Wall clock time and date at job start Wed Apr 1 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47451 * 256.33567 * 3 2 1 5 5 C 1.34780 * 119.99855 * 90.00087 * 4 3 2 6 6 O 1.21277 * 119.99963 * 180.02562 * 5 4 3 7 7 C 1.50704 * 119.99899 * 0.02562 * 5 4 3 8 8 C 1.52995 * 109.47114 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.47385 * 180.02562 * 8 7 5 10 10 C 1.34946 * 126.04296 * 124.99420 * 9 8 7 11 11 C 1.35305 * 107.75286 * 180.02562 * 10 9 8 12 12 C 1.50698 * 126.04322 * 180.02562 * 11 10 9 13 13 C 1.39872 * 107.91829 * 0.02562 * 11 10 9 14 14 N 1.30837 * 108.20240 * 0.02562 * 13 11 10 15 15 C 1.46500 * 120.00526 * 270.00566 * 4 3 2 16 16 C 1.53048 * 109.45825 * 60.02203 * 15 4 3 17 17 C 1.53191 * 109.30913 * 178.60372 * 16 15 4 18 18 N 1.46921 * 108.76608 * 54.65813 * 17 16 15 19 19 C 1.36941 * 120.63155 * 126.40124 * 18 17 16 20 20 H 1.07998 * 120.00147 * 331.82713 * 19 18 17 21 21 C 1.38816 * 119.99864 * 151.82130 * 19 18 17 22 22 N 1.31619 * 120.00037 * 343.07810 * 21 19 18 23 23 Si 1.86795 * 119.99876 * 163.08329 * 21 19 18 24 24 H 1.48500 * 109.47272 * 60.00203 * 23 21 19 25 25 H 1.48503 * 109.47003 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47268 * 299.99631 * 23 21 19 27 27 C 1.46927 * 118.73958 * 306.37847 * 18 17 16 28 28 C 1.53042 * 109.45750 * 299.97183 * 15 4 3 29 29 H 4.40644 * 5.51396 * 179.97438 * 4 1 2 30 30 H 1.09008 * 109.47141 * 136.34012 * 3 2 1 31 31 H 1.09001 * 109.47656 * 16.34161 * 3 2 1 32 32 H 1.09008 * 109.46770 * 60.00081 * 7 5 4 33 33 H 1.09000 * 109.47348 * 300.00215 * 7 5 4 34 34 H 1.08998 * 109.47036 * 60.00436 * 8 7 5 35 35 H 1.09000 * 109.47266 * 300.00361 * 8 7 5 36 36 H 1.08006 * 126.11976 * 0.27838 * 10 9 8 37 37 H 1.08995 * 109.47267 * 90.00104 * 12 11 10 38 38 H 1.09007 * 109.47117 * 210.00099 * 12 11 10 39 39 H 1.09004 * 109.47029 * 329.99527 * 12 11 10 40 40 H 1.07998 * 125.89961 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.46240 * 179.97438 * 15 4 3 42 42 H 1.08999 * 109.49560 * 298.56939 * 16 15 4 43 43 H 1.09000 * 109.49399 * 58.66332 * 16 15 4 44 44 H 1.09000 * 109.59678 * 294.86590 * 17 16 15 45 45 H 1.09004 * 109.69648 * 174.50620 * 17 16 15 46 46 H 0.96995 * 120.00162 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.58819 * 293.82620 * 27 18 17 48 48 H 1.08994 * 109.70383 * 173.46362 * 27 18 17 49 49 H 1.09001 * 109.49730 * 301.33466 * 28 15 4 50 50 H 1.08996 * 109.49631 * 61.39838 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3272 1.3421 5 6 3.3593 -0.6569 2.2352 6 8 3.7631 -0.3866 3.3464 7 6 3.1093 -2.0930 1.8529 8 6 3.4416 -3.0015 3.0382 9 7 3.1992 -4.3977 2.6665 10 6 4.0915 -5.4069 2.7460 11 6 3.4807 -6.5329 2.3101 12 6 4.1023 -7.9031 2.2260 13 6 2.1703 -6.2003 1.9515 14 7 2.0007 -4.9204 2.1638 15 6 3.3777 1.7232 1.7136 16 6 2.0756 2.5181 1.5907 17 6 2.3261 3.9691 2.0132 18 7 3.4386 4.5074 1.2188 19 6 3.2935 5.6733 0.5153 20 1 2.3194 5.9686 0.1543 21 6 4.3986 6.4756 0.2661 22 7 5.5018 6.3118 0.9650 23 14 4.3198 7.7878 -1.0609 24 1 3.2401 8.7547 -0.7376 25 1 5.6202 8.5017 -1.1289 26 1 4.0369 7.1499 -2.3718 27 6 4.7099 3.7713 1.1939 28 6 4.4327 2.3224 0.7808 29 1 -1.0501 0.0002 -0.0002 30 1 3.0090 0.7443 -0.7095 31 1 3.0098 -0.9853 -0.2891 32 1 3.7400 -2.3582 1.0043 33 1 2.0615 -2.2194 1.5804 34 1 2.8113 -2.7365 3.8871 35 1 4.4895 -2.8751 3.3103 36 1 5.1095 -5.3304 3.0985 37 1 3.9390 -8.4343 3.1636 38 1 3.6447 -8.4601 1.4083 39 1 5.1728 -7.8059 2.0450 40 1 1.4270 -6.8820 1.5651 41 1 3.7345 1.7683 2.7425 42 1 1.7311 2.4942 0.5568 43 1 1.3175 2.0766 2.2375 44 1 2.5833 4.0023 3.0719 45 1 1.4295 4.5633 1.8361 46 1 6.2741 6.8721 0.7906 47 1 5.1616 3.7884 2.1858 48 1 5.3877 4.2326 0.4757 49 1 5.3525 1.7417 0.8512 50 1 4.0660 2.2999 -0.2453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699789434.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:53 Heat of formation + Delta-G solvation = 103.042723 kcal Electronic energy + Delta-G solvation = -29949.583977 eV Core-core repulsion = 25980.235606 eV Total energy + Delta-G solvation = -3969.348372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.15151 -41.41219 -39.15820 -37.09164 -35.59513 -34.62317 -33.52778 -32.63747 -32.08499 -31.59614 -30.96750 -28.25491 -27.68208 -26.75706 -25.28510 -23.92360 -23.55601 -21.73743 -21.24063 -20.84154 -20.63400 -19.14771 -18.58703 -18.49499 -17.57545 -17.27307 -16.83787 -16.68608 -16.12372 -15.63551 -15.42270 -15.32701 -15.08132 -14.91716 -14.74975 -14.51375 -14.28092 -14.21947 -14.13255 -13.98983 -13.73559 -13.59743 -13.26706 -13.05427 -12.97853 -12.69198 -12.68275 -12.58040 -12.43641 -12.19885 -12.07488 -11.95721 -11.56410 -11.43917 -11.41621 -11.34738 -11.19437 -10.85139 -10.57295 -10.39559 -9.88030 -9.21596 -8.72536 -7.88837 -5.34912 0.97013 1.31490 1.46168 1.47784 1.49512 1.56550 1.62091 1.90701 1.91118 2.32694 2.50747 3.26819 3.38618 3.48791 3.51253 3.63093 3.76318 3.86491 4.01168 4.04311 4.08727 4.15877 4.26179 4.30145 4.42329 4.46852 4.49061 4.55405 4.60409 4.65052 4.75307 4.77222 4.81772 4.97235 4.98872 5.00738 5.04529 5.07252 5.11807 5.26366 5.30177 5.35460 5.41837 5.47748 5.62410 5.68773 5.80179 6.12905 6.26030 6.37314 6.68769 6.78639 6.98566 7.12762 7.82194 8.35298 9.18018 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.002129 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.716367 B =13149.027553 C =13606.903055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.235 4.235 3 C 0.212 3.788 4 N -0.596 5.596 5 C 0.521 3.479 6 O -0.576 6.576 7 C -0.135 4.135 8 C 0.154 3.846 9 N -0.379 5.379 10 C 0.050 3.950 11 C -0.255 4.255 12 C -0.068 4.068 13 C 0.041 3.959 14 N -0.332 5.332 15 C 0.156 3.844 16 C -0.116 4.116 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.181 3.819 28 C -0.129 4.129 29 H 0.241 0.759 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.199 0.801 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.201 0.799 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.008 0.992 45 H 0.059 0.941 46 H 0.251 0.749 47 H -0.008 1.008 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -27.409 -1.853 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.236 4.236 3 C 0.091 3.909 4 N -0.326 5.326 5 C 0.310 3.690 6 O -0.456 6.456 7 C -0.176 4.176 8 C 0.032 3.968 9 N -0.162 5.162 10 C -0.095 4.095 11 C -0.266 4.266 12 C -0.126 4.126 13 C -0.145 4.145 14 N -0.154 5.154 15 C 0.053 3.947 16 C -0.155 4.155 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.054 3.946 28 C -0.168 4.168 29 H 0.257 0.743 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.215 0.785 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.218 0.782 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.010 0.990 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.043 -26.026 -1.287 26.541 hybrid contribution 0.435 0.690 -0.237 0.849 sum -4.608 -25.336 -1.524 25.797 Atomic orbital electron populations 1.25668 0.96806 0.99795 0.97304 1.23735 0.95427 1.01632 1.02814 1.18636 0.83892 1.04519 0.83846 1.48152 1.64354 1.06324 1.13815 1.20864 0.76094 0.88050 0.83977 1.90708 1.47695 1.84844 1.22330 1.21809 1.05792 0.89377 1.00573 1.21366 1.04134 0.74895 0.96362 1.48677 1.08858 1.08237 1.50392 1.22934 0.97630 0.87561 1.01419 1.20537 0.95274 0.97913 1.12883 1.20076 1.00184 0.90206 1.02157 1.24293 0.97745 0.92812 0.99647 1.77297 1.05281 1.12091 1.20717 1.20844 0.95576 0.79184 0.99139 1.22104 0.96186 0.95589 1.01666 1.20980 0.91316 0.93004 0.92888 1.44310 1.10269 1.24046 1.54435 1.19459 0.94964 0.98087 1.26829 0.91496 1.25825 0.97233 1.00036 1.01416 1.70179 1.04497 1.42404 1.40992 0.85329 0.76459 0.78923 0.79642 1.20263 1.22107 1.20151 1.20534 0.87939 0.88648 0.97444 1.22315 0.98033 0.97133 0.99349 0.74275 0.87322 0.85426 0.86209 0.87629 0.90354 0.86402 0.78458 0.91769 0.91098 0.91259 0.78190 0.90899 0.91569 0.92075 0.97382 0.92275 0.94019 0.98955 0.91986 0.91447 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 19.25 74.32 1.43 -2.21 16 2 C -0.23 -5.31 11.92 31.12 0.37 -4.94 16 3 C 0.21 4.45 5.15 84.57 0.44 4.88 16 4 N -0.60 -15.95 2.37 -808.14 -1.91 -17.87 16 5 C 0.52 13.84 7.67 87.66 0.67 14.52 16 6 O -0.58 -19.64 15.31 -3.02 -0.05 -19.68 16 7 C -0.14 -2.57 4.44 29.85 0.13 -2.44 16 8 C 0.15 2.90 5.80 86.38 0.50 3.40 16 9 N -0.38 -7.31 3.68 -348.08 -1.28 -8.60 16 10 C 0.05 0.76 11.36 83.54 0.95 1.71 16 11 C -0.25 -3.80 6.10 -20.15 -0.12 -3.92 16 12 C -0.07 -0.62 10.37 71.24 0.74 0.12 16 13 C 0.04 0.70 11.96 85.24 1.02 1.72 16 14 N -0.33 -7.35 12.42 -57.02 -0.71 -8.06 16 15 C 0.16 5.31 2.48 45.02 0.11 5.42 16 16 C -0.12 -4.03 4.73 30.67 0.15 -3.89 16 17 C 0.14 6.16 6.52 86.36 0.56 6.73 16 18 N -0.61 -30.53 2.99 -699.10 -2.09 -32.62 16 19 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 20 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 21 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 22 N -0.93 -55.19 11.19 21.65 0.24 -54.95 16 23 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.18 8.71 5.30 86.36 0.46 9.17 16 28 C -0.13 -4.69 5.31 30.67 0.16 -4.53 16 29 H 0.24 3.25 7.80 -4.41 -0.03 3.22 16 30 H 0.11 2.31 6.46 -2.38 -0.02 2.30 16 31 H 0.13 1.86 6.44 -2.39 -0.02 1.84 16 32 H 0.12 1.77 7.40 -2.38 -0.02 1.75 16 33 H 0.11 2.13 7.95 -2.39 -0.02 2.12 16 34 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.12 1.89 8.03 -2.39 -0.02 1.87 16 36 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.07 2.90 6.90 -2.39 -0.02 2.88 16 42 H 0.07 2.28 7.02 -2.39 -0.02 2.27 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 47 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 48 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 49 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.07 2.37 6.72 -2.39 -0.02 2.35 16 Total: -1.00 -72.68 407.86 5.94 -66.74 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.92 Total: 18.75 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 8.79 Total: 9.83 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.75 Total: -122.10 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.68 5.94 -66.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699789434.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.783 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds