Wall clock time and date at job start Wed Apr 1 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31890 * 118.95160 * 2 1 4 4 C 1.32128 * 120.96476 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92732 * 359.97438 * 4 3 2 6 6 C 1.47835 * 120.94249 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00201 * 174.15877 * 6 5 4 8 8 N 1.34775 * 119.99541 * 354.15210 * 6 5 4 9 9 C 1.46502 * 119.99794 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47217 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47269 * 179.97438 * 10 9 8 12 12 H 1.09004 * 110.77809 * 308.24304 * 11 10 9 13 13 C 1.55151 * 110.72227 * 185.00147 * 11 10 9 14 14 C 1.54909 * 101.61805 * 206.15619 * 13 11 10 15 15 N 1.47428 * 104.83067 * 36.98889 * 14 13 11 16 16 C 1.36936 * 125.64701 * 155.90939 * 15 14 13 17 17 H 1.08007 * 119.99714 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00142 * 359.97438 * 16 15 14 19 19 N 1.31612 * 119.99852 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99819 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47414 * 89.99599 * 20 18 16 22 22 H 1.48501 * 109.46887 * 209.99800 * 20 18 16 23 23 H 1.48506 * 109.47370 * 329.99331 * 20 18 16 24 24 C 1.47028 * 108.70411 * 335.87425 * 15 14 13 25 25 C 1.39929 * 118.12036 * 0.27401 * 5 4 3 26 26 C 1.50699 * 120.54147 * 179.70212 * 25 5 4 27 27 C 1.52995 * 117.50168 * 179.80997 * 26 25 5 28 28 C 1.52998 * 117.49711 * 111.18349 * 26 25 5 29 29 N 1.31859 * 118.95435 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47136 * 90.00353 * 1 2 3 31 31 H 1.08999 * 109.46930 * 209.99558 * 1 2 3 32 32 H 1.08992 * 109.47193 * 330.00057 * 1 2 3 33 33 H 1.08004 * 120.53505 * 179.97438 * 4 3 2 34 34 H 0.96998 * 120.00099 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.47381 * 59.99907 * 9 8 6 36 36 H 1.09005 * 109.46862 * 300.00375 * 9 8 6 37 37 H 1.09003 * 109.47304 * 59.99893 * 10 9 8 38 38 H 1.08992 * 109.47511 * 299.99645 * 10 9 8 39 39 H 1.09000 * 111.00633 * 88.06281 * 13 11 10 40 40 H 1.09003 * 111.00425 * 324.24843 * 13 11 10 41 41 H 1.08997 * 110.37173 * 155.82473 * 14 13 11 42 42 H 1.09000 * 110.36675 * 278.04424 * 14 13 11 43 43 H 0.97003 * 120.00192 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.88175 * 120.47756 * 24 15 14 45 45 H 1.09006 * 109.87622 * 241.64286 * 24 15 14 46 46 H 1.09002 * 115.54987 * 325.51925 * 26 25 5 47 47 H 1.08998 * 117.50150 * 359.97438 * 27 26 25 48 48 H 1.09000 * 117.49895 * 145.02764 * 27 26 25 49 49 H 1.09003 * 117.50012 * 214.98409 * 28 26 25 50 50 H 1.08999 * 117.50094 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 -0.0005 5 6 4.1855 0.0000 -0.0005 6 6 5.6639 -0.0001 -0.0005 7 8 6.2716 -1.0473 0.1066 8 7 6.3377 1.1611 -0.1194 9 6 7.8027 1.1610 -0.1200 10 6 8.3127 2.5961 -0.2662 11 6 9.8428 2.5961 -0.2661 12 1 10.2295 2.0496 0.5942 13 6 10.3917 4.0471 -0.2868 14 6 11.7760 3.8475 -0.9528 15 7 11.5577 2.8046 -1.9717 16 6 12.3173 2.6150 -3.0952 17 1 12.0745 1.8186 -3.7832 18 6 13.3994 3.4464 -3.3499 19 7 13.6949 4.4171 -2.5118 20 14 14.4351 3.1881 -4.8828 21 1 13.8740 3.9893 -6.0001 22 1 15.8306 3.6202 -4.6158 23 1 14.4243 1.7495 -5.2510 24 6 10.3898 2.0012 -1.5814 25 6 3.4661 -1.2002 -0.0059 26 6 4.1857 -2.5243 -0.0129 27 6 3.3306 -3.7930 -0.0140 28 6 4.0930 -3.3853 1.2484 29 7 2.1453 -1.1538 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 3.9816 2.1494 -0.0009 34 1 5.8527 1.9967 -0.2046 35 1 8.1658 0.5594 -0.9532 36 1 8.1664 0.7402 0.8175 37 1 7.9497 3.1974 0.5674 38 1 7.9492 3.0172 -1.2034 39 1 10.4978 4.4392 0.7247 40 1 9.7576 4.6962 -0.8907 41 1 12.1080 4.7732 -1.4227 42 1 12.5068 3.5134 -0.2163 43 1 14.4508 4.9984 -2.6899 44 1 9.6265 2.0553 -2.3576 45 1 10.6887 0.9649 -1.4239 46 1 5.1220 -2.5476 -0.5704 47 1 2.2476 -3.6701 -0.0092 48 1 3.7043 -4.6513 -0.5724 49 1 4.9682 -3.9754 1.5205 50 1 3.5112 -2.9943 2.0831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714884617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:34 Heat of formation + Delta-G solvation = 37.787170 kcal Electronic energy + Delta-G solvation = -29152.271788 eV Core-core repulsion = 25180.093723 eV Total energy + Delta-G solvation = -3972.178065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.53893 -40.53235 -39.38292 -38.31773 -36.48734 -35.01749 -34.52917 -34.09801 -32.45918 -30.80354 -29.89918 -28.13366 -26.77418 -26.24775 -24.85835 -23.62330 -23.25031 -22.12838 -22.08662 -21.80971 -20.78956 -18.99483 -18.84951 -18.77799 -17.47198 -17.12703 -16.79082 -16.69976 -16.49809 -16.14902 -15.95641 -15.64671 -15.36931 -14.98808 -14.80082 -14.38281 -14.25355 -13.80177 -13.59710 -13.47735 -13.36686 -13.31816 -13.10084 -13.00687 -12.81303 -12.77948 -12.69003 -12.51826 -12.38074 -12.22769 -12.01414 -11.78143 -11.66860 -11.46230 -11.41833 -11.25852 -11.21837 -10.75991 -10.71762 -10.51110 -10.42704 -10.07951 -8.86996 -7.77560 -5.21602 -0.71918 -0.15499 1.45035 1.46902 1.55636 1.69131 1.96811 2.49119 2.49362 2.69458 2.86591 2.94317 3.23066 3.31246 3.53388 3.70737 3.75006 3.78105 3.94053 3.97155 3.99910 4.05980 4.16697 4.18995 4.34321 4.38013 4.52572 4.65634 4.69010 4.71532 4.72711 4.76022 4.82507 4.85614 4.90951 4.97444 5.03857 5.10620 5.14075 5.20208 5.25286 5.27881 5.30672 5.38801 5.44726 5.53521 5.70690 5.76944 5.84708 6.33093 6.40993 6.87909 7.08449 7.11978 7.80378 8.43858 9.23970 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.001872 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.075598 B =14952.985718 C =15521.713706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.537 5.537 4 C 0.198 3.802 5 C -0.261 4.261 6 C 0.567 3.433 7 O -0.556 6.556 8 N -0.707 5.707 9 C 0.126 3.874 10 C -0.102 4.102 11 C -0.083 4.083 12 H 0.079 0.921 13 C -0.122 4.122 14 C 0.148 3.852 15 N -0.629 5.629 16 C -0.239 4.239 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.283 1.283 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.133 3.867 25 C 0.257 3.743 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.143 4.143 29 N -0.533 5.533 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.207 0.793 34 H 0.414 0.586 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.070 0.930 42 H -0.018 1.018 43 H 0.247 0.753 44 H 0.027 0.973 45 H 0.011 0.989 46 H 0.130 0.870 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.725 -7.942 9.227 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 N -0.251 5.251 4 C 0.031 3.969 5 C -0.269 4.269 6 C 0.353 3.647 7 O -0.435 6.435 8 N -0.360 5.360 9 C 0.002 3.998 10 C -0.140 4.140 11 C -0.103 4.103 12 H 0.098 0.902 13 C -0.160 4.160 14 C 0.023 3.977 15 N -0.356 5.356 16 C -0.369 4.369 17 H 0.094 0.906 18 C -0.262 4.262 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.198 1.198 24 C 0.008 3.992 25 C 0.111 3.889 26 C -0.158 4.158 27 C -0.186 4.186 28 C -0.181 4.181 29 N -0.248 5.248 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.223 0.777 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.000 1.000 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.029 0.971 46 H 0.147 0.853 47 H 0.126 0.874 48 H 0.130 0.870 49 H 0.127 0.873 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -29.131 -8.597 9.200 31.736 hybrid contribution 2.090 0.313 -0.944 2.314 sum -27.041 -8.285 8.256 29.462 Atomic orbital electron populations 1.20794 0.82776 1.05533 1.05340 1.24263 1.00016 0.82912 0.86139 1.68419 1.09902 1.30138 1.16670 1.23991 0.89567 0.98174 0.85183 1.21479 0.95429 0.96757 1.13193 1.17882 0.86238 0.84078 0.76465 1.90749 1.70058 1.32021 1.50674 1.45757 1.07650 1.08987 1.73559 1.21353 0.78303 0.98165 1.01947 1.21653 0.93148 0.95008 1.04162 1.22012 0.95198 0.96530 0.96534 0.90236 1.22877 0.96498 0.95897 1.00747 1.21765 0.93144 0.93771 0.89022 1.44870 1.31845 1.35178 1.23658 1.19446 1.06881 1.11965 0.98567 0.90559 1.25637 1.00222 0.98350 1.01981 1.70062 1.30345 1.21377 1.38040 0.85060 0.77519 0.77787 0.78861 1.21007 1.21927 1.19798 1.21603 0.88813 0.93435 0.95355 1.21156 0.88918 0.94256 0.84576 1.21242 1.01096 0.87103 1.06389 1.23073 0.99281 0.96036 1.00173 1.22908 1.03090 1.01126 0.91016 1.68178 1.08693 1.30749 1.17149 0.87833 0.88443 0.88049 0.77685 0.74800 0.92838 0.91369 0.88160 0.90589 0.89593 0.91330 0.91156 0.99975 0.94354 0.95515 0.97064 0.85264 0.87444 0.86997 0.87323 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.31 71.24 0.73 -0.05 16 2 C 0.33 5.67 7.64 138.70 1.06 6.73 16 3 N -0.54 -9.21 10.32 -186.78 -1.93 -11.13 16 4 C 0.20 3.00 10.80 85.07 0.92 3.92 16 5 C -0.26 -5.20 5.91 -19.91 -0.12 -5.32 16 6 C 0.57 12.74 7.75 86.78 0.67 13.41 16 7 O -0.56 -16.29 13.57 -3.88 -0.05 -16.34 16 8 N -0.71 -12.29 5.51 -465.99 -2.57 -14.86 16 9 C 0.13 2.69 5.56 86.38 0.48 3.17 16 10 C -0.10 -2.07 4.73 30.59 0.14 -1.93 16 11 C -0.08 -2.52 2.93 -9.59 -0.03 -2.55 16 12 H 0.08 2.33 8.14 -2.38 -0.02 2.32 16 13 C -0.12 -4.16 6.53 31.98 0.21 -3.95 16 14 C 0.15 7.28 5.89 86.85 0.51 7.79 16 15 N -0.63 -32.95 3.39 -691.87 -2.35 -35.30 16 16 C -0.24 -13.76 10.27 84.03 0.86 -12.89 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 19 N -0.95 -57.20 10.09 21.65 0.22 -56.98 16 20 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 C 0.13 5.42 6.24 86.74 0.54 5.96 16 25 C 0.26 5.62 6.53 42.92 0.28 5.90 16 26 C -0.14 -3.00 4.75 -11.54 -0.05 -3.06 16 27 C -0.15 -2.47 10.04 30.59 0.31 -2.16 16 28 C -0.14 -2.58 10.23 30.59 0.31 -2.27 16 29 N -0.53 -10.66 9.34 -175.02 -1.63 -12.30 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.21 1.43 6.58 -2.91 -0.02 1.41 16 34 H 0.41 4.26 6.64 -92.71 -0.62 3.65 16 35 H 0.05 1.40 7.69 -2.39 -0.02 1.39 16 36 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.54 7.94 -2.39 -0.02 1.52 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 41 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.03 1.07 7.68 -2.39 -0.02 1.05 16 45 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.13 3.28 6.16 -2.39 -0.01 3.27 16 47 H 0.11 1.77 7.58 -2.39 -0.02 1.75 16 48 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.66 402.73 1.35 -74.30 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.34 Total: 15.01 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 7.30 Total: 9.15 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -8.26 Total: -130.56 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.05 Total: -16.34 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -75.66 1.35 -74.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714884617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.089 kcal (2) G-P(sol) polarization free energy of solvation -75.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds