0.85805 1.03896 1.03856 1.23266 0.98078 0.83399 0.89962 1.68219 1.09821 1.30041 1.16048 1.23439 0.89227 0.97903 0.88123 1.21704 0.97432 0.95456 1.07127 1.17722 0.85176 0.84881 0.82491 1.91256 1.65733 1.36244 1.35095 1.47685 1.06627 1.48609 1.32056 1.21694 0.96192 0.96210 0.87394 1.21895 0.96393 1.02035 0.96757 1.21493 0.94995 1.00091 0.98872 1.21910 1.00032 1.00222 0.94427 1.21506 0.78433 1.00619 0.95325 0.91201 1.20899 0.94871 0.95878 0.85082 1.42347 1.53558 1.37744 0.99604 1.19196 1.19680 1.10093 0.85055 0.91547 1.24613 1.00494 0.99116 0.97188 1.69655 1.37585 1.29605 1.21672 0.86179 0.77752 0.78839 0.83900 1.20747 1.22248 1.22249 1.20749 0.88348 0.93513 0.86908 1.20940 0.99291 0.85912 1.07265 1.22990 1.00647 0.97204 0.99040 1.22869 1.03117 1.00360 0.91538 1.67939 1.09153 1.30198 1.16330 0.89649 0.89681 0.89783 0.81261 0.90776 0.91659 0.91696 0.91222 0.91999 0.91801 0.91546 0.90827 0.94359 0.96392 0.78655 0.94030 0.85439 0.87718 0.88612 0.87887 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.31 36.00 0.37 -0.46 16 2 C 0.32 4.67 7.64 -157.06 -1.20 3.47 16 3 N -0.53 -8.12 10.32 -10.39 -0.11 -8.23 16 4 C 0.18 2.83 8.90 -16.78 -0.15 2.68 16 5 C -0.21 -3.63 4.81 -104.69 -0.50 -4.13 16 6 C 0.51 9.65 5.81 -12.33 -0.07 9.58 16 7 O -0.42 -9.63 9.30 5.32 0.05 -9.58 16 8 N -0.61 -9.51 2.97 -166.33 -0.49 -10.00 16 9 C 0.11 1.29 5.34 -3.71 -0.02 1.27 16 10 C -0.13 -1.30 6.08 -26.61 -0.16 -1.47 16 11 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 12 C -0.13 -1.55 5.37 -26.61 -0.14 -1.69 16 13 C 0.14 2.31 2.95 -67.60 -0.20 2.11 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.16 3.30 4.87 -4.04 -0.02 3.28 16 16 N -0.69 -17.85 3.15 -59.91 -0.19 -18.04 16 17 C -0.21 -6.03 9.68 -15.06 -0.15 -6.18 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16 20 N -0.93 -29.39 13.06 55.49 0.72 -28.67 16 21 Si 0.90 23.56 29.55 -169.99 -5.02 18.53 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 24 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 25 C 0.25 4.24 6.50 -81.82 -0.53 3.70 16 26 C -0.12 -1.82 5.19 -91.77 -0.48 -2.30 16 27 C -0.16 -2.05 10.04 -26.73 -0.27 -2.32 16 28 C -0.14 -2.10 10.23 -26.73 -0.27 -2.38 16 29 N -0.52 -8.20 9.43 -6.68 -0.06 -8.26 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.17 2.38 7.45 -52.48 -0.39 1.99 16 34 H 0.07 0.88 5.19 -51.93 -0.27 0.61 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.85 6.50 -51.93 -0.34 0.51 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.51 6.82 -40.82 -0.28 10.23 16 45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.13 2.15 6.81 -51.93 -0.35 1.80 16 47 H 0.10 1.31 7.65 -51.92 -0.40 0.91 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -34.36 392.91 -11.14 -45.51 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.92 Total: 9.64 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -4.05 Total: 3.18 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -0.13 Total: -73.21 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.05 Total: -9.58 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.36 -11.14 -45.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690486047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.480 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds