Wall clock time and date at job start Wed Apr 1 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95379 * 2 1 4 4 C 1.32137 * 120.96572 * 180.02562 * 3 2 1 5 5 C 1.39969 * 118.92475 * 359.74111 * 4 3 2 6 6 C 1.47828 * 120.94009 * 180.27700 * 5 4 3 7 7 O 1.21550 * 120.00144 * 224.80215 * 6 5 4 8 8 N 1.34775 * 120.00053 * 44.80900 * 6 5 4 9 9 C 1.47029 * 125.64849 * 4.96504 * 8 6 5 10 10 C 1.54316 * 107.27640 * 180.97357 * 9 8 6 11 11 C 1.55159 * 102.86104 * 22.52495 * 10 9 8 12 12 H 1.09001 * 111.03761 * 82.39970 * 11 10 9 13 13 C 1.52999 * 111.00180 * 206.23136 * 11 10 9 14 14 C 1.53004 * 109.47261 * 178.65292 * 13 11 10 15 15 N 1.46498 * 109.47393 * 179.97438 * 14 13 11 16 16 C 1.36936 * 119.99889 * 179.97438 * 15 14 13 17 17 H 1.07991 * 120.00115 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99407 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00471 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99567 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47412 * 89.99858 * 20 18 16 22 22 H 1.48503 * 109.47081 * 209.99719 * 20 18 16 23 23 H 1.48500 * 109.47066 * 329.99391 * 20 18 16 24 24 C 1.47420 * 125.64879 * 185.28020 * 8 6 5 25 25 C 1.39932 * 118.11942 * 0.47010 * 5 4 3 26 26 C 1.50702 * 120.53763 * 179.80683 * 25 5 4 27 27 C 1.52991 * 117.49801 * 166.47739 * 26 25 5 28 28 C 1.52994 * 117.49722 * 235.13995 * 26 25 5 29 29 N 1.31858 * 118.95159 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47049 * 270.03033 * 1 2 3 31 31 H 1.09003 * 109.47123 * 30.02557 * 1 2 3 32 32 H 1.08994 * 109.47130 * 150.02441 * 1 2 3 33 33 H 1.08003 * 120.53596 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.88278 * 300.51837 * 9 8 6 35 35 H 1.08997 * 109.87936 * 61.68345 * 9 8 6 36 36 H 1.09004 * 110.92261 * 264.11508 * 10 9 8 37 37 H 1.08995 * 110.74472 * 140.85826 * 10 9 8 38 38 H 1.09005 * 109.47433 * 298.65288 * 13 11 10 39 39 H 1.08997 * 109.47388 * 58.65169 * 13 11 10 40 40 H 1.08996 * 109.46745 * 300.00197 * 14 13 11 41 41 H 1.09006 * 109.47210 * 59.99812 * 14 13 11 42 42 H 0.97006 * 119.99590 * 0.02562 * 15 14 13 43 43 H 0.97001 * 120.00019 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.36428 * 274.66901 * 24 8 6 45 45 H 1.08996 * 110.37107 * 36.98961 * 24 8 6 46 46 H 1.08996 * 115.54475 * 20.80761 * 26 25 5 47 47 H 1.09004 * 117.49874 * 215.00469 * 27 26 25 48 48 H 1.09000 * 117.50044 * 0.02562 * 27 26 25 49 49 H 1.09002 * 117.50457 * 359.96964 * 28 26 25 50 50 H 1.08999 * 117.50124 * 145.00017 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1856 -0.0001 0.0045 6 6 5.6638 -0.0002 0.0103 7 8 6.2745 -0.7485 -0.7277 8 7 6.3345 0.8293 0.8340 9 6 5.7283 1.7070 1.8458 10 6 6.8755 2.4841 2.5251 11 6 8.0079 2.4239 1.4661 12 1 7.8755 3.1952 0.7074 13 6 9.3831 2.5391 2.1267 14 6 10.4726 2.4421 1.0568 15 7 11.7894 2.5531 1.6892 16 6 12.9235 2.4929 0.9242 17 1 12.8473 2.3633 -0.1452 18 6 14.1712 2.5975 1.5237 19 7 14.2641 2.7549 2.8270 20 14 15.7184 2.5162 0.4801 21 1 16.0908 3.8845 0.0394 22 1 16.8259 1.9357 1.2812 23 1 15.4686 1.6636 -0.7099 24 6 7.7971 1.0117 0.8652 25 6 3.4661 -1.2003 -0.0003 26 6 4.1856 -2.5245 0.0003 27 6 3.3623 -3.7756 0.3124 28 6 3.8457 -3.5136 -1.1162 29 7 2.1453 -1.1538 0.0005 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 3.9817 2.1493 -0.0009 34 1 5.0389 2.4030 1.3677 35 1 5.1991 1.1080 2.5869 36 1 7.1845 1.9938 3.4483 37 1 6.5819 3.5159 2.7176 38 1 9.4611 3.4982 2.6388 39 1 9.5088 1.7312 2.8475 40 1 10.3946 1.4831 0.5448 41 1 10.3469 3.2501 0.3360 42 1 11.8578 2.6683 2.6500 43 1 15.1360 2.8284 3.2458 44 1 8.2601 0.2563 1.5001 45 1 8.2071 0.9637 -0.1436 46 1 5.2164 -2.4991 0.3537 47 1 3.8515 -4.5736 0.8711 48 1 2.3001 -3.6412 0.5168 49 1 3.1013 -3.2070 -1.8510 50 1 4.6528 -4.1392 -1.4974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700091535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:08 Heat of formation + Delta-G solvation = 28.150015 kcal Electronic energy + Delta-G solvation = -29492.444634 eV Core-core repulsion = 25519.848671 eV Total energy + Delta-G solvation = -3972.595963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61054 -40.96080 -39.03888 -38.28000 -36.86477 -35.01000 -34.42694 -34.04840 -32.65274 -30.77598 -30.14998 -28.45773 -26.68038 -26.07665 -24.99262 -24.01183 -23.32419 -22.71681 -22.23990 -21.33752 -20.86740 -19.16796 -19.13471 -18.39353 -17.62585 -17.39613 -16.67895 -16.63368 -16.52545 -16.19208 -15.93305 -15.36143 -15.22243 -15.09600 -14.94198 -14.62007 -14.26945 -14.09730 -13.92865 -13.62606 -13.41560 -13.31564 -13.08494 -13.01182 -12.98888 -12.82589 -12.76418 -12.61552 -12.39323 -12.34685 -12.18258 -12.01197 -11.72637 -11.58993 -11.55770 -11.44586 -11.31983 -11.04487 -10.93286 -10.49818 -10.40930 -9.78879 -9.00812 -7.96950 -5.25546 -0.66227 -0.20540 1.41911 1.46080 1.47703 1.56310 1.73208 2.36992 2.54712 2.66429 2.85553 2.88935 3.12756 3.19983 3.36540 3.56070 3.58405 3.67752 3.78521 3.86695 3.94663 4.00001 4.06531 4.15737 4.23576 4.30876 4.44407 4.48796 4.53912 4.58723 4.67994 4.69977 4.75189 4.78409 4.80911 4.83211 4.89349 4.91467 4.94150 5.02801 5.08370 5.13151 5.19791 5.25977 5.29547 5.38054 5.46131 5.48962 5.71458 6.26317 6.29273 6.84140 6.86656 7.32286 8.09122 8.32040 9.26462 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.001991 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.868673 B =14057.989885 C =15017.611770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.330 3.670 3 N -0.531 5.531 4 C 0.196 3.804 5 C -0.252 4.252 6 C 0.583 3.417 7 O -0.562 6.562 8 N -0.609 5.609 9 C 0.093 3.907 10 C -0.117 4.117 11 C -0.084 4.084 12 H 0.096 0.904 13 C -0.100 4.100 14 C 0.147 3.853 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.973 3.027 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.110 3.890 25 C 0.255 3.745 26 C -0.148 4.148 27 C -0.136 4.136 28 C -0.143 4.143 29 N -0.528 5.528 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.198 0.802 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.019 0.981 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.171 -5.524 -2.123 33.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 N -0.246 5.246 4 C 0.029 3.971 5 C -0.260 4.260 6 C 0.371 3.629 7 O -0.442 6.442 8 N -0.341 5.341 9 C -0.029 4.029 10 C -0.155 4.155 11 C -0.103 4.103 12 H 0.114 0.886 13 C -0.138 4.138 14 C 0.021 3.979 15 N -0.391 5.391 16 C -0.380 4.380 17 H 0.090 0.910 18 C -0.269 4.269 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.197 1.197 24 C -0.012 4.012 25 C 0.109 3.891 26 C -0.167 4.167 27 C -0.173 4.173 28 C -0.180 4.180 29 N -0.243 5.243 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.215 0.785 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.113 0.887 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -33.843 -5.982 -2.716 34.475 hybrid contribution 2.582 0.014 -0.191 2.590 sum -31.261 -5.967 -2.907 31.958 Atomic orbital electron populations 1.20792 0.82573 1.05483 1.05476 1.24261 1.00011 0.82791 0.86428 1.68444 1.09418 1.30173 1.16560 1.23883 0.89475 0.97836 0.85908 1.21329 0.94783 0.97084 1.12788 1.17625 0.86290 0.79470 0.79509 1.90805 1.69992 1.40887 1.42473 1.48477 1.08166 1.41290 1.36178 1.22460 0.97148 0.92991 0.90264 1.22729 0.92608 1.02500 0.97649 1.22226 0.94347 0.95317 0.98447 0.88583 1.21524 0.92169 1.02700 0.97435 1.20878 0.84564 0.97256 0.95193 1.42598 1.01316 1.88195 1.06956 1.19627 0.86089 1.40607 0.91649 0.90993 1.25576 1.00673 1.03571 0.97034 1.69803 1.23691 1.58592 1.09758 0.85146 0.79244 0.77677 0.77739 1.21168 1.21973 1.19731 1.22350 0.79511 0.97922 1.01390 1.20995 0.89067 0.93670 0.85381 1.21040 0.99254 0.86909 1.09522 1.23096 1.00727 0.95645 0.97839 1.22973 1.03364 0.99610 0.92090 1.68133 1.08283 1.30766 1.17086 0.87570 0.88158 0.88466 0.78519 0.88919 0.90550 0.89855 0.86957 0.90618 0.91946 0.96832 0.96263 0.79313 0.93925 0.91881 0.91896 0.87069 0.86646 0.87082 0.88660 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.31 71.24 0.73 -0.01 16 2 C 0.33 5.64 7.64 138.70 1.06 6.70 16 3 N -0.53 -9.47 10.32 -186.78 -1.93 -11.40 16 4 C 0.20 3.41 9.73 85.07 0.83 4.23 16 5 C -0.25 -5.55 5.40 -19.91 -0.11 -5.66 16 6 C 0.58 15.21 6.82 86.78 0.59 15.80 16 7 O -0.56 -19.04 15.63 -3.87 -0.06 -19.10 16 8 N -0.61 -13.36 3.33 -815.24 -2.71 -16.08 16 9 C 0.09 1.31 6.00 86.72 0.52 1.83 16 10 C -0.12 -1.64 6.42 31.78 0.20 -1.44 16 11 C -0.08 -1.75 3.07 -9.40 -0.03 -1.78 16 12 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 13 C -0.10 -2.84 4.84 30.60 0.15 -2.69 16 14 C 0.15 5.78 6.11 86.38 0.53 6.31 16 15 N -0.75 -38.45 5.60 -343.45 -1.92 -40.37 16 16 C -0.25 -14.16 9.99 84.03 0.84 -13.33 16 17 H 0.07 3.99 7.83 -2.92 -0.02 3.97 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 20 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 C 0.11 2.77 5.55 86.86 0.48 3.26 16 25 C 0.25 5.71 6.50 42.92 0.28 5.99 16 26 C -0.15 -3.20 5.15 -11.54 -0.06 -3.26 16 27 C -0.14 -2.15 10.04 30.62 0.31 -1.84 16 28 C -0.14 -2.57 10.24 30.62 0.31 -2.26 16 29 N -0.53 -10.51 9.43 -175.02 -1.65 -12.16 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.20 2.33 6.22 -2.91 -0.02 2.31 16 34 H 0.09 0.89 5.66 -2.39 -0.01 0.88 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.19 8.04 -2.38 -0.02 1.18 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.01 0.56 7.46 -2.39 -0.02 0.54 16 41 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.37 20.19 7.67 -92.70 -0.71 19.48 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.06 1.73 8.00 -2.39 -0.02 1.71 16 45 H 0.06 1.84 8.02 -2.39 -0.02 1.82 16 46 H 0.11 2.81 6.66 -2.39 -0.02 2.80 16 47 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.11 1.70 7.65 -2.39 -0.02 1.68 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.99 406.73 1.39 -73.61 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.24 Total: 28.07 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 7.11 Total: 7.88 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -7.93 Total: -139.32 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -74.99 1.39 -73.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700091535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.759 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds