Wall clock time and date at job start Wed Apr 1 2020 03:00:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.31888 * 118.95490 * 2 1
4 4 C 1.32125 * 120.96312 * 179.72394 * 3 2 1
5 5 C 1.39971 * 118.92760 * 0.52555 * 4 3 2
6 6 C 1.47830 * 120.93890 * 179.73584 * 5 4 3
7 7 O 1.21553 * 119.99865 * 131.06041 * 6 5 4
8 8 N 1.34780 * 120.00294 * 311.05315 * 6 5 4
9 9 C 1.46924 * 120.63192 * 354.22121 * 8 6 5
10 10 C 1.53188 * 108.77485 * 233.33195 * 9 8 6
11 11 C 1.53043 * 109.31383 * 305.36113 * 10 9 8
12 12 C 1.53045 * 109.53543 * 61.36550 * 11 10 9
13 13 C 1.46931 * 120.62744 * 173.93619 * 8 6 5
14 14 H 1.09004 * 109.58188 * 246.45626 * 13 8 6
15 15 C 1.52998 * 109.59038 * 6.88146 * 13 8 6
16 16 N 1.46497 * 109.47073 * 292.79388 * 15 13 8
17 17 C 1.36935 * 120.00214 * 185.71875 * 16 15 13
18 18 H 1.08001 * 119.99569 * 359.97438 * 17 16 15
19 19 C 1.38813 * 120.00219 * 179.97438 * 17 16 15
20 20 N 1.31613 * 120.00206 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99765 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47126 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47200 * 119.99835 * 21 19 17
24 24 H 1.48497 * 109.47140 * 239.99723 * 21 19 17
25 25 C 1.39926 * 118.11895 * 359.47107 * 5 4 3
26 26 C 1.50695 * 120.53715 * 180.24443 * 25 5 4
27 27 C 1.53000 * 117.50119 * 193.08542 * 26 25 5
28 28 C 1.53003 * 60.00269 * 252.51199 * 27 26 25
29 29 N 1.31861 * 118.95087 * 179.97438 * 2 1 3
30 30 H 1.09004 * 109.47253 * 270.01907 * 1 2 3
31 31 H 1.09005 * 109.47420 * 30.02084 * 1 2 3
32 32 H 1.09004 * 109.47448 * 150.01746 * 1 2 3
33 33 H 1.08004 * 120.53676 * 180.26795 * 4 3 2
34 34 H 1.09004 * 109.58293 * 353.11190 * 9 8 6
35 35 H 1.08999 * 109.58848 * 113.39961 * 9 8 6
36 36 H 1.09000 * 109.50100 * 65.31207 * 10 9 8
37 37 H 1.08996 * 109.49611 * 185.41272 * 10 9 8
38 38 H 1.08991 * 109.46442 * 181.38554 * 11 10 9
39 39 H 1.09002 * 109.45957 * 301.36178 * 11 10 9
40 40 H 1.08998 * 109.49590 * 58.58675 * 12 11 10
41 41 H 1.09004 * 109.49584 * 178.65389 * 12 11 10
42 42 H 1.08998 * 109.46978 * 52.79004 * 15 13 8
43 43 H 1.08993 * 109.47109 * 172.79229 * 15 13 8
44 44 H 0.97002 * 120.00201 * 5.71279 * 16 15 13
45 45 H 0.96996 * 120.00023 * 180.02562 * 20 19 17
46 46 H 1.09001 * 115.55471 * 338.79742 * 26 25 5
47 47 H 1.09008 * 117.49878 * 0.02562 * 27 26 25
48 48 H 1.08996 * 117.50432 * 145.02261 * 27 26 25
49 49 H 1.08999 * 117.49588 * 252.50948 * 28 27 26
50 50 H 1.08997 * 117.49752 * 107.48255 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1454 1.1540 0.0000
4 6 3.4659 1.2003 0.0055
5 6 4.1855 -0.0002 0.0001
6 6 5.6638 -0.0003 0.0000
7 8 6.2715 -0.6953 0.7906
8 7 6.3377 0.7702 -0.8768
9 6 5.6227 1.5177 -1.9202
10 6 6.2371 1.1750 -3.2810
11 6 7.7436 1.4410 -3.2377
12 6 8.3907 0.5478 -2.1768
13 6 7.8008 0.8834 -0.8034
14 1 8.0750 1.9014 -0.5268
15 6 8.3395 -0.0975 0.2398
16 7 7.8986 0.3175 1.5738
17 6 8.3562 -0.3432 2.6826
18 1 9.0418 -1.1705 2.5735
19 6 7.9389 0.0505 3.9466
20 7 7.1038 1.0590 4.0796
21 14 8.5637 -0.8505 5.4591
22 1 9.4851 -1.9378 5.0421
23 1 9.2874 0.1021 6.3389
24 1 7.4148 -1.4322 6.1985
25 6 3.4660 -1.2004 0.0004
26 6 4.1855 -2.5244 0.0003
27 6 3.3612 -3.7764 -0.3065
28 6 3.8484 -3.5118 1.1196
29 7 2.1452 -1.1538 0.0005
30 1 -0.3634 0.0003 1.0277
31 1 -0.3634 0.8898 -0.5142
32 1 -0.3634 -0.8902 -0.5136
33 1 3.9817 2.1492 0.0098
34 1 4.5694 1.2373 -1.9138
35 1 5.7173 2.5874 -1.7332
36 1 6.0597 0.1232 -3.5058
37 1 5.7803 1.7945 -4.0528
38 1 8.1793 1.2213 -4.2123
39 1 7.9205 2.4873 -2.9883
40 1 8.1930 -0.4980 -2.4119
41 1 9.4669 0.7205 -2.1630
42 1 7.9619 -1.0977 0.0273
43 1 9.4288 -0.1050 0.2031
44 1 7.2827 1.0604 1.6718
45 1 6.8125 1.3343 4.9629
46 1 5.2154 -2.4999 -0.3557
47 1 2.2985 -3.6423 -0.5087
48 1 3.8487 -4.5757 -0.8647
49 1 4.6564 -4.1369 1.4995
50 1 3.1062 -3.2035 1.8558
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001690486047.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:40
Heat of formation + Delta-G solvation = 72.003592 kcal
Electronic energy + Delta-G solvation = -32228.476008 eV
Core-core repulsion = 28257.781679 eV
Total energy + Delta-G solvation = -3970.694329 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.56492 -41.13336 -38.52547 -37.98579 -36.47380 -34.84667 -34.20716 -33.63403
-33.24996 -31.53369 -29.81827 -27.67681 -26.62359 -25.95480 -24.60825 -24.30208
-23.35798 -23.01218 -22.05738 -21.67145 -20.42926 -19.25511 -18.81134 -17.91679
-17.43075 -16.93133 -16.66306 -16.51273 -16.13279 -15.80346 -15.60410 -15.44040
-15.18161 -15.03788 -14.98465 -14.50263 -14.42050 -14.12711 -13.68974 -13.59334
-13.57530 -13.29369 -13.14348 -13.01620 -12.86593 -12.75561 -12.55686 -12.54661
-12.33038 -12.13799 -12.08180 -11.87573 -11.73484 -11.54359 -11.50834 -11.36789
-11.17062 -10.90165 -10.40085 -10.31146 -9.90131 -9.50527 -8.59631 -7.85889
-5.03005 -0.47714 -0.13671 1.41312 1.43189 1.52347 1.88592 2.01781
2.45631 2.59859 2.76685 2.91877 2.95089 3.26291 3.47398 3.51487
3.77293 3.81933 3.84429 3.93862 3.98256 4.04346 4.05271 4.12171
4.16949 4.32959 4.36975 4.49183 4.54107 4.58119 4.68392 4.69328
4.70103 4.81060 4.87265 4.88495 4.93957 4.98643 5.04241 5.04885
5.09594 5.14330 5.21178 5.23911 5.32163 5.34966 5.50069 5.53444
5.77970 5.82259 6.35146 6.54280 6.92784 7.40634 7.45239 8.21687
8.43696 9.38925
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.007927 B = 0.005245 C = 0.003916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3531.329101 B = 5336.802765 C = 7147.908363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 C 0.316 3.684
3 N -0.533 5.533
4 C 0.185 3.815
5 C -0.236 4.236
6 C 0.524 3.476
7 O -0.475 6.475
8 N -0.605 5.605
9 C 0.103 3.897
10 C -0.126 4.126
11 C -0.111 4.111
12 C -0.119 4.119
13 C 0.148 3.852
14 H 0.067 0.933
15 C 0.163 3.837
16 N -0.700 5.700
17 C -0.204 4.204
18 H 0.064 0.936
19 C -0.083 4.083
20 N -0.973 5.973
21 Si 0.961 3.039
22 H -0.269 1.269
23 H -0.293 1.293
24 H -0.303 1.303
25 C 0.244 3.756
26 C -0.137 4.137
27 C -0.123 4.123
28 C -0.153 4.153
29 N -0.526 5.526
30 H 0.096 0.904
31 H 0.102 0.898
32 H 0.101 0.899
33 H 0.183 0.817
34 H 0.074 0.926
35 H 0.082 0.918
36 H 0.057 0.943
37 H 0.099 0.901
38 H 0.085 0.915
39 H 0.072 0.928
40 H 0.060 0.940
41 H 0.085 0.915
42 H 0.022 0.978
43 H 0.019 0.981
44 H 0.367 0.633
45 H 0.242 0.758
46 H 0.110 0.890
47 H 0.112 0.888
48 H 0.121 0.879
49 H 0.102 0.898
50 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.638 -1.122 -20.092 22.312
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.050 3.950
3 N -0.247 5.247
4 C 0.018 3.982
5 C -0.244 4.244
6 C 0.308 3.692
7 O -0.346 6.346
8 N -0.342 5.342
9 C -0.019 4.019
10 C -0.164 4.164
11 C -0.149 4.149
12 C -0.158 4.158
13 C 0.045 3.955
14 H 0.085 0.915
15 C 0.037 3.963
16 N -0.341 5.341
17 C -0.337 4.337
18 H 0.082 0.918
19 C -0.274 4.274
20 N -0.626 5.626
21 Si 0.792 3.208
22 H -0.194 1.194
23 H -0.220 1.220
24 H -0.231 1.231
25 C 0.098 3.902
26 C -0.156 4.156
27 C -0.160 4.160
28 C -0.191 4.191
29 N -0.241 5.241
30 H 0.114 0.886
31 H 0.121 0.879
32 H 0.119 0.881
33 H 0.200 0.800
34 H 0.092 0.908
35 H 0.100 0.900
36 H 0.076 0.924
37 H 0.117 0.883
38 H 0.104 0.896
39 H 0.091 0.909
40 H 0.079 0.921
41 H 0.104 0.896
42 H 0.040 0.960
43 H 0.037 0.963
44 H 0.199 0.801
45 H 0.051 0.949
46 H 0.128 0.872
47 H 0.130 0.870
48 H 0.139 0.861
49 H 0.121 0.879
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -10.185 -1.664 -19.585 22.138
hybrid contribution 1.183 0.068 1.690 2.065
sum -9.002 -1.595 -17.895 20.095
Atomic orbital electron populations
1.20739 0.82463 1.05659 1.04967 1.24237 1.00026 0.82842 0.87850
1.68348 1.09351 1.30419 1.16611 1.23637 0.89613 0.97839 0.87092
1.21681 0.96691 0.96490 1.09516 1.18070 0.85884 0.83513 0.81699
1.91234 1.66879 1.39149 1.37307 1.47817 1.06658 1.47773 1.31969
1.21991 0.96004 0.96536 0.87405 1.21879 0.96509 1.02204 0.95826
1.21488 0.94657 0.99826 0.98884 1.21863 1.00766 1.00567 0.92569
1.21431 0.78857 0.98955 0.96231 0.91457 1.20924 0.94705 0.96372
0.84309 1.42384 1.53597 1.37307 1.00771 1.19494 1.18515 1.09358
0.86347 0.91844 1.25302 1.01724 1.00537 0.99819 1.69811 1.39775
1.31584 1.21460 0.85209 0.77006 0.77998 0.80542 1.19358 1.22043
1.23097 1.20959 0.89048 0.93742 0.86429 1.20907 0.99127 0.86878
1.08700 1.23066 1.00664 0.95507 0.96765 1.22871 1.03233 1.00559
0.92477 1.68049 1.08391 1.30723 1.16942 0.88601 0.87894 0.88055
0.80034 0.90812 0.90009 0.92442 0.88288 0.89627 0.90925 0.92149
0.89625 0.96025 0.96312 0.80108 0.94880 0.87243 0.86977 0.86106
0.87935 0.89797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.41 10.31 71.23 0.73 -0.68 16
2 C 0.32 8.77 7.64 138.70 1.06 9.83 16
3 N -0.53 -15.82 10.32 -186.79 -1.93 -17.75 16
4 C 0.18 5.78 8.90 85.07 0.76 6.54 16
5 C -0.24 -8.33 4.81 -19.91 -0.10 -8.43 16
6 C 0.52 20.38 5.81 86.78 0.50 20.88 16
7 O -0.47 -23.16 9.30 -3.88 -0.04 -23.20 16
8 N -0.61 -18.83 2.97 -798.42 -2.37 -21.21 16
9 C 0.10 2.25 5.34 86.36 0.46 2.71 16
10 C -0.13 -2.10 6.08 30.67 0.19 -1.91 16
11 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16
12 C -0.12 -2.71 5.37 30.67 0.16 -2.54 16
13 C 0.15 4.74 2.95 44.97 0.13 4.87 16
14 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
15 C 0.16 6.98 4.87 86.38 0.42 7.40 16
16 N -0.70 -37.77 3.15 -343.47 -1.08 -38.85 16
17 C -0.20 -12.26 9.68 84.03 0.81 -11.45 16
18 H 0.06 3.75 7.83 -2.91 -0.02 3.72 16
19 C -0.08 -5.12 5.50 84.86 0.47 -4.66 16
20 N -0.97 -63.57 13.06 21.65 0.28 -63.28 16
21 Si 0.96 50.05 29.55 68.60 2.03 52.07 16
22 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16
23 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16
24 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16
25 C 0.24 8.34 6.50 42.92 0.28 8.62 16
26 C -0.14 -4.45 5.19 -11.54 -0.06 -4.51 16
27 C -0.12 -2.98 10.04 30.60 0.31 -2.68 16
28 C -0.15 -4.69 10.23 30.60 0.31 -4.37 16
29 N -0.53 -16.13 9.43 -175.04 -1.65 -17.78 16
30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16
32 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16
33 H 0.18 5.04 7.45 -2.91 -0.02 5.01 16
34 H 0.07 1.65 5.19 -2.38 -0.01 1.64 16
35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
42 H 0.02 1.02 6.50 -2.39 -0.02 1.00 16
43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
44 H 0.37 21.28 6.82 -92.71 -0.63 20.65 16
45 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16
46 H 0.11 3.92 6.81 -2.39 -0.02 3.90 16
47 H 0.11 2.59 7.65 -2.38 -0.02 2.57 16
48 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16
49 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16
50 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16
Total: -1.00 -78.56 392.91 2.19 -76.37
By element:
Atomic # 1 Polarization: 35.30 SS G_CDS: 0.32 Total: 35.62 kcal
Atomic # 6 Polarization: 11.37 SS G_CDS: 6.63 Total: 18.00 kcal
Atomic # 7 Polarization: -152.12 SS G_CDS: -6.75 Total: -158.87 kcal
Atomic # 8 Polarization: -23.16 SS G_CDS: -0.04 Total: -23.20 kcal
Atomic # 14 Polarization: 50.05 SS G_CDS: 2.03 Total: 52.07 kcal
Total: -78.56 2.19 -76.37 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690486047.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.376 kcal
(2) G-P(sol) polarization free energy of solvation -78.559 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.372 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds