Wall clock time and date at job start Wed Apr 1 2020 03:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95379 * 2 1 4 4 C 1.32137 * 120.96572 * 180.02562 * 3 2 1 5 5 C 1.39969 * 118.92475 * 359.74111 * 4 3 2 6 6 C 1.47828 * 120.94009 * 180.27700 * 5 4 3 7 7 O 1.21550 * 120.00144 * 224.80215 * 6 5 4 8 8 N 1.34775 * 120.00053 * 44.80900 * 6 5 4 9 9 C 1.47029 * 125.64849 * 4.96504 * 8 6 5 10 10 C 1.54316 * 107.27640 * 180.97357 * 9 8 6 11 11 C 1.55159 * 102.86104 * 22.52495 * 10 9 8 12 12 H 1.09001 * 111.03761 * 82.39970 * 11 10 9 13 13 C 1.52999 * 111.00180 * 206.23136 * 11 10 9 14 14 C 1.53004 * 109.47261 * 178.65292 * 13 11 10 15 15 N 1.46498 * 109.47393 * 179.97438 * 14 13 11 16 16 C 1.36936 * 119.99889 * 179.97438 * 15 14 13 17 17 H 1.07991 * 120.00115 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99407 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00471 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99567 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47412 * 89.99858 * 20 18 16 22 22 H 1.48503 * 109.47081 * 209.99719 * 20 18 16 23 23 H 1.48500 * 109.47066 * 329.99391 * 20 18 16 24 24 C 1.47420 * 125.64879 * 185.28020 * 8 6 5 25 25 C 1.39932 * 118.11942 * 0.47010 * 5 4 3 26 26 C 1.50702 * 120.53763 * 179.80683 * 25 5 4 27 27 C 1.52991 * 117.49801 * 166.47739 * 26 25 5 28 28 C 1.52994 * 117.49722 * 235.13995 * 26 25 5 29 29 N 1.31858 * 118.95159 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47049 * 270.03033 * 1 2 3 31 31 H 1.09003 * 109.47123 * 30.02557 * 1 2 3 32 32 H 1.08994 * 109.47130 * 150.02441 * 1 2 3 33 33 H 1.08003 * 120.53596 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.88278 * 300.51837 * 9 8 6 35 35 H 1.08997 * 109.87936 * 61.68345 * 9 8 6 36 36 H 1.09004 * 110.92261 * 264.11508 * 10 9 8 37 37 H 1.08995 * 110.74472 * 140.85826 * 10 9 8 38 38 H 1.09005 * 109.47433 * 298.65288 * 13 11 10 39 39 H 1.08997 * 109.47388 * 58.65169 * 13 11 10 40 40 H 1.08996 * 109.46745 * 300.00197 * 14 13 11 41 41 H 1.09006 * 109.47210 * 59.99812 * 14 13 11 42 42 H 0.97006 * 119.99590 * 0.02562 * 15 14 13 43 43 H 0.97001 * 120.00019 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.36428 * 274.66901 * 24 8 6 45 45 H 1.08996 * 110.37107 * 36.98961 * 24 8 6 46 46 H 1.08996 * 115.54475 * 20.80761 * 26 25 5 47 47 H 1.09004 * 117.49874 * 215.00469 * 27 26 25 48 48 H 1.09000 * 117.50044 * 0.02562 * 27 26 25 49 49 H 1.09002 * 117.50457 * 359.96964 * 28 26 25 50 50 H 1.08999 * 117.50124 * 145.00017 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1856 -0.0001 0.0045 6 6 5.6638 -0.0002 0.0103 7 8 6.2745 -0.7485 -0.7277 8 7 6.3345 0.8293 0.8340 9 6 5.7283 1.7070 1.8458 10 6 6.8755 2.4841 2.5251 11 6 8.0079 2.4239 1.4661 12 1 7.8755 3.1952 0.7074 13 6 9.3831 2.5391 2.1267 14 6 10.4726 2.4421 1.0568 15 7 11.7894 2.5531 1.6892 16 6 12.9235 2.4929 0.9242 17 1 12.8473 2.3633 -0.1452 18 6 14.1712 2.5975 1.5237 19 7 14.2641 2.7549 2.8270 20 14 15.7184 2.5162 0.4801 21 1 16.0908 3.8845 0.0394 22 1 16.8259 1.9357 1.2812 23 1 15.4686 1.6636 -0.7099 24 6 7.7971 1.0117 0.8652 25 6 3.4661 -1.2003 -0.0003 26 6 4.1856 -2.5245 0.0003 27 6 3.3623 -3.7756 0.3124 28 6 3.8457 -3.5136 -1.1162 29 7 2.1453 -1.1538 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 3.9817 2.1493 -0.0009 34 1 5.0389 2.4030 1.3677 35 1 5.1991 1.1080 2.5869 36 1 7.1845 1.9938 3.4483 37 1 6.5819 3.5159 2.7176 38 1 9.4611 3.4982 2.6388 39 1 9.5088 1.7312 2.8475 40 1 10.3946 1.4831 0.5448 41 1 10.3469 3.2501 0.3360 42 1 11.8578 2.6683 2.6500 43 1 15.1360 2.8284 3.2458 44 1 8.2601 0.2563 1.5001 45 1 8.2071 0.9637 -0.1436 46 1 5.2164 -2.4991 0.3537 47 1 3.8515 -4.5736 0.8711 48 1 2.3001 -3.6412 0.5168 49 1 3.1013 -3.2070 -1.8510 50 1 4.6528 -4.1392 -1.4974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700091535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:09 Heat of formation + Delta-G solvation = 48.980768 kcal Electronic energy + Delta-G solvation = -29491.541345 eV Core-core repulsion = 25519.848671 eV Total energy + Delta-G solvation = -3971.692674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83761 -40.05022 -38.08427 -37.47985 -35.21640 -34.08777 -33.48368 -32.85675 -31.09447 -29.69432 -29.38048 -27.19262 -25.83561 -24.87642 -23.64343 -22.97804 -22.62392 -21.48216 -21.33047 -20.35893 -19.91234 -18.36088 -17.55024 -17.12879 -16.82273 -16.44709 -15.86374 -15.64493 -15.48907 -14.86313 -14.63973 -14.37723 -14.16319 -13.83543 -13.52323 -13.40164 -13.19777 -13.15599 -13.01571 -12.91392 -12.77280 -12.46268 -12.21236 -11.98617 -11.91685 -11.72707 -11.68398 -11.42089 -11.10245 -10.85780 -10.83249 -10.70594 -10.59642 -10.49601 -10.38975 -10.09379 -9.99625 -9.72666 -9.67938 -9.63701 -8.87090 -8.86337 -6.91581 -5.76010 -3.04566 0.10847 0.55398 2.35632 2.63345 3.11359 3.35370 3.44536 3.49721 3.51523 3.52984 3.62838 3.85286 4.02780 4.35629 4.42530 4.48104 4.56929 4.60365 4.68627 4.68803 4.76092 4.77283 4.97030 5.03145 5.06734 5.18404 5.30922 5.36012 5.37921 5.41118 5.48760 5.54365 5.55748 5.61355 5.72087 5.75542 5.76741 5.84512 5.85816 5.90484 6.00479 6.05058 6.20048 6.33738 6.35073 6.47364 6.82365 6.86365 7.19733 7.58849 7.71281 7.81658 8.43186 9.54225 10.12249 10.46574 11.46955 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.001991 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.868673 B =14057.989885 C =15017.611770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.336 3.664 3 N -0.524 5.524 4 C 0.187 3.813 5 C -0.236 4.236 6 C 0.583 3.417 7 O -0.518 6.518 8 N -0.612 5.612 9 C 0.095 3.905 10 C -0.128 4.128 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.115 4.115 14 C 0.151 3.849 15 N -0.734 5.734 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.111 3.889 25 C 0.264 3.736 26 C -0.127 4.127 27 C -0.156 4.156 28 C -0.143 4.143 29 N -0.520 5.520 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.176 0.824 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.131 0.869 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.096 0.904 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.903 -6.280 -2.184 31.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 N -0.239 5.239 4 C 0.020 3.980 5 C -0.243 4.243 6 C 0.370 3.630 7 O -0.394 6.394 8 N -0.346 5.346 9 C -0.028 4.028 10 C -0.165 4.165 11 C -0.114 4.114 12 H 0.105 0.895 13 C -0.153 4.153 14 C 0.023 3.977 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.010 4.010 25 C 0.118 3.882 26 C -0.146 4.146 27 C -0.193 4.193 28 C -0.181 4.181 29 N -0.235 5.235 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.193 0.807 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.149 0.851 47 H 0.119 0.881 48 H 0.126 0.874 49 H 0.115 0.885 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -31.521 -6.753 -2.773 32.356 hybrid contribution 1.955 0.269 -0.149 1.979 sum -29.566 -6.485 -2.922 30.409 Atomic orbital electron populations 1.20635 0.85205 1.04507 1.04214 1.23479 0.98420 0.83173 0.87931 1.68322 1.09487 1.30037 1.16017 1.23556 0.89450 0.97652 0.87293 1.21442 0.95939 0.96214 1.10743 1.17360 0.85586 0.80033 0.80039 1.90839 1.69005 1.39022 1.40554 1.48448 1.08685 1.41378 1.36071 1.22234 0.96901 0.92978 0.90656 1.22730 0.94196 1.00826 0.98794 1.22366 0.95332 0.96185 0.97504 0.89505 1.21688 0.92044 1.02586 0.98969 1.20685 0.85409 0.97797 0.93791 1.42363 0.99851 1.88293 1.07323 1.19241 0.84792 1.41748 0.91205 0.91182 1.24749 0.97597 1.02992 0.95794 1.69657 1.23325 1.57097 1.08239 0.86181 0.83245 0.77585 0.79157 1.21729 1.21761 1.20737 1.22473 0.78554 0.97216 1.02783 1.20843 0.88490 0.93424 0.85485 1.21078 0.99707 0.85989 1.07840 1.23042 1.00867 0.96822 0.98587 1.22925 1.03231 1.00137 0.91786 1.68053 1.08838 1.30196 1.16379 0.89192 0.89257 0.89353 0.80730 0.91368 0.91469 0.89995 0.89623 0.91184 0.91536 0.96267 0.96437 0.78326 0.93541 0.90602 0.89746 0.85137 0.88115 0.87393 0.88520 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.31 36.00 0.37 -0.12 16 2 C 0.34 3.17 7.64 -157.06 -1.20 1.97 16 3 N -0.52 -5.22 10.32 -10.39 -0.11 -5.32 16 4 C 0.19 1.80 9.73 -16.77 -0.16 1.63 16 5 C -0.24 -2.65 5.40 -104.69 -0.57 -3.21 16 6 C 0.58 7.49 6.82 -12.34 -0.08 7.41 16 7 O -0.52 -8.33 15.63 5.32 0.08 -8.25 16 8 N -0.61 -6.89 3.33 -171.64 -0.57 -7.46 16 9 C 0.10 0.79 6.00 -3.06 -0.02 0.77 16 10 C -0.13 -1.08 6.42 -24.90 -0.16 -1.24 16 11 C -0.09 -1.05 3.07 -88.47 -0.27 -1.32 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.11 -1.67 4.84 -26.73 -0.13 -1.80 16 14 C 0.15 2.94 6.11 -4.04 -0.02 2.92 16 15 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 16 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 20 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.11 1.38 5.55 -2.53 -0.01 1.37 16 25 C 0.26 2.98 6.50 -81.81 -0.53 2.45 16 26 C -0.13 -1.34 5.15 -91.78 -0.47 -1.82 16 27 C -0.16 -1.29 10.04 -26.70 -0.27 -1.55 16 28 C -0.14 -1.29 10.24 -26.70 -0.27 -1.56 16 29 N -0.52 -5.46 9.43 -6.67 -0.06 -5.52 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.18 1.28 6.22 -52.48 -0.33 0.95 16 34 H 0.07 0.45 5.66 -51.93 -0.29 0.16 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.99 8.10 -51.93 -0.42 0.56 16 40 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 10.14 7.67 -40.82 -0.31 9.82 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 45 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 46 H 0.13 1.54 6.66 -51.93 -0.35 1.19 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.11 0.89 7.65 -51.93 -0.40 0.49 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -34.09 406.73 -11.14 -45.23 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.93 Total: 5.78 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -4.05 Total: -1.56 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.35 Total: -64.95 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.09 -11.14 -45.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700091535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.213 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds