Wall clock time and date at job start Wed Apr 1 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31876 * 118.95472 * 2 1 4 4 C 1.32132 * 120.97151 * 179.67883 * 3 2 1 5 5 C 1.39981 * 118.91541 * 0.61035 * 4 3 2 6 6 C 1.47835 * 120.93348 * 179.69489 * 5 4 3 7 7 O 1.21552 * 119.99332 * 174.39194 * 6 5 4 8 8 N 1.34769 * 120.00381 * 354.39102 * 6 5 4 9 9 C 1.46497 * 120.00320 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47752 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47600 * 180.02562 * 10 9 8 12 12 H 1.09005 * 110.63983 * 56.68703 * 11 10 9 13 13 C 1.55154 * 110.72370 * 180.02562 * 11 10 9 14 14 C 1.54910 * 101.58506 * 153.86752 * 13 11 10 15 15 N 1.47430 * 104.82702 * 322.98628 * 14 13 11 16 16 C 1.36937 * 125.64767 * 204.08779 * 15 14 13 17 17 H 1.07999 * 120.00083 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99679 * 0.05059 * 16 15 14 19 19 N 1.31612 * 120.00227 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 59.99959 * 20 18 16 22 22 H 1.48494 * 109.47247 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47171 * 300.00303 * 20 18 16 24 24 C 1.47016 * 108.70288 * 24.13423 * 15 14 13 25 25 C 1.39923 * 118.12006 * 359.42709 * 5 4 3 26 26 C 1.50706 * 120.53393 * 180.29288 * 25 5 4 27 27 C 1.52994 * 117.49533 * 179.71510 * 26 25 5 28 28 C 1.52999 * 60.00196 * 252.50875 * 27 26 25 29 29 N 1.31852 * 118.95048 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47085 * 269.98064 * 1 2 3 31 31 H 1.08996 * 109.46707 * 29.97817 * 1 2 3 32 32 H 1.08998 * 109.47186 * 149.97824 * 1 2 3 33 33 H 1.07994 * 120.54544 * 180.30801 * 4 3 2 34 34 H 0.97006 * 120.00052 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.46962 * 60.00228 * 9 8 6 36 36 H 1.09005 * 109.47386 * 300.00668 * 9 8 6 37 37 H 1.08995 * 109.47001 * 300.00781 * 10 9 8 38 38 H 1.09003 * 109.46813 * 59.99999 * 10 9 8 39 39 H 1.09002 * 111.00205 * 271.94118 * 13 11 10 40 40 H 1.09000 * 111.00521 * 35.79167 * 13 11 10 41 41 H 1.08997 * 110.36704 * 204.15321 * 14 13 11 42 42 H 1.08997 * 110.46073 * 81.87547 * 14 13 11 43 43 H 0.97007 * 120.00025 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.88188 * 239.51394 * 24 15 14 45 45 H 1.09006 * 110.01155 * 118.43080 * 24 15 14 46 46 H 1.09002 * 115.54947 * 325.41838 * 26 25 5 47 47 H 1.08996 * 117.50529 * 0.02562 * 27 26 25 48 48 H 1.09009 * 117.49733 * 145.02266 * 27 26 25 49 49 H 1.08993 * 117.50063 * 252.51426 * 28 27 26 50 50 H 1.09001 * 117.49473 * 107.48643 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1539 0.0000 4 6 3.4660 1.2004 0.0064 5 6 4.1856 -0.0003 0.0001 6 6 5.6639 -0.0002 0.0000 7 8 6.2716 -1.0484 0.0974 8 7 6.3378 1.1619 -0.1080 9 6 7.8028 1.1619 -0.1075 10 6 8.3129 2.5982 -0.2405 11 6 9.8429 2.5981 -0.2406 12 1 10.2270 1.9617 -1.0379 13 6 10.3919 4.0432 -0.3738 14 6 11.7763 3.9141 0.3092 15 7 11.5575 2.9852 1.4329 16 6 12.3174 2.9150 2.5699 17 1 12.0742 2.1962 3.3384 18 6 13.3999 3.7681 2.7349 19 7 13.6963 4.6441 1.7984 20 14 14.4361 3.6729 4.2863 21 1 15.0276 2.3158 4.4039 22 1 15.5234 4.6819 4.2180 23 1 13.5815 3.9446 5.4699 24 6 10.3890 2.1459 1.1301 25 6 3.4661 -1.2003 -0.0004 26 6 4.1857 -2.5245 -0.0003 27 6 3.3305 -3.7931 0.0059 28 6 4.0934 -3.3786 1.2657 29 7 2.1453 -1.1538 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 3.9817 2.1492 0.0113 34 1 5.8528 1.9984 -0.1854 35 1 8.1664 0.5677 -0.9459 36 1 8.1659 0.7328 0.8264 37 1 7.9498 3.0277 -1.1742 38 1 7.9493 3.1920 0.5981 39 1 10.4979 4.3258 -1.4212 40 1 9.7582 4.7525 0.1585 41 1 12.1091 4.8842 0.6783 42 1 12.5075 3.5025 -0.3865 43 1 14.4526 5.2405 1.9139 44 1 9.6260 2.2824 1.8965 45 1 10.6845 1.0977 1.0840 46 1 5.1217 -2.5509 -0.5582 47 1 2.2475 -3.6701 0.0096 48 1 3.7039 -4.6545 -0.5480 49 1 4.9686 -3.9672 1.5406 50 1 3.5122 -2.9828 2.0986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714884619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:38 Heat of formation + Delta-G solvation = 38.045476 kcal Electronic energy + Delta-G solvation = -29187.547116 eV Core-core repulsion = 25215.380252 eV Total energy + Delta-G solvation = -3972.166864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.54158 -40.53782 -39.39056 -38.31825 -36.48714 -35.01889 -34.52869 -34.09940 -32.45784 -30.81225 -29.89828 -28.10724 -26.78266 -26.24938 -24.86064 -23.65570 -23.25511 -22.13142 -22.08842 -21.79043 -20.77409 -19.00093 -18.84870 -18.76028 -17.48916 -17.11560 -16.85570 -16.63898 -16.54204 -16.11411 -15.96332 -15.64716 -15.37224 -14.97193 -14.82006 -14.38154 -14.25246 -13.79218 -13.58310 -13.50892 -13.36494 -13.30203 -13.10615 -13.01203 -12.82227 -12.78700 -12.67469 -12.51327 -12.37995 -12.22708 -12.03470 -11.76794 -11.67726 -11.46878 -11.41084 -11.26140 -11.21479 -10.75478 -10.71257 -10.51706 -10.42532 -10.08064 -8.86905 -7.77249 -5.21307 -0.72128 -0.15723 1.44983 1.48205 1.54674 1.69229 1.96423 2.49251 2.49488 2.69637 2.86416 2.93412 3.23393 3.31345 3.53361 3.70686 3.74298 3.78183 3.94630 3.97654 3.99558 4.05652 4.16434 4.18851 4.34439 4.38075 4.52606 4.65252 4.68836 4.71558 4.73581 4.75527 4.82536 4.85470 4.90300 4.97366 5.03245 5.10505 5.14271 5.20111 5.25282 5.28085 5.30655 5.38864 5.44575 5.53432 5.70781 5.76844 5.84877 6.33267 6.40871 6.87819 7.08418 7.12138 7.80642 8.44128 9.24053 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.001904 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.201783 B =14702.788303 C =15369.384690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.537 5.537 4 C 0.198 3.802 5 C -0.261 4.261 6 C 0.567 3.433 7 O -0.556 6.556 8 N -0.707 5.707 9 C 0.125 3.875 10 C -0.102 4.102 11 C -0.083 4.083 12 H 0.079 0.921 13 C -0.121 4.121 14 C 0.148 3.852 15 N -0.629 5.629 16 C -0.241 4.241 17 H 0.076 0.924 18 C -0.069 4.069 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.276 1.276 24 C 0.133 3.867 25 C 0.257 3.743 26 C -0.138 4.138 27 C -0.146 4.146 28 C -0.148 4.148 29 N -0.532 5.532 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.206 0.794 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.070 0.930 42 H -0.018 1.018 43 H 0.247 0.753 44 H 0.026 0.974 45 H 0.011 0.989 46 H 0.132 0.868 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.107 0.893 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.708 -8.781 -7.635 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 N -0.251 5.251 4 C 0.031 3.969 5 C -0.268 4.268 6 C 0.353 3.647 7 O -0.435 6.435 8 N -0.359 5.359 9 C 0.002 3.998 10 C -0.140 4.140 11 C -0.103 4.103 12 H 0.098 0.902 13 C -0.160 4.160 14 C 0.023 3.977 15 N -0.355 5.355 16 C -0.370 4.370 17 H 0.094 0.906 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.202 1.202 24 C 0.008 3.992 25 C 0.111 3.889 26 C -0.157 4.157 27 C -0.183 4.183 28 C -0.186 4.186 29 N -0.247 5.247 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.223 0.777 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.000 1.000 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.029 0.971 46 H 0.150 0.850 47 H 0.126 0.874 48 H 0.132 0.868 49 H 0.126 0.874 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -29.114 -9.414 -7.481 31.499 hybrid contribution 2.091 0.385 0.878 2.300 sum -27.023 -9.029 -6.604 29.247 Atomic orbital electron populations 1.20796 0.82765 1.05573 1.05308 1.24261 1.00020 0.82907 0.86138 1.68412 1.09893 1.30162 1.16662 1.23989 0.89574 0.98168 0.85196 1.21478 0.95412 0.96762 1.13187 1.17885 0.86245 0.84109 0.76433 1.90748 1.70071 1.32024 1.50688 1.45753 1.07636 1.08859 1.73677 1.21355 0.78308 0.98273 1.01891 1.21650 0.93168 0.94798 1.04349 1.22005 0.95207 0.97057 0.96017 0.90220 1.22873 0.96489 0.95940 1.00676 1.21770 0.93140 0.95527 0.87260 1.44859 1.31783 1.40543 1.18347 1.19410 1.06929 1.15314 0.95360 0.90594 1.25637 1.00193 0.98735 1.01568 1.70055 1.30283 1.24787 1.34664 0.85136 0.78004 0.77048 0.79056 1.20689 1.21737 1.20204 1.21578 0.88791 0.93025 0.95788 1.21160 0.88915 0.94257 0.84573 1.21261 1.01174 0.87123 1.06155 1.23070 0.99260 0.96030 0.99960 1.22905 1.03162 1.01416 0.91081 1.68174 1.08695 1.30744 1.17133 0.87880 0.88032 0.88402 0.77738 0.74788 0.91420 0.92865 0.88153 0.90522 0.89577 0.91314 0.91153 0.99968 0.94339 0.95586 0.97093 0.85002 0.87444 0.86833 0.87422 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.31 71.24 0.73 -0.05 16 2 C 0.33 5.69 7.64 138.71 1.06 6.75 16 3 N -0.54 -9.27 10.31 -186.79 -1.93 -11.20 16 4 C 0.20 3.04 10.80 85.07 0.92 3.95 16 5 C -0.26 -5.22 5.91 -19.91 -0.12 -5.34 16 6 C 0.57 12.84 7.75 86.78 0.67 13.51 16 7 O -0.56 -16.42 13.56 -3.88 -0.05 -16.47 16 8 N -0.71 -12.40 5.51 -466.00 -2.57 -14.97 16 9 C 0.13 2.71 5.52 86.38 0.48 3.19 16 10 C -0.10 -2.07 4.71 30.59 0.14 -1.93 16 11 C -0.08 -2.53 2.98 -9.61 -0.03 -2.55 16 12 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 13 C -0.12 -4.15 6.53 31.99 0.21 -3.94 16 14 C 0.15 7.29 5.89 86.85 0.51 7.80 16 15 N -0.63 -32.98 3.39 -691.98 -2.35 -35.33 16 16 C -0.24 -13.87 10.27 84.03 0.86 -13.01 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 19 N -0.95 -57.18 10.09 21.65 0.22 -56.96 16 20 Si 0.98 46.42 29.55 68.60 2.03 48.44 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.13 5.44 5.99 86.73 0.52 5.96 16 25 C 0.26 5.62 6.53 42.92 0.28 5.90 16 26 C -0.14 -2.97 4.76 -11.54 -0.05 -3.03 16 27 C -0.15 -2.42 10.04 30.59 0.31 -2.11 16 28 C -0.15 -2.77 10.23 30.59 0.31 -2.46 16 29 N -0.53 -10.67 9.34 -175.03 -1.63 -12.31 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.21 1.49 6.57 -2.91 -0.02 1.47 16 34 H 0.41 4.30 6.64 -92.70 -0.62 3.68 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.43 7.49 -2.38 -0.02 1.41 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.55 8.06 -2.39 -0.02 1.53 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 41 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 44 H 0.03 1.04 7.76 -2.38 -0.02 1.02 16 45 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 46 H 0.13 3.27 6.14 -2.39 -0.01 3.26 16 47 H 0.11 1.76 7.58 -2.39 -0.02 1.74 16 48 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16 50 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -75.67 402.45 1.33 -74.34 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.34 Total: 15.32 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 7.28 Total: 9.13 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -8.26 Total: -130.76 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.05 Total: -16.47 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -75.67 1.33 -74.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714884619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.386 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds