Wall clock time and date at job start Wed Apr 1 2020 03:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30093 * 124.98225 * 2 1 4 4 C 1.35848 * 109.53580 * 179.97438 * 3 2 1 5 5 C 1.39727 * 133.50834 * 180.02562 * 4 3 2 6 6 C 1.37843 * 120.10669 * 180.25066 * 5 4 3 7 7 C 1.38327 * 120.72390 * 359.47696 * 6 5 4 8 8 C 1.39395 * 120.28799 * 0.49868 * 7 6 5 9 9 C 1.47529 * 120.25508 * 179.74126 * 8 7 6 10 10 O 1.21585 * 120.00430 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99388 * 0.02691 * 9 8 7 12 12 C 1.46499 * 119.99721 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46699 * 324.99408 * 12 11 9 14 14 C 1.53000 * 109.47250 * 204.99875 * 12 11 9 15 15 N 1.46502 * 109.46952 * 54.99705 * 14 12 11 16 16 C 1.36938 * 120.00114 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99780 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00384 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99668 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00140 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47296 * 59.99905 * 20 18 16 22 22 H 1.48500 * 109.47157 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47384 * 300.00170 * 20 18 16 24 24 C 1.52991 * 109.47348 * 84.99672 * 12 11 9 25 25 C 1.53003 * 109.47436 * 59.99936 * 24 12 11 26 26 C 1.53001 * 109.47132 * 180.02562 * 24 12 11 27 27 C 1.53006 * 109.47198 * 299.99779 * 24 12 11 28 28 C 1.40191 * 119.49647 * 359.76904 * 8 7 6 29 29 N 1.36116 * 124.97876 * 179.97438 * 2 1 3 30 30 H 0.97002 * 126.31163 * 0.03267 * 29 2 1 31 31 H 1.09003 * 109.46860 * 90.02165 * 1 2 3 32 32 H 1.08996 * 109.47162 * 210.02539 * 1 2 3 33 33 H 1.09003 * 109.47089 * 330.02494 * 1 2 3 34 34 H 1.08002 * 119.94314 * 359.96520 * 5 4 3 35 35 H 1.07997 * 119.63467 * 179.72470 * 6 5 4 36 36 H 1.08004 * 119.85644 * 180.27056 * 7 6 5 37 37 H 0.97000 * 120.00170 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.47234 * 174.99279 * 14 12 11 39 39 H 1.08999 * 109.46956 * 295.00000 * 14 12 11 40 40 H 0.97009 * 120.00195 * 0.02562 * 15 14 12 41 41 H 0.96996 * 119.99866 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.46564 * 59.99778 * 25 24 12 43 43 H 1.08993 * 109.47245 * 179.97438 * 25 24 12 44 44 H 1.08994 * 109.46734 * 300.00406 * 25 24 12 45 45 H 1.09000 * 109.47431 * 60.00251 * 26 24 12 46 46 H 1.09003 * 109.47419 * 179.97438 * 26 24 12 47 47 H 1.08992 * 109.47343 * 300.00117 * 26 24 12 48 48 H 1.09003 * 109.46557 * 60.00435 * 27 24 12 49 49 H 1.08999 * 109.47186 * 179.97438 * 27 24 12 50 50 H 1.08997 * 109.47588 * 300.00198 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5622 0.7041 0.0006 5 6 4.7594 1.4247 0.0013 6 6 5.9667 0.7596 -0.0035 7 6 6.0120 -0.6229 0.0019 8 6 4.8321 -1.3650 0.0017 9 6 4.8812 -2.8395 0.0017 10 8 3.8492 -3.4822 0.0011 11 7 6.0704 -3.4740 0.0023 12 6 6.1193 -4.9381 0.0017 13 1 5.2897 -5.3296 0.5904 14 6 7.4425 -5.4045 0.6122 15 7 7.6003 -4.8152 1.9441 16 6 8.7169 -5.0914 2.6871 17 1 9.4810 -5.7440 2.2914 18 6 8.8662 -4.5336 3.9494 19 7 7.9342 -3.7395 4.4324 20 14 10.3891 -4.9109 4.9632 21 1 11.5978 -4.4613 4.2269 22 1 10.3072 -4.1984 6.2635 23 1 10.4727 -6.3737 5.2053 24 6 6.0118 -5.4514 -1.4355 25 6 7.1763 -4.9019 -2.2619 26 6 6.0622 -6.9806 -1.4360 27 6 4.6885 -4.9852 -2.0459 28 6 3.5981 -0.6996 0.0010 29 7 2.2873 -1.1153 0.0005 30 1 1.9761 -2.0340 0.0005 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 4.7386 2.5045 0.0009 35 1 6.8874 1.3242 -0.0074 36 1 6.9659 -1.1296 0.0025 37 1 6.8937 -2.9612 0.0025 38 1 7.4420 -6.4914 0.6935 39 1 8.2681 -5.0881 -0.0252 40 1 6.9137 -4.2294 2.2998 41 1 8.0387 -3.3493 5.3143 42 1 8.1190 -5.2342 -1.8269 43 1 7.0999 -5.2680 -3.2856 44 1 7.1399 -3.8126 -2.2614 45 1 5.2323 -7.3718 -0.8475 46 1 5.9852 -7.3464 -2.4599 47 1 7.0046 -7.3132 -1.0010 48 1 4.6522 -3.8958 -2.0455 49 1 4.6121 -5.3505 -3.0700 50 1 3.8588 -5.3766 -1.4573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700993840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:27 Heat of formation + Delta-G solvation = 33.816375 kcal Electronic energy + Delta-G solvation = -31122.983491 eV Core-core repulsion = 27150.633239 eV Total energy + Delta-G solvation = -3972.350251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23839 -40.08848 -37.73323 -36.91772 -34.46381 -33.35998 -33.04780 -31.50193 -31.13434 -30.09229 -27.77574 -27.68186 -27.16222 -26.68892 -24.12442 -23.20700 -22.34266 -21.48709 -20.97655 -20.36119 -18.70203 -17.93032 -17.55669 -17.00338 -16.34378 -15.80669 -15.73363 -15.38457 -15.07550 -14.70016 -14.22875 -14.00147 -13.92827 -13.80863 -13.52914 -13.33885 -13.14180 -13.10555 -12.88640 -12.72807 -12.21320 -12.08850 -12.00166 -11.88102 -11.83494 -11.58222 -11.40649 -11.24354 -11.13095 -10.82354 -10.76965 -10.68073 -10.52999 -10.30937 -10.24428 -9.97725 -9.76337 -9.62315 -8.91826 -8.68945 -8.37901 -8.15326 -6.97720 -5.79841 -3.10045 0.58229 1.47609 2.45952 2.90054 3.21462 3.40177 3.42478 3.46039 3.47072 3.93932 3.99430 4.53540 4.57705 4.85004 4.89708 4.91776 5.00215 5.02567 5.11080 5.16048 5.20125 5.35465 5.38436 5.51358 5.54466 5.58223 5.67641 5.70835 5.76010 5.85895 5.88436 5.93419 6.00349 6.05133 6.08971 6.13012 6.25669 6.27171 6.36417 6.39241 6.42516 6.43247 6.46591 6.59459 6.69773 6.74538 6.92078 7.33543 7.65147 7.78715 7.80431 8.37495 8.44269 9.49332 10.05093 10.40258 11.42104 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.003654 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.105652 B = 7660.910127 C = 9400.595966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.276 3.724 3 N -0.493 5.493 4 C 0.034 3.966 5 C -0.040 4.040 6 C -0.136 4.136 7 C -0.057 4.057 8 C -0.125 4.125 9 C 0.564 3.436 10 O -0.555 6.555 11 N -0.698 5.698 12 C 0.150 3.850 13 H 0.087 0.913 14 C 0.141 3.859 15 N -0.731 5.731 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.076 4.076 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.128 4.128 28 C 0.103 3.897 29 N -0.581 5.581 30 H 0.432 0.568 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.404 0.596 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.041 0.959 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 5.527 -14.659 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 N -0.214 5.214 4 C -0.085 4.085 5 C -0.060 4.060 6 C -0.156 4.156 7 C -0.077 4.077 8 C -0.131 4.131 9 C 0.352 3.648 10 O -0.436 6.436 11 N -0.347 5.347 12 C 0.045 3.955 13 H 0.105 0.895 14 C 0.014 3.986 15 N -0.376 5.376 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.077 4.077 25 C -0.199 4.199 26 C -0.198 4.198 27 C -0.186 4.186 28 C -0.011 4.011 29 N -0.192 5.192 30 H 0.274 0.726 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.240 0.760 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.838 5.860 -14.581 19.089 hybrid contribution 1.254 -1.048 0.887 1.859 sum -9.584 4.812 -13.694 17.393 Atomic orbital electron populations 1.20363 0.84199 1.04749 1.04149 1.23662 0.95785 0.81186 0.98469 1.70436 1.00573 1.27560 1.22873 1.19027 0.92277 0.89954 1.07195 1.20421 0.89024 0.99846 0.96720 1.20837 0.97649 0.93926 1.03216 1.21225 0.96634 0.94272 0.95578 1.18931 0.90854 0.92904 1.10455 1.17985 0.84091 0.86668 0.76008 1.90656 1.33554 1.67677 1.51725 1.45813 1.08024 1.07724 1.73179 1.21305 1.00419 0.78891 0.94909 0.89494 1.21100 0.92680 0.96826 0.88042 1.42356 1.24090 1.57483 1.13681 1.19147 0.97366 1.24001 0.97042 0.91237 1.24741 0.98283 0.99975 0.97631 1.69659 1.34045 1.35605 1.18440 0.86284 0.82649 0.77654 0.79652 1.21243 1.21703 1.21305 1.20895 0.95998 0.95770 0.95086 1.21917 0.98163 1.00802 0.99043 1.21882 1.02434 0.94131 1.01364 1.21876 0.96519 1.01086 0.99092 1.18543 0.84861 0.94504 1.03183 1.43112 1.04607 1.10631 1.60880 0.72591 0.89417 0.90061 0.88566 0.84991 0.84546 0.84562 0.76014 0.94680 0.95341 0.78058 0.93417 0.91829 0.93172 0.92876 0.92605 0.92895 0.91844 0.93044 0.94035 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.28 3.40 8.08 -154.77 -1.25 2.15 16 3 N -0.49 -7.25 11.28 -8.23 -0.09 -7.34 16 4 C 0.03 0.51 7.22 -84.71 -0.61 -0.11 16 5 C -0.04 -0.52 10.09 -39.17 -0.40 -0.91 16 6 C -0.14 -1.60 9.99 -39.69 -0.40 -2.00 16 7 C -0.06 -0.76 9.53 -39.12 -0.37 -1.13 16 8 C -0.13 -1.92 5.88 -104.95 -0.62 -2.54 16 9 C 0.56 9.26 6.12 -12.47 -0.08 9.18 16 10 O -0.56 -9.81 12.41 5.29 0.07 -9.75 16 11 N -0.70 -10.96 3.59 -54.85 -0.20 -11.16 16 12 C 0.15 2.43 1.69 -67.94 -0.11 2.31 16 13 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 14 C 0.14 2.65 5.10 -4.04 -0.02 2.63 16 15 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.08 -1.02 0.62 -154.51 -0.10 -1.11 16 25 C -0.14 -1.73 7.97 37.16 0.30 -1.43 16 26 C -0.14 -1.74 8.12 37.16 0.30 -1.43 16 27 C -0.13 -1.75 7.00 37.16 0.26 -1.49 16 28 C 0.10 1.59 6.88 -83.76 -0.58 1.01 16 29 N -0.58 -7.85 6.00 -7.81 -0.05 -7.90 16 30 H 0.43 5.45 7.72 -40.82 -0.32 5.14 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.14 1.62 6.39 -52.48 -0.34 1.28 16 37 H 0.40 6.08 6.63 -40.82 -0.27 5.81 16 38 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 39 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 40 H 0.39 10.05 7.33 -40.82 -0.30 9.75 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 48 H 0.05 0.76 5.78 -51.93 -0.30 0.46 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -32.96 394.49 -9.88 -42.83 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -7.39 Total: 17.47 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.54 Total: -2.15 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: 0.06 Total: -71.33 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.96 -9.88 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700993840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.650 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds