Wall clock time and date at job start Wed Apr 1 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47246 * 27.51566 * 3 2 1 5 5 C 1.34774 * 120.00021 * 276.34821 * 4 3 2 6 6 O 1.21568 * 119.99899 * 185.01074 * 5 4 3 7 7 C 1.47712 * 119.99769 * 5.01105 * 5 4 3 8 8 C 1.41501 * 126.51325 * 185.72020 * 7 5 4 9 9 C 1.35371 * 105.49877 * 179.84103 * 8 7 5 10 10 C 1.50701 * 126.38274 * 180.13577 * 9 8 7 11 11 C 1.52998 * 109.47459 * 275.29954 * 10 9 8 12 12 C 1.53001 * 109.47365 * 180.02562 * 11 10 9 13 13 N 1.35033 * 107.22656 * 0.41381 * 9 8 7 14 14 H 0.97005 * 124.87955 * 179.72622 * 13 9 8 15 15 N 1.28458 * 110.23495 * 359.72486 * 13 9 8 16 16 C 1.46498 * 119.99861 * 96.34462 * 4 3 2 17 17 C 1.53036 * 109.46048 * 60.07254 * 16 4 3 18 18 C 1.53201 * 109.31358 * 178.61152 * 17 16 4 19 19 N 1.46926 * 108.77273 * 54.63567 * 18 17 16 20 20 C 1.36937 * 120.63173 * 126.41404 * 19 18 17 21 21 H 1.07999 * 119.99892 * 325.80338 * 20 19 18 22 22 C 1.38806 * 119.99968 * 145.79485 * 20 19 18 23 23 N 1.31622 * 120.00114 * 172.09458 * 22 20 19 24 24 Si 1.86803 * 120.00264 * 352.09615 * 22 20 19 25 25 H 1.48499 * 109.47208 * 88.59600 * 24 22 20 26 26 H 1.48504 * 109.47090 * 208.60018 * 24 22 20 27 27 H 1.48501 * 109.47063 * 328.59767 * 24 22 20 28 28 C 1.46925 * 118.73593 * 306.38685 * 19 18 17 29 29 C 1.53044 * 109.46338 * 299.99975 * 16 4 3 30 30 H 4.40639 * 5.51295 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47611 * 267.51508 * 3 2 1 32 32 H 1.08998 * 109.47147 * 147.51033 * 3 2 1 33 33 H 1.07996 * 127.25259 * 359.97438 * 8 7 5 34 34 H 1.08995 * 109.47367 * 35.30674 * 10 9 8 35 35 H 1.09008 * 109.46939 * 155.30439 * 10 9 8 36 36 H 1.08995 * 109.47419 * 300.00689 * 11 10 9 37 37 H 1.09008 * 109.46649 * 60.00307 * 11 10 9 38 38 H 1.09001 * 109.46488 * 60.00084 * 12 11 10 39 39 H 1.08999 * 109.47412 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.47442 * 300.00306 * 12 11 10 41 41 H 1.09007 * 109.46130 * 180.02562 * 16 4 3 42 42 H 1.09001 * 109.49888 * 298.55979 * 17 16 4 43 43 H 1.09004 * 109.49999 * 58.65968 * 17 16 4 44 44 H 1.08999 * 109.58324 * 294.84714 * 18 17 16 45 45 H 1.09001 * 109.70213 * 174.48983 * 18 17 16 46 46 H 0.96999 * 120.00062 * 180.02562 * 23 22 20 47 47 H 1.08996 * 109.59222 * 293.82207 * 28 19 18 48 48 H 1.09000 * 109.69926 * 173.46709 * 28 19 18 49 49 H 1.09000 * 109.49507 * 301.34034 * 29 16 4 50 50 H 1.09001 * 109.49356 * 61.43669 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2241 -0.6381 5 6 3.2384 -2.3616 0.0773 6 8 3.7289 -3.3536 -0.4259 7 6 2.7558 -2.4029 1.4727 8 6 2.8969 -3.4788 2.3809 9 6 2.3096 -3.0635 3.5277 10 6 2.1957 -3.8487 4.8090 11 6 0.9689 -4.7603 4.7413 12 6 0.8530 -5.5570 6.0424 13 7 1.8393 -1.8170 3.3076 14 1 1.3672 -1.2786 3.9620 15 7 2.1070 -1.4468 2.1070 16 6 3.5113 -1.2124 -2.0539 17 6 4.6432 -0.2060 -2.2722 18 6 5.0576 -0.2215 -3.7470 19 7 3.8680 0.0193 -4.5750 20 6 3.8592 1.0204 -5.5092 21 1 4.3973 1.9380 -5.3225 22 6 3.1588 0.8559 -6.6963 23 7 3.0194 1.8696 -7.5241 24 14 2.4140 -0.8043 -7.1189 25 1 1.0437 -0.8906 -6.5531 26 1 2.3508 -0.9573 -8.5947 27 1 3.2554 -1.8849 -6.5448 28 6 2.6883 -0.8349 -4.3820 29 6 2.3004 -0.8125 -2.9001 30 1 -1.0498 -0.0002 -0.0003 31 1 3.0094 0.0454 1.0267 32 1 3.0089 0.8676 -0.5520 33 1 3.3746 -4.4300 2.1984 34 1 3.0916 -4.4545 4.9447 35 1 2.0915 -3.1611 5.6484 36 1 0.0730 -4.1544 4.6056 37 1 1.0730 -5.4479 3.9018 38 1 0.7486 -4.8691 6.8814 39 1 -0.0208 -6.2068 5.9940 40 1 1.7488 -6.1629 6.1785 41 1 3.8478 -2.2065 -2.3485 42 1 4.2997 0.7924 -2.0015 43 1 5.4969 -0.4782 -1.6516 44 1 5.4857 -1.1925 -3.9960 45 1 5.7946 0.5605 -3.9299 46 1 2.5296 1.7546 -8.3535 47 1 2.9231 -1.8559 -4.6828 48 1 1.8600 -0.4585 -4.9822 49 1 1.4866 -1.5165 -2.7263 50 1 1.9789 0.1916 -2.6234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699779627.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:21 Heat of formation + Delta-G solvation = 101.135820 kcal Electronic energy + Delta-G solvation = -30494.517293 eV Core-core repulsion = 26525.086232 eV Total energy + Delta-G solvation = -3969.431061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.73899 -41.19669 -39.17414 -37.15572 -36.21495 -34.74099 -33.52486 -33.02939 -32.09802 -32.00039 -31.59363 -28.25900 -27.48325 -27.09044 -25.15925 -24.41946 -23.19136 -22.84019 -21.90902 -21.00064 -20.64820 -19.03773 -18.89899 -18.69429 -17.78392 -17.49622 -16.91983 -16.85367 -16.01511 -15.96216 -15.89270 -15.44215 -15.30042 -14.92666 -14.80569 -14.67306 -14.58264 -14.54802 -14.19495 -14.03388 -13.94783 -13.83765 -13.49024 -13.01836 -12.71366 -12.60568 -12.45556 -12.23131 -12.12937 -12.06772 -11.81009 -11.76823 -11.54765 -11.48340 -11.41422 -11.37331 -11.22152 -10.93577 -10.76167 -10.42570 -9.92276 -9.85945 -8.86450 -8.15724 -5.58976 0.47097 1.09220 1.28294 1.39498 1.44383 1.48037 1.90039 2.06015 2.27172 2.39742 2.40496 3.11989 3.25596 3.29819 3.57538 3.65525 3.70857 3.91128 3.97103 4.14306 4.16382 4.18525 4.23846 4.29030 4.43457 4.46420 4.49040 4.61318 4.64146 4.68891 4.70520 4.80971 4.85266 4.88866 4.95621 4.98795 5.02575 5.06371 5.12461 5.13890 5.22885 5.30164 5.35131 5.38955 5.47304 5.47857 5.91725 6.08662 6.14812 6.26194 6.79112 6.80344 6.90880 7.04216 7.58920 8.03086 9.03529 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.002448 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.900182 B =11435.869234 C =11542.676681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.221 3.779 4 N -0.588 5.588 5 C 0.598 3.402 6 O -0.568 6.568 7 C -0.036 4.036 8 C -0.198 4.198 9 C 0.039 3.961 10 C -0.046 4.046 11 C -0.120 4.120 12 C -0.151 4.151 13 N -0.364 5.364 14 H 0.460 0.540 15 N -0.249 5.249 16 C 0.153 3.847 17 C -0.127 4.127 18 C 0.148 3.852 19 N -0.620 5.620 20 C -0.244 4.244 21 H 0.056 0.944 22 C -0.033 4.033 23 N -0.961 5.961 24 Si 0.951 3.049 25 H -0.278 1.278 26 H -0.312 1.312 27 H -0.257 1.257 28 C 0.121 3.879 29 C -0.122 4.122 30 H 0.235 0.765 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.261 0.739 47 H 0.032 0.968 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 -10.719 32.954 34.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.200 4.200 3 C 0.100 3.900 4 N -0.318 5.318 5 C 0.387 3.613 6 O -0.446 6.446 7 C -0.195 4.195 8 C -0.226 4.226 9 C -0.088 4.088 10 C -0.084 4.084 11 C -0.158 4.158 12 C -0.208 4.208 13 N -0.080 5.080 14 H 0.308 0.692 15 N -0.086 5.086 16 C 0.050 3.950 17 C -0.167 4.167 18 C 0.023 3.977 19 N -0.345 5.345 20 C -0.374 4.374 21 H 0.073 0.927 22 C -0.228 4.228 23 N -0.607 5.607 24 Si 0.781 3.219 25 H -0.205 1.205 26 H -0.241 1.241 27 H -0.182 1.182 28 C -0.005 4.005 29 C -0.162 4.162 30 H 0.251 0.749 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.176 0.824 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.823 -10.133 32.359 34.250 hybrid contribution -0.703 -0.870 -0.758 1.351 sum -5.526 -11.003 31.601 33.915 Atomic orbital electron populations 1.25400 0.96566 0.98801 1.01293 1.23456 0.95031 1.01533 0.99946 1.18641 0.84328 0.86874 1.00201 1.47980 1.63359 1.09941 1.10487 1.17414 0.77328 0.82437 0.84159 1.90751 1.46692 1.35495 1.71648 1.21635 1.07247 0.95165 0.95477 1.21629 1.07845 1.00891 0.92233 1.21745 1.00565 0.87543 0.98921 1.20359 1.00641 0.97311 0.90133 1.21513 0.97077 0.98268 0.98957 1.21761 1.02178 1.00205 0.96689 1.43539 1.41620 1.13092 1.09797 0.69237 1.73801 1.16015 1.24746 0.94070 1.20955 0.94747 1.00703 0.78582 1.22241 0.97750 0.99040 0.97651 1.21062 0.88384 0.99352 0.88946 1.44446 1.10517 1.37016 1.42472 1.18832 1.29888 0.94074 0.94563 0.92660 1.26059 1.00972 1.00105 0.95663 1.69874 1.45980 1.32184 1.12687 0.85910 0.78769 0.82153 0.75029 1.20458 1.24093 1.18181 1.21430 0.89963 0.93923 0.95154 1.22159 0.97195 1.01555 0.95277 0.74877 0.86025 0.87615 0.82441 0.88092 0.87947 0.92130 0.92629 0.91581 0.92708 0.92077 0.89776 0.91119 0.89800 0.94912 0.91369 0.92966 0.94988 0.92826 0.92192 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.81 19.25 74.32 1.43 -3.38 16 2 C -0.20 -5.19 10.89 31.12 0.34 -4.85 16 3 C 0.22 5.57 4.78 84.57 0.40 5.97 16 4 N -0.59 -17.60 2.36 -811.70 -1.91 -19.51 16 5 C 0.60 19.16 7.61 86.75 0.66 19.82 16 6 O -0.57 -21.77 16.27 -3.93 -0.06 -21.83 16 7 C -0.04 -0.94 6.69 42.46 0.28 -0.65 16 8 C -0.20 -4.15 10.73 22.41 0.24 -3.91 16 9 C 0.04 0.51 6.48 41.40 0.27 0.78 16 10 C -0.05 -0.27 5.77 29.85 0.17 -0.10 16 11 C -0.12 -0.86 5.92 30.59 0.18 -0.68 16 12 C -0.15 -0.76 9.91 71.98 0.71 -0.05 16 13 N -0.36 -4.70 6.83 -47.92 -0.33 -5.03 16 14 H 0.46 2.40 8.96 -219.99 -1.97 0.43 16 15 N -0.25 -5.14 7.76 -48.17 -0.37 -5.51 16 16 C 0.15 5.16 2.47 45.02 0.11 5.27 16 17 C -0.13 -4.08 5.32 30.67 0.16 -3.91 16 18 C 0.15 5.78 6.52 86.37 0.56 6.34 16 19 N -0.62 -29.59 2.74 -699.10 -1.92 -31.51 16 20 C -0.24 -13.93 10.07 84.03 0.85 -13.09 16 21 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 22 C -0.03 -1.98 5.40 84.86 0.46 -1.52 16 23 N -0.96 -61.20 13.97 21.65 0.30 -60.89 16 24 Si 0.95 48.25 24.26 68.60 1.66 49.92 16 25 H -0.28 -13.43 6.62 99.48 0.66 -12.77 16 26 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 27 H -0.26 -12.53 6.06 99.48 0.60 -11.93 16 28 C 0.12 5.36 4.11 86.36 0.36 5.72 16 29 C -0.12 -4.51 4.90 30.67 0.15 -4.36 16 30 H 0.23 3.96 7.80 -4.43 -0.03 3.93 16 31 H 0.12 2.70 6.00 -2.39 -0.01 2.69 16 32 H 0.11 2.58 6.47 -2.39 -0.02 2.57 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.08 3.16 6.91 -2.38 -0.02 3.14 16 42 H 0.07 2.22 6.73 -2.39 -0.02 2.20 16 43 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 46 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 47 H 0.03 1.42 6.63 -2.39 -0.02 1.41 16 48 H 0.05 2.59 4.46 -2.39 -0.01 2.58 16 49 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.07 2.47 7.34 -2.39 -0.02 2.45 16 Total: -1.00 -76.74 395.88 3.54 -73.20 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -1.18 Total: 13.78 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.34 Total: 7.39 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -4.23 Total: -122.46 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.66 Total: 49.92 kcal Total: -76.74 3.54 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699779627.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.339 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds