Wall clock time and date at job start Wed Apr 1 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31876 * 118.95497 * 2 1 4 4 C 1.32135 * 120.97255 * 180.02562 * 3 2 1 5 5 C 1.39970 * 118.92035 * 0.02562 * 4 3 2 6 6 C 1.47830 * 120.94263 * 180.02562 * 5 4 3 7 7 O 1.21545 * 120.00166 * 133.31755 * 6 5 4 8 8 N 1.34774 * 119.99375 * 313.31683 * 6 5 4 9 9 C 1.47021 * 125.65225 * 5.03415 * 8 6 5 10 10 C 1.54332 * 107.27259 * 181.02408 * 9 8 6 11 11 C 1.55155 * 102.94207 * 22.18485 * 10 9 8 12 12 H 1.09000 * 111.03281 * 82.59121 * 11 10 9 13 13 C 1.52999 * 111.00553 * 206.42413 * 11 10 9 14 14 H 1.09000 * 109.46648 * 55.91295 * 13 11 10 15 15 C 1.53003 * 109.47181 * 175.90567 * 13 11 10 16 16 N 1.46498 * 109.47267 * 295.90722 * 13 11 10 17 17 C 1.36937 * 119.99583 * 154.99596 * 16 13 11 18 18 H 1.07994 * 120.00360 * 0.27916 * 17 16 13 19 19 C 1.38812 * 119.99719 * 179.97438 * 17 16 13 20 20 N 1.31626 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00136 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46985 * 59.99861 * 21 19 17 23 23 H 1.48503 * 109.46910 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46904 * 300.00016 * 21 19 17 25 25 C 1.47433 * 125.64616 * 184.98687 * 8 6 5 26 26 C 1.39933 * 118.12133 * 0.27224 * 5 4 3 27 27 C 1.50699 * 120.53746 * 179.70417 * 26 5 4 28 28 C 1.53005 * 117.49426 * 193.07783 * 27 26 5 29 29 C 1.53004 * 117.49682 * 124.42149 * 27 26 5 30 30 N 1.31852 * 118.95077 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47272 * 89.99820 * 1 2 3 32 32 H 1.09005 * 109.46919 * 210.00003 * 1 2 3 33 33 H 1.09000 * 109.47151 * 329.99414 * 1 2 3 34 34 H 1.07997 * 120.53946 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.87896 * 300.43479 * 9 8 6 36 36 H 1.08993 * 109.88939 * 61.60120 * 9 8 6 37 37 H 1.08997 * 110.71279 * 263.82808 * 10 9 8 38 38 H 1.08988 * 110.72283 * 140.55276 * 10 9 8 39 39 H 1.09001 * 109.47161 * 174.85943 * 15 13 11 40 40 H 1.09000 * 109.47136 * 294.85776 * 15 13 11 41 41 H 1.08995 * 109.47208 * 54.85212 * 15 13 11 42 42 H 0.96995 * 120.00220 * 334.99556 * 16 13 11 43 43 H 0.97001 * 120.00299 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.36627 * 37.06689 * 25 8 6 45 45 H 1.09002 * 110.36482 * 274.75010 * 25 8 6 46 46 H 1.08994 * 115.55071 * 338.75091 * 27 26 5 47 47 H 1.08999 * 117.50321 * 0.02562 * 28 27 26 48 48 H 1.09000 * 117.49177 * 145.02147 * 28 27 26 49 49 H 1.08991 * 117.49671 * 214.97645 * 29 27 26 50 50 H 1.09000 * 117.49705 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1539 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1856 -0.0001 -0.0016 6 6 5.6639 -0.0002 -0.0016 7 8 6.2716 -0.7231 0.7635 8 7 6.3376 0.8012 -0.8502 9 6 5.7354 1.7956 -1.7502 10 6 6.8852 2.4508 -2.5443 11 6 8.0164 1.3926 -2.4547 12 1 7.8854 0.6153 -3.2075 13 6 9.3926 2.0489 -2.5821 14 1 9.4977 2.8230 -1.8219 15 6 10.4817 0.9919 -2.3874 16 7 9.5264 2.6487 -3.9119 17 6 10.3908 3.6925 -4.1083 18 1 10.9771 4.0705 -3.2839 19 6 10.5180 4.2606 -5.3684 20 7 9.8074 3.7963 -6.3744 21 14 11.6976 5.6840 -5.6366 22 1 13.0776 5.2541 -5.2959 23 1 11.6474 6.1072 -7.0591 24 1 11.3051 6.8225 -4.7678 25 6 7.8009 0.8267 -1.0290 26 6 3.4661 -1.2003 -0.0080 27 6 4.1857 -2.5244 -0.0161 28 6 3.3611 -3.7745 -0.3298 29 6 3.8498 -3.5178 1.0980 30 7 2.1452 -1.1538 0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 3.9816 2.1493 -0.0001 35 1 5.0443 1.3049 -2.4355 36 1 5.2090 2.5519 -1.1681 37 1 7.1936 3.3854 -2.0759 38 1 6.5927 2.6159 -3.5811 39 1 11.4589 1.4396 -2.5681 40 1 10.4397 0.6107 -1.3672 41 1 10.3221 0.1725 -3.0882 42 1 9.0028 2.3066 -4.6532 43 1 9.8960 4.1935 -7.2550 44 1 8.2097 -0.1810 -0.9549 45 1 8.2623 1.4795 -0.2879 46 1 5.2151 -2.4977 -0.3732 47 1 2.2984 -3.6392 -0.5307 48 1 3.8485 -4.5704 -0.8930 49 1 4.6582 -4.1450 1.4735 50 1 3.1080 -3.2138 1.8365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699955205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:17 Heat of formation + Delta-G solvation = 51.741968 kcal Electronic energy + Delta-G solvation = -30133.728630 eV Core-core repulsion = 26162.155691 eV Total energy + Delta-G solvation = -3971.572939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73498 -39.91896 -38.00434 -37.44062 -35.31203 -33.94070 -33.35968 -32.40685 -30.65599 -29.58701 -28.99251 -27.48969 -25.78302 -24.93238 -23.88827 -22.82550 -22.54083 -21.60624 -21.30735 -19.89889 -19.70817 -18.23133 -17.61146 -17.07922 -16.68267 -16.13130 -15.89119 -15.67148 -15.39133 -14.77562 -14.31132 -14.18896 -13.97320 -13.62180 -13.52507 -13.27898 -13.08127 -12.91492 -12.83520 -12.63604 -12.48590 -12.29272 -12.15119 -11.89166 -11.84821 -11.77157 -11.61361 -11.26284 -10.91115 -10.78174 -10.76585 -10.64250 -10.54204 -10.42351 -10.27821 -10.06217 -9.89555 -9.67626 -9.62509 -9.54590 -8.94840 -8.73855 -7.00803 -5.80591 -3.09296 0.22104 0.65363 2.43157 2.77193 3.20292 3.41090 3.44136 3.46245 3.46632 3.63036 3.70198 3.93501 4.17577 4.51205 4.52679 4.64609 4.68890 4.70155 4.74006 4.83935 4.91347 5.03532 5.09814 5.15783 5.22699 5.37903 5.40283 5.45462 5.49389 5.51114 5.58642 5.60729 5.80367 5.81241 5.82759 5.89755 5.91324 5.99109 5.99679 6.11726 6.15948 6.31775 6.38759 6.51906 6.57223 6.59362 6.82304 7.05474 7.33113 7.66231 7.68746 7.91273 8.37855 9.49345 10.05916 10.40808 11.41880 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.002338 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.340086 B =11974.562858 C =12864.019778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.335 3.665 3 N -0.523 5.523 4 C 0.186 3.814 5 C -0.234 4.234 6 C 0.584 3.416 7 O -0.526 6.526 8 N -0.608 5.608 9 C 0.092 3.908 10 C -0.115 4.115 11 C -0.102 4.102 12 H 0.081 0.919 13 C 0.186 3.814 14 H 0.050 0.950 15 C -0.168 4.168 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.116 3.884 26 C 0.262 3.738 27 C -0.125 4.125 28 C -0.156 4.156 29 C -0.144 4.144 30 N -0.520 5.520 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.129 0.871 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.103 0.897 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.464 -10.924 13.554 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 N -0.237 5.237 4 C 0.019 3.981 5 C -0.241 4.241 6 C 0.370 3.630 7 O -0.402 6.402 8 N -0.341 5.341 9 C -0.031 4.031 10 C -0.153 4.153 11 C -0.122 4.122 12 H 0.100 0.900 13 C 0.075 3.925 14 H 0.068 0.932 15 C -0.229 4.229 16 N -0.363 5.363 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.006 4.006 26 C 0.116 3.884 27 C -0.144 4.144 28 C -0.193 4.193 29 C -0.181 4.181 30 N -0.235 5.235 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.193 0.807 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.147 0.853 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.080 -11.185 14.012 25.462 hybrid contribution 1.545 0.922 -0.600 1.896 sum -16.535 -10.264 13.412 23.635 Atomic orbital electron populations 1.20628 0.85250 1.04414 1.04227 1.23460 0.98399 0.83188 0.88082 1.68313 1.09530 1.30012 1.15889 1.23612 0.89462 0.97765 0.87243 1.21436 0.96011 0.96211 1.10472 1.17354 0.85568 0.79836 0.80227 1.90807 1.69232 1.41274 1.38937 1.48491 1.08682 1.37618 1.39354 1.22367 0.97576 0.90677 0.92433 1.22584 0.93067 0.98558 1.01047 1.22691 0.96848 0.97746 0.94933 0.90018 1.20125 0.89412 0.93001 0.89931 0.93210 1.22501 1.01433 0.99978 0.98945 1.42353 1.50216 1.38726 1.04994 1.19162 1.15758 1.07595 0.94337 0.91270 1.24717 1.00230 0.99994 0.95895 1.69644 1.43931 1.44037 1.00536 0.86299 0.80845 0.82427 0.76795 1.21320 1.21750 1.21295 1.22373 0.78726 1.02068 0.97481 1.20805 0.88511 0.93340 0.85774 1.21044 0.99650 0.86032 1.07697 1.23041 1.00905 0.96873 0.98478 1.22918 1.03204 1.00169 0.91852 1.68037 1.08810 1.30214 1.16397 0.89181 0.89421 0.89298 0.80691 0.91575 0.91479 0.89941 0.89261 0.92505 0.94371 0.93581 0.78301 0.93480 0.90295 0.90874 0.85287 0.87370 0.88143 0.87816 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.31 36.01 0.37 -0.21 16 2 C 0.33 3.54 7.64 -157.08 -1.20 2.34 16 3 N -0.52 -5.91 10.31 -10.39 -0.11 -6.01 16 4 C 0.19 2.05 9.84 -16.77 -0.17 1.88 16 5 C -0.23 -2.90 5.45 -104.69 -0.57 -3.47 16 6 C 0.58 8.03 6.76 -12.34 -0.08 7.95 16 7 O -0.53 -8.58 15.82 5.33 0.08 -8.50 16 8 N -0.61 -7.79 3.33 -171.63 -0.57 -8.36 16 9 C 0.09 1.04 5.64 -3.06 -0.02 1.02 16 10 C -0.11 -1.56 6.20 -24.89 -0.15 -1.71 16 11 C -0.10 -1.50 2.63 -88.47 -0.23 -1.73 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 13 C 0.19 3.34 2.40 -67.93 -0.16 3.17 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 C -0.17 -2.87 9.23 37.16 0.34 -2.52 16 16 N -0.72 -16.67 4.89 -53.43 -0.26 -16.93 16 17 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 21 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 1.55 5.49 -2.53 -0.01 1.53 16 26 C 0.26 3.21 6.50 -81.81 -0.53 2.68 16 27 C -0.13 -1.40 5.16 -91.77 -0.47 -1.87 16 28 C -0.16 -1.37 10.04 -26.69 -0.27 -1.64 16 29 C -0.14 -1.34 10.24 -26.69 -0.27 -1.61 16 30 N -0.52 -5.97 9.43 -6.67 -0.06 -6.03 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.18 1.56 5.94 -52.49 -0.31 1.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.63 6.01 -51.93 -0.31 0.32 16 37 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 38 H 0.09 1.31 8.14 -51.94 -0.42 0.88 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.55 7.59 -51.93 -0.39 0.15 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.38 9.48 7.80 -40.82 -0.32 9.16 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 45 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 46 H 0.13 1.58 6.76 -51.93 -0.35 1.23 16 47 H 0.11 0.97 7.66 -51.93 -0.40 0.57 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -31.25 406.37 -10.73 -41.97 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.96 Total: 8.40 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.68 Total: -1.01 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.28 Total: -63.75 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.25 -10.73 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699955205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.716 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds