Wall clock time and date at job start Wed Apr 1 2020 03:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31888 * 118.95490 * 2 1 4 4 C 1.32125 * 120.96312 * 179.72394 * 3 2 1 5 5 C 1.39971 * 118.92760 * 0.52555 * 4 3 2 6 6 C 1.47830 * 120.93890 * 179.73584 * 5 4 3 7 7 O 1.21553 * 119.99865 * 131.06041 * 6 5 4 8 8 N 1.34780 * 120.00294 * 311.05315 * 6 5 4 9 9 C 1.46924 * 120.63192 * 354.22121 * 8 6 5 10 10 C 1.53188 * 108.77485 * 233.33195 * 9 8 6 11 11 C 1.53043 * 109.31383 * 305.36113 * 10 9 8 12 12 C 1.53045 * 109.53543 * 61.36550 * 11 10 9 13 13 C 1.46931 * 120.62744 * 173.93619 * 8 6 5 14 14 H 1.09004 * 109.58188 * 246.45626 * 13 8 6 15 15 C 1.52998 * 109.59038 * 6.88146 * 13 8 6 16 16 N 1.46497 * 109.47073 * 292.79388 * 15 13 8 17 17 C 1.36935 * 120.00214 * 185.71875 * 16 15 13 18 18 H 1.08001 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00206 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47126 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47200 * 119.99835 * 21 19 17 24 24 H 1.48497 * 109.47140 * 239.99723 * 21 19 17 25 25 C 1.39926 * 118.11895 * 359.47107 * 5 4 3 26 26 C 1.50695 * 120.53715 * 180.24443 * 25 5 4 27 27 C 1.53000 * 117.50119 * 193.08542 * 26 25 5 28 28 C 1.53003 * 60.00269 * 252.51199 * 27 26 25 29 29 N 1.31861 * 118.95087 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47253 * 270.01907 * 1 2 3 31 31 H 1.09005 * 109.47420 * 30.02084 * 1 2 3 32 32 H 1.09004 * 109.47448 * 150.01746 * 1 2 3 33 33 H 1.08004 * 120.53676 * 180.26795 * 4 3 2 34 34 H 1.09004 * 109.58293 * 353.11190 * 9 8 6 35 35 H 1.08999 * 109.58848 * 113.39961 * 9 8 6 36 36 H 1.09000 * 109.50100 * 65.31207 * 10 9 8 37 37 H 1.08996 * 109.49611 * 185.41272 * 10 9 8 38 38 H 1.08991 * 109.46442 * 181.38554 * 11 10 9 39 39 H 1.09002 * 109.45957 * 301.36178 * 11 10 9 40 40 H 1.08998 * 109.49590 * 58.58675 * 12 11 10 41 41 H 1.09004 * 109.49584 * 178.65389 * 12 11 10 42 42 H 1.08998 * 109.46978 * 52.79004 * 15 13 8 43 43 H 1.08993 * 109.47109 * 172.79229 * 15 13 8 44 44 H 0.97002 * 120.00201 * 5.71279 * 16 15 13 45 45 H 0.96996 * 120.00023 * 180.02562 * 20 19 17 46 46 H 1.09001 * 115.55471 * 338.79742 * 26 25 5 47 47 H 1.09008 * 117.49878 * 0.02562 * 27 26 25 48 48 H 1.08996 * 117.50432 * 145.02261 * 27 26 25 49 49 H 1.08999 * 117.49588 * 252.50948 * 28 27 26 50 50 H 1.08997 * 117.49752 * 107.48255 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2003 0.0055 5 6 4.1855 -0.0002 0.0001 6 6 5.6638 -0.0003 0.0000 7 8 6.2715 -0.6953 0.7906 8 7 6.3377 0.7702 -0.8768 9 6 5.6227 1.5177 -1.9202 10 6 6.2371 1.1750 -3.2810 11 6 7.7436 1.4410 -3.2377 12 6 8.3907 0.5478 -2.1768 13 6 7.8008 0.8834 -0.8034 14 1 8.0750 1.9014 -0.5268 15 6 8.3395 -0.0975 0.2398 16 7 7.8986 0.3175 1.5738 17 6 8.3562 -0.3432 2.6826 18 1 9.0418 -1.1705 2.5735 19 6 7.9389 0.0505 3.9466 20 7 7.1038 1.0590 4.0796 21 14 8.5637 -0.8505 5.4591 22 1 9.4851 -1.9378 5.0421 23 1 9.2874 0.1021 6.3389 24 1 7.4148 -1.4322 6.1985 25 6 3.4660 -1.2004 0.0004 26 6 4.1855 -2.5244 0.0003 27 6 3.3612 -3.7764 -0.3065 28 6 3.8484 -3.5118 1.1196 29 7 2.1452 -1.1538 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5136 33 1 3.9817 2.1492 0.0098 34 1 4.5694 1.2373 -1.9138 35 1 5.7173 2.5874 -1.7332 36 1 6.0597 0.1232 -3.5058 37 1 5.7803 1.7945 -4.0528 38 1 8.1793 1.2213 -4.2123 39 1 7.9205 2.4873 -2.9883 40 1 8.1930 -0.4980 -2.4119 41 1 9.4669 0.7205 -2.1630 42 1 7.9619 -1.0977 0.0273 43 1 9.4288 -0.1050 0.2031 44 1 7.2827 1.0604 1.6718 45 1 6.8125 1.3343 4.9629 46 1 5.2154 -2.4999 -0.3557 47 1 2.2985 -3.6423 -0.5087 48 1 3.8487 -4.5757 -0.8647 49 1 4.6564 -4.1369 1.4995 50 1 3.1062 -3.2035 1.8558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690486047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:40 Heat of formation + Delta-G solvation = 72.003592 kcal Electronic energy + Delta-G solvation = -32228.476008 eV Core-core repulsion = 28257.781679 eV Total energy + Delta-G solvation = -3970.694329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.56492 -41.13336 -38.52547 -37.98579 -36.47380 -34.84667 -34.20716 -33.63403 -33.24996 -31.53369 -29.81827 -27.67681 -26.62359 -25.95480 -24.60825 -24.30208 -23.35798 -23.01218 -22.05738 -21.67145 -20.42926 -19.25511 -18.81134 -17.91679 -17.43075 -16.93133 -16.66306 -16.51273 -16.13279 -15.80346 -15.60410 -15.44040 -15.18161 -15.03788 -14.98465 -14.50263 -14.42050 -14.12711 -13.68974 -13.59334 -13.57530 -13.29369 -13.14348 -13.01620 -12.86593 -12.75561 -12.55686 -12.54661 -12.33038 -12.13799 -12.08180 -11.87573 -11.73484 -11.54359 -11.50834 -11.36789 -11.17062 -10.90165 -10.40085 -10.31146 -9.90131 -9.50527 -8.59631 -7.85889 -5.03005 -0.47714 -0.13671 1.41312 1.43189 1.52347 1.88592 2.01781 2.45631 2.59859 2.76685 2.91877 2.95089 3.26291 3.47398 3.51487 3.77293 3.81933 3.84429 3.93862 3.98256 4.04346 4.05271 4.12171 4.16949 4.32959 4.36975 4.49183 4.54107 4.58119 4.68392 4.69328 4.70103 4.81060 4.87265 4.88495 4.93957 4.98643 5.04241 5.04885 5.09594 5.14330 5.21178 5.23911 5.32163 5.34966 5.50069 5.53444 5.77970 5.82259 6.35146 6.54280 6.92784 7.40634 7.45239 8.21687 8.43696 9.38925 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007927 B = 0.005245 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.329101 B = 5336.802765 C = 7147.908363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.316 3.684 3 N -0.533 5.533 4 C 0.185 3.815 5 C -0.236 4.236 6 C 0.524 3.476 7 O -0.475 6.475 8 N -0.605 5.605 9 C 0.103 3.897 10 C -0.126 4.126 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.148 3.852 14 H 0.067 0.933 15 C 0.163 3.837 16 N -0.700 5.700 17 C -0.204 4.204 18 H 0.064 0.936 19 C -0.083 4.083 20 N -0.973 5.973 21 Si 0.961 3.039 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.303 1.303 25 C 0.244 3.756 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.153 4.153 29 N -0.526 5.526 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.367 0.633 45 H 0.242 0.758 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.121 0.879 49 H 0.102 0.898 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -1.122 -20.092 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 N -0.247 5.247 4 C 0.018 3.982 5 C -0.244 4.244 6 C 0.308 3.692 7 O -0.346 6.346 8 N -0.342 5.342 9 C -0.019 4.019 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.158 4.158 13 C 0.045 3.955 14 H 0.085 0.915 15 C 0.037 3.963 16 N -0.341 5.341 17 C -0.337 4.337 18 H 0.082 0.918 19 C -0.274 4.274 20 N -0.626 5.626 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.220 1.220 24 H -0.231 1.231 25 C 0.098 3.902 26 C -0.156 4.156 27 C -0.160 4.160 28 C -0.191 4.191 29 N -0.241 5.241 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.200 0.800 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.199 0.801 45 H 0.051 0.949 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.139 0.861 49 H 0.121 0.879 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.185 -1.664 -19.585 22.138 hybrid contribution 1.183 0.068 1.690 2.065 sum -9.002 -1.595 -17.895 20.095 Atomic orbital electron populations 1.20739 0.82463 1.05659 1.04967 1.24237 1.00026 0.82842 0.87850 1.68348 1.09351 1.30419 1.16611 1.23637 0.89613 0.97839 0.87092 1.21681 0.96691 0.96490 1.09516 1.18070 0.85884 0.83513 0.81699 1.91234 1.66879 1.39149 1.37307 1.47817 1.06658 1.47773 1.31969 1.21991 0.96004 0.96536 0.87405 1.21879 0.96509 1.02204 0.95826 1.21488 0.94657 0.99826 0.98884 1.21863 1.00766 1.00567 0.92569 1.21431 0.78857 0.98955 0.96231 0.91457 1.20924 0.94705 0.96372 0.84309 1.42384 1.53597 1.37307 1.00771 1.19494 1.18515 1.09358 0.86347 0.91844 1.25302 1.01724 1.00537 0.99819 1.69811 1.39775 1.31584 1.21460 0.85209 0.77006 0.77998 0.80542 1.19358 1.22043 1.23097 1.20959 0.89048 0.93742 0.86429 1.20907 0.99127 0.86878 1.08700 1.23066 1.00664 0.95507 0.96765 1.22871 1.03233 1.00559 0.92477 1.68049 1.08391 1.30723 1.16942 0.88601 0.87894 0.88055 0.80034 0.90812 0.90009 0.92442 0.88288 0.89627 0.90925 0.92149 0.89625 0.96025 0.96312 0.80108 0.94880 0.87243 0.86977 0.86106 0.87935 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.31 71.23 0.73 -0.68 16 2 C 0.32 8.77 7.64 138.70 1.06 9.83 16 3 N -0.53 -15.82 10.32 -186.79 -1.93 -17.75 16 4 C 0.18 5.78 8.90 85.07 0.76 6.54 16 5 C -0.24 -8.33 4.81 -19.91 -0.10 -8.43 16 6 C 0.52 20.38 5.81 86.78 0.50 20.88 16 7 O -0.47 -23.16 9.30 -3.88 -0.04 -23.20 16 8 N -0.61 -18.83 2.97 -798.42 -2.37 -21.21 16 9 C 0.10 2.25 5.34 86.36 0.46 2.71 16 10 C -0.13 -2.10 6.08 30.67 0.19 -1.91 16 11 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16 12 C -0.12 -2.71 5.37 30.67 0.16 -2.54 16 13 C 0.15 4.74 2.95 44.97 0.13 4.87 16 14 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.16 6.98 4.87 86.38 0.42 7.40 16 16 N -0.70 -37.77 3.15 -343.47 -1.08 -38.85 16 17 C -0.20 -12.26 9.68 84.03 0.81 -11.45 16 18 H 0.06 3.75 7.83 -2.91 -0.02 3.72 16 19 C -0.08 -5.12 5.50 84.86 0.47 -4.66 16 20 N -0.97 -63.57 13.06 21.65 0.28 -63.28 16 21 Si 0.96 50.05 29.55 68.60 2.03 52.07 16 22 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 24 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 25 C 0.24 8.34 6.50 42.92 0.28 8.62 16 26 C -0.14 -4.45 5.19 -11.54 -0.06 -4.51 16 27 C -0.12 -2.98 10.04 30.60 0.31 -2.68 16 28 C -0.15 -4.69 10.23 30.60 0.31 -4.37 16 29 N -0.53 -16.13 9.43 -175.04 -1.65 -17.78 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.18 5.04 7.45 -2.91 -0.02 5.01 16 34 H 0.07 1.65 5.19 -2.38 -0.01 1.64 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.02 1.02 6.50 -2.39 -0.02 1.00 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.37 21.28 6.82 -92.71 -0.63 20.65 16 45 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.11 3.92 6.81 -2.39 -0.02 3.90 16 47 H 0.11 2.59 7.65 -2.38 -0.02 2.57 16 48 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 50 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -78.56 392.91 2.19 -76.37 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.32 Total: 35.62 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.63 Total: 18.00 kcal Atomic # 7 Polarization: -152.12 SS G_CDS: -6.75 Total: -158.87 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.04 Total: -23.20 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.03 Total: 52.07 kcal Total: -78.56 2.19 -76.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690486047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.376 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds