Wall clock time and date at job start Wed Apr 1 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31890 * 118.95160 * 2 1 4 4 C 1.32128 * 120.96476 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92732 * 359.97438 * 4 3 2 6 6 C 1.47835 * 120.94249 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00201 * 174.15877 * 6 5 4 8 8 N 1.34775 * 119.99541 * 354.15210 * 6 5 4 9 9 C 1.46502 * 119.99794 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47217 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47269 * 179.97438 * 10 9 8 12 12 H 1.09004 * 110.77809 * 308.24304 * 11 10 9 13 13 C 1.55151 * 110.72227 * 185.00147 * 11 10 9 14 14 C 1.54909 * 101.61805 * 206.15619 * 13 11 10 15 15 N 1.47428 * 104.83067 * 36.98889 * 14 13 11 16 16 C 1.36936 * 125.64701 * 155.90939 * 15 14 13 17 17 H 1.08007 * 119.99714 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00142 * 359.97438 * 16 15 14 19 19 N 1.31612 * 119.99852 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99819 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47414 * 89.99599 * 20 18 16 22 22 H 1.48501 * 109.46887 * 209.99800 * 20 18 16 23 23 H 1.48506 * 109.47370 * 329.99331 * 20 18 16 24 24 C 1.47028 * 108.70411 * 335.87425 * 15 14 13 25 25 C 1.39929 * 118.12036 * 0.27401 * 5 4 3 26 26 C 1.50699 * 120.54147 * 179.70212 * 25 5 4 27 27 C 1.52995 * 117.50168 * 179.80997 * 26 25 5 28 28 C 1.52998 * 117.49711 * 111.18349 * 26 25 5 29 29 N 1.31859 * 118.95435 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47136 * 90.00353 * 1 2 3 31 31 H 1.08999 * 109.46930 * 209.99558 * 1 2 3 32 32 H 1.08992 * 109.47193 * 330.00057 * 1 2 3 33 33 H 1.08004 * 120.53505 * 179.97438 * 4 3 2 34 34 H 0.96998 * 120.00099 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47381 * 59.99907 * 9 8 6 36 36 H 1.09005 * 109.46862 * 300.00375 * 9 8 6 37 37 H 1.09003 * 109.47304 * 59.99893 * 10 9 8 38 38 H 1.08992 * 109.47511 * 299.99645 * 10 9 8 39 39 H 1.09000 * 111.00633 * 88.06281 * 13 11 10 40 40 H 1.09003 * 111.00425 * 324.24843 * 13 11 10 41 41 H 1.08997 * 110.37173 * 155.82473 * 14 13 11 42 42 H 1.09000 * 110.36675 * 278.04424 * 14 13 11 43 43 H 0.97003 * 120.00192 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.88175 * 120.47756 * 24 15 14 45 45 H 1.09006 * 109.87622 * 241.64286 * 24 15 14 46 46 H 1.09002 * 115.54987 * 325.51925 * 26 25 5 47 47 H 1.08998 * 117.50150 * 359.97438 * 27 26 25 48 48 H 1.09000 * 117.49895 * 145.02764 * 27 26 25 49 49 H 1.09003 * 117.50012 * 214.98409 * 28 26 25 50 50 H 1.08999 * 117.50094 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1855 0.0000 -0.0005 6 6 5.6639 -0.0001 -0.0005 7 8 6.2716 -1.0473 0.1066 8 7 6.3377 1.1611 -0.1194 9 6 7.8027 1.1610 -0.1200 10 6 8.3127 2.5961 -0.2662 11 6 9.8428 2.5961 -0.2661 12 1 10.2295 2.0496 0.5942 13 6 10.3917 4.0471 -0.2868 14 6 11.7760 3.8475 -0.9528 15 7 11.5577 2.8046 -1.9717 16 6 12.3173 2.6150 -3.0952 17 1 12.0745 1.8186 -3.7832 18 6 13.3994 3.4464 -3.3499 19 7 13.6949 4.4171 -2.5118 20 14 14.4351 3.1881 -4.8828 21 1 13.8740 3.9893 -6.0001 22 1 15.8306 3.6202 -4.6158 23 1 14.4243 1.7495 -5.2510 24 6 10.3898 2.0012 -1.5814 25 6 3.4661 -1.2002 -0.0059 26 6 4.1857 -2.5243 -0.0129 27 6 3.3306 -3.7930 -0.0140 28 6 4.0930 -3.3853 1.2484 29 7 2.1453 -1.1538 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 3.9816 2.1494 -0.0009 34 1 5.8527 1.9967 -0.2046 35 1 8.1658 0.5594 -0.9532 36 1 8.1664 0.7402 0.8175 37 1 7.9497 3.1974 0.5674 38 1 7.9492 3.0172 -1.2034 39 1 10.4978 4.4392 0.7247 40 1 9.7576 4.6962 -0.8907 41 1 12.1080 4.7732 -1.4227 42 1 12.5068 3.5134 -0.2163 43 1 14.4508 4.9984 -2.6899 44 1 9.6265 2.0553 -2.3576 45 1 10.6887 0.9649 -1.4239 46 1 5.1220 -2.5476 -0.5704 47 1 2.2476 -3.6701 -0.0092 48 1 3.7043 -4.6513 -0.5724 49 1 4.9682 -3.9754 1.5205 50 1 3.5112 -2.9943 2.0831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714884617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:35 Heat of formation + Delta-G solvation = 58.205659 kcal Electronic energy + Delta-G solvation = -29151.386375 eV Core-core repulsion = 25180.093723 eV Total energy + Delta-G solvation = -3971.292653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81370 -39.63271 -37.89190 -37.53833 -35.35058 -34.09966 -33.45125 -32.96661 -30.94064 -29.47767 -28.83645 -26.71693 -25.72781 -24.80258 -24.00053 -22.61055 -22.36577 -21.33839 -21.12908 -20.11337 -19.42636 -18.21043 -17.95822 -16.89193 -16.74654 -16.11585 -15.79177 -15.59180 -15.44059 -14.94488 -14.69044 -14.54768 -14.23400 -13.75420 -13.72003 -13.63028 -13.04675 -12.91735 -12.55306 -12.32352 -12.29879 -12.03387 -11.96664 -11.82633 -11.73266 -11.66235 -11.58942 -11.11427 -10.92831 -10.85701 -10.76183 -10.53988 -10.16940 -10.09428 -9.97517 -9.84653 -9.75971 -9.73309 -9.69760 -9.46711 -9.21422 -8.63675 -6.81044 -5.63988 -3.05339 0.01223 0.55898 2.52433 2.81877 3.22234 3.35239 3.40473 3.45527 3.47585 3.50223 3.65538 3.91478 4.28295 4.44978 4.50308 4.61259 4.70133 4.74132 4.84067 4.90424 5.04786 5.05316 5.06931 5.25210 5.36806 5.40528 5.43633 5.48166 5.56259 5.59776 5.61061 5.74636 5.83413 5.86845 5.88434 5.97347 5.99479 6.11950 6.18698 6.29472 6.38038 6.48383 6.60374 6.62864 6.76314 6.97322 7.19031 7.53704 7.58250 7.64728 7.87208 7.90784 8.38248 9.24032 9.85157 10.50379 11.39916 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.001872 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.075598 B =14952.985718 C =15521.713706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.340 3.660 3 N -0.526 5.526 4 C 0.189 3.811 5 C -0.246 4.246 6 C 0.567 3.433 7 O -0.521 6.521 8 N -0.722 5.722 9 C 0.118 3.882 10 C -0.117 4.117 11 C -0.097 4.097 12 H 0.073 0.927 13 C -0.139 4.139 14 C 0.151 3.849 15 N -0.605 5.605 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.140 3.860 25 C 0.270 3.730 26 C -0.122 4.122 27 C -0.163 4.163 28 C -0.146 4.146 29 N -0.521 5.521 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.397 0.603 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.011 0.989 43 H 0.251 0.749 44 H 0.022 0.978 45 H 0.019 0.981 46 H 0.149 0.851 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.316 -8.374 8.802 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 N -0.241 5.241 4 C 0.022 3.978 5 C -0.254 4.254 6 C 0.352 3.648 7 O -0.398 6.398 8 N -0.373 5.373 9 C -0.004 4.004 10 C -0.156 4.156 11 C -0.117 4.117 12 H 0.091 0.909 13 C -0.177 4.177 14 C 0.026 3.974 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.209 4.209 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.014 3.986 25 C 0.124 3.876 26 C -0.140 4.140 27 C -0.200 4.200 28 C -0.184 4.184 29 N -0.236 5.236 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.190 0.810 34 H 0.232 0.768 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.029 0.971 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.166 0.834 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.673 -9.039 8.770 29.497 hybrid contribution 1.365 0.479 -0.810 1.658 sum -25.308 -8.560 7.960 27.877 Atomic orbital electron populations 1.20650 0.85187 1.04526 1.04297 1.23527 0.98481 0.83197 0.87405 1.68295 1.09598 1.30120 1.16078 1.23474 0.89721 0.97573 0.87027 1.21551 0.96210 0.96075 1.11544 1.17694 0.85729 0.84255 0.77109 1.90760 1.69308 1.30698 1.48999 1.45981 1.08411 1.08596 1.74317 1.21577 0.77313 0.98583 1.02944 1.21809 0.96739 0.94578 1.02428 1.22099 0.92250 0.98417 0.98926 0.90889 1.23041 1.00475 0.94428 0.99790 1.21921 0.89959 0.95776 0.89758 1.44520 1.30761 1.33898 1.23952 1.19089 1.06247 1.12044 0.97547 0.90555 1.24790 0.98836 0.98297 0.98931 1.69801 1.30161 1.20708 1.36524 0.86075 0.79579 0.77549 0.82329 1.21626 1.21664 1.20747 1.21380 0.90265 0.94159 0.92837 1.21000 0.88345 0.93863 0.84407 1.21317 1.01182 0.86139 1.05387 1.23034 0.99487 0.96740 1.00763 1.22879 1.02827 1.01558 0.91175 1.68120 1.09040 1.30098 1.16340 0.89100 0.89309 0.89226 0.81011 0.76794 0.90612 0.91102 0.91529 0.91068 0.92486 0.92201 0.87696 0.97138 0.93787 0.96002 0.96265 0.83369 0.87546 0.88247 0.87766 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.31 36.01 0.37 -0.12 16 2 C 0.34 3.18 7.64 -157.06 -1.20 1.98 16 3 N -0.53 -5.09 10.32 -10.39 -0.11 -5.19 16 4 C 0.19 1.65 10.80 -16.78 -0.18 1.47 16 5 C -0.25 -2.59 5.91 -104.69 -0.62 -3.20 16 6 C 0.57 6.63 7.75 -12.33 -0.10 6.53 16 7 O -0.52 -7.56 13.57 5.32 0.07 -7.49 16 8 N -0.72 -7.09 5.51 -61.26 -0.34 -7.43 16 9 C 0.12 1.38 5.56 -4.04 -0.02 1.36 16 10 C -0.12 -1.40 4.73 -26.73 -0.13 -1.52 16 11 C -0.10 -1.58 2.93 -88.76 -0.26 -1.84 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.14 -2.51 6.53 -24.59 -0.16 -2.67 16 14 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 15 N -0.61 -15.58 3.39 -170.04 -0.58 -16.16 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 17 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 19 N -0.92 -27.04 10.09 55.49 0.56 -26.49 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.14 2.86 6.24 -3.04 -0.02 2.84 16 25 C 0.27 3.01 6.53 -81.82 -0.53 2.48 16 26 C -0.12 -1.30 4.75 -91.78 -0.44 -1.73 16 27 C -0.16 -1.40 10.04 -26.73 -0.27 -1.67 16 28 C -0.15 -1.33 10.23 -26.73 -0.27 -1.61 16 29 N -0.52 -5.47 9.34 -6.67 -0.06 -5.53 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.17 0.91 6.58 -52.48 -0.35 0.57 16 34 H 0.40 2.75 6.64 -40.82 -0.27 2.48 16 35 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 41 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.44 7.68 -51.93 -0.40 0.05 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.15 1.79 6.16 -51.93 -0.32 1.47 16 47 H 0.11 0.92 7.58 -51.93 -0.39 0.52 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -33.45 402.73 -11.38 -44.83 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.88 Total: 1.08 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -4.09 Total: -0.91 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.52 Total: -60.80 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.45 -11.38 -44.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714884617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.034 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds