Wall clock time and date at job start Wed Apr 1 2020 03:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47202 * 2 1 4 4 C 1.53005 * 109.47157 * 120.00197 * 2 1 3 5 5 C 1.52997 * 109.47129 * 62.68359 * 4 2 1 6 6 H 1.08998 * 109.47025 * 304.38622 * 5 4 2 7 7 C 1.52998 * 109.47308 * 64.38945 * 5 4 2 8 8 N 1.46496 * 109.47146 * 174.99507 * 7 5 4 9 9 C 1.36941 * 120.00016 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99557 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99936 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00098 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00360 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47269 * 89.99769 * 13 11 9 15 15 H 1.48502 * 109.47123 * 210.00391 * 13 11 9 16 16 H 1.48508 * 109.46846 * 330.00060 * 13 11 9 17 17 N 1.46507 * 109.46819 * 184.39053 * 5 4 2 18 18 C 1.34770 * 120.00154 * 88.48732 * 17 5 4 19 19 O 1.21731 * 120.00337 * 5.51405 * 18 17 5 20 20 C 1.46423 * 120.00295 * 185.51721 * 18 17 5 21 21 C 1.40109 * 126.86327 * 172.16262 * 20 18 17 22 22 C 1.40065 * 136.36090 * 0.02562 * 21 20 18 23 23 C 1.36079 * 119.46291 * 180.02562 * 22 21 20 24 24 C 1.39482 * 121.57102 * 359.96633 * 23 22 21 25 25 C 1.35818 * 121.84174 * 0.02562 * 24 23 22 26 26 C 1.40932 * 119.54465 * 359.97438 * 25 24 23 27 27 N 1.32146 * 135.41835 * 180.02562 * 26 25 24 28 28 N 1.28452 * 111.38670 * 179.71082 * 27 26 25 29 29 C 1.46496 * 124.15294 * 180.28233 * 28 27 26 30 30 H 1.08999 * 109.46866 * 64.32301 * 1 2 3 31 31 H 1.09007 * 109.46837 * 184.31813 * 1 2 3 32 32 H 1.08999 * 109.47157 * 304.31716 * 1 2 3 33 33 H 1.09002 * 109.47240 * 239.99432 * 2 1 3 34 34 H 1.09003 * 109.47445 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47066 * 300.00009 * 3 2 1 36 36 H 1.09006 * 109.47401 * 60.00093 * 3 2 1 37 37 H 1.09005 * 109.46800 * 302.68243 * 4 2 1 38 38 H 1.09000 * 109.47164 * 182.68511 * 4 2 1 39 39 H 1.08998 * 109.46962 * 294.99800 * 7 5 4 40 40 H 1.09002 * 109.47144 * 54.99729 * 7 5 4 41 41 H 0.97001 * 120.00092 * 0.02562 * 8 7 5 42 42 H 0.96996 * 120.00424 * 179.97438 * 12 11 9 43 43 H 0.97007 * 119.99600 * 268.48859 * 17 5 4 44 44 H 1.07995 * 120.26753 * 359.97061 * 22 21 20 45 45 H 1.07998 * 119.20816 * 179.97438 * 23 22 21 46 46 H 1.08001 * 119.07306 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.22666 * 180.02562 * 25 24 23 48 48 H 1.09005 * 109.47513 * 261.37073 * 29 28 27 49 49 H 1.09002 * 109.47705 * 21.36917 * 29 28 27 50 50 H 1.09003 * 109.47118 * 141.37404 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5859 -2.1820 1.2159 6 1 0.5016 -2.2231 1.1130 7 6 2.2383 -2.8919 0.0279 8 7 1.8993 -4.3166 0.0643 9 6 2.3738 -5.1583 -0.9061 10 1 2.9976 -4.7716 -1.6984 11 6 2.0523 -6.5082 -0.8719 12 7 2.5087 -7.3173 -1.8043 13 14 0.9728 -7.1769 0.4982 14 1 -0.4521 -7.1023 0.0869 15 1 1.3365 -8.5909 0.7696 16 1 1.1761 -6.3689 1.7276 17 7 1.9839 -2.8455 2.4600 18 6 1.1642 -2.8200 3.5294 19 8 0.0524 -2.3337 3.4327 20 6 1.6109 -3.3770 4.8078 21 6 0.9479 -3.2920 6.0392 22 6 -0.2434 -2.7273 6.5122 23 6 -0.5680 -2.8538 7.8276 24 6 0.2583 -3.5349 8.7215 25 6 1.4260 -4.1047 8.3260 26 6 1.8229 -4.0115 6.9769 27 7 2.8564 -4.4316 6.2687 28 7 2.7505 -4.0870 5.0358 29 6 3.7373 -4.4128 4.0032 30 1 -0.3633 0.4453 -0.9262 31 1 -0.3633 -1.0248 0.0774 32 1 -0.3633 0.5794 0.8488 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6379 -0.2360 2.1386 38 1 3.1290 -0.6798 1.2737 39 1 1.8730 -2.4551 -0.9015 40 1 3.3205 -2.7743 0.0840 41 1 1.3382 -4.6637 0.7754 42 1 2.2843 -8.2606 -1.7802 43 1 2.8375 -3.3033 2.5139 44 1 -0.8986 -2.1951 5.8386 45 1 -1.4873 -2.4164 8.1880 46 1 -0.0389 -3.6113 9.7570 47 1 2.0457 -4.6265 9.0403 48 1 4.3905 -3.5553 3.8412 49 1 4.3325 -5.2671 4.3258 50 1 3.2231 -4.6584 3.0739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714934854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:18 Heat of formation + Delta-G solvation = 73.935144 kcal Electronic energy + Delta-G solvation = -30989.164324 eV Core-core repulsion = 27018.553753 eV Total energy + Delta-G solvation = -3970.610571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.65977 -39.75514 -37.86986 -37.40532 -35.13616 -34.05396 -32.87643 -31.97297 -31.42080 -30.06834 -28.96840 -27.80068 -27.12950 -25.91413 -24.04442 -22.98769 -22.33204 -22.15879 -21.27488 -20.19278 -19.56619 -18.09195 -17.71920 -17.39960 -16.62340 -16.46443 -15.97513 -15.50994 -15.14190 -14.63373 -14.48855 -14.30376 -14.23828 -14.02411 -13.81012 -13.55219 -13.49498 -13.22546 -12.96697 -12.79719 -12.53892 -12.28936 -12.14904 -11.99455 -11.91387 -11.88264 -11.85500 -11.44077 -11.04290 -10.93432 -10.88905 -10.60892 -10.44830 -10.41146 -10.27658 -10.19871 -10.04833 -9.72525 -9.09333 -8.99211 -8.78801 -7.86136 -7.39299 -5.89644 -3.26684 0.28788 1.43807 2.07130 2.09358 3.02450 3.10632 3.24323 3.31522 3.37708 3.75529 3.93639 4.27398 4.46507 4.67038 4.72894 4.77475 4.79975 4.85392 4.94304 4.96211 4.99627 5.18229 5.21110 5.25546 5.29054 5.39567 5.45077 5.56939 5.58771 5.64049 5.67724 5.74345 5.80781 5.91125 5.93425 5.96944 6.04635 6.16648 6.20977 6.25918 6.33486 6.34645 6.41166 6.45983 6.48243 6.51455 6.65567 6.80035 7.38892 7.73205 7.85016 8.09158 8.28974 9.06673 9.79018 9.97782 11.28295 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007985 B = 0.004329 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.941696 B = 6466.158445 C = 8809.515226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.126 3.874 6 H 0.100 0.900 7 C 0.148 3.852 8 N -0.756 5.756 9 C -0.249 4.249 10 H 0.093 0.907 11 C 0.011 3.989 12 N -0.929 5.929 13 Si 0.880 3.120 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.283 1.283 17 N -0.719 5.719 18 C 0.592 3.408 19 O -0.521 6.521 20 C -0.034 4.034 21 C -0.101 4.101 22 C -0.056 4.056 23 C -0.131 4.131 24 C -0.101 4.101 25 C -0.077 4.077 26 C 0.048 3.952 27 N -0.275 5.275 28 N -0.218 5.218 29 C 0.055 3.945 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.361 0.639 42 H 0.261 0.739 43 H 0.399 0.601 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.103 0.897 49 H 0.118 0.882 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 13.637 15.856 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.022 3.978 6 H 0.118 0.882 7 C 0.020 3.980 8 N -0.402 5.402 9 C -0.379 4.379 10 H 0.110 0.890 11 C -0.186 4.186 12 N -0.576 5.576 13 Si 0.711 3.289 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.209 1.209 17 N -0.375 5.375 18 C 0.377 3.623 19 O -0.395 6.395 20 C -0.168 4.168 21 C -0.111 4.111 22 C -0.076 4.076 23 C -0.151 4.151 24 C -0.124 4.124 25 C -0.098 4.098 26 C -0.096 4.096 27 N -0.113 5.113 28 N -0.003 5.003 29 C -0.085 4.085 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.194 0.806 42 H 0.071 0.929 43 H 0.239 0.761 44 H 0.152 0.848 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.121 0.879 49 H 0.136 0.864 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.457 13.267 15.495 20.404 hybrid contribution -0.929 -0.592 0.770 1.344 sum -0.472 12.675 16.265 20.626 Atomic orbital electron populations 1.21904 0.95085 1.02432 1.01314 1.21130 0.96191 0.95919 0.98304 1.21821 1.00769 0.96089 1.01510 1.21967 1.00911 0.94371 0.98594 1.21579 1.01967 0.91376 0.82881 0.88246 1.21024 0.97223 0.85147 0.94584 1.42737 1.62118 1.03597 1.31784 1.19028 1.26044 0.89014 1.03775 0.88970 1.24638 1.00009 0.96062 0.97851 1.69684 1.49020 1.04290 1.34639 0.86660 0.81567 0.78383 0.82337 1.20837 1.21547 1.20935 1.46543 1.22346 1.56161 1.12498 1.16661 0.84935 0.79139 0.81586 1.90830 1.18979 1.46183 1.83552 1.21298 0.91937 1.07334 0.96272 1.19346 0.97667 1.03186 0.90853 1.20282 0.93984 0.97695 0.95617 1.20716 1.00311 1.00949 0.93086 1.20620 0.94099 0.97826 0.99812 1.19867 0.97301 1.01519 0.91126 1.20643 0.92256 1.01044 0.95611 1.73431 1.24059 1.23429 0.90412 1.45809 1.15144 1.32602 1.06757 1.22790 0.91670 1.05166 0.88908 0.92892 0.91963 0.92875 0.90211 0.92826 0.92730 0.92992 0.91638 0.91639 0.93359 0.94998 0.80572 0.92894 0.76072 0.84836 0.85706 0.85506 0.85299 0.87907 0.86370 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.01 37.16 0.33 -1.43 16 2 C -0.10 -1.09 2.75 -90.62 -0.25 -1.33 16 3 C -0.14 -1.38 9.19 37.15 0.34 -1.04 16 4 C -0.12 -1.44 4.51 -26.73 -0.12 -1.56 16 5 C 0.13 1.86 2.13 -67.93 -0.14 1.72 16 6 H 0.10 1.66 5.45 -51.93 -0.28 1.38 16 7 C 0.15 2.53 5.45 -4.04 -0.02 2.51 16 8 N -0.76 -16.58 5.24 -59.91 -0.31 -16.89 16 9 C -0.25 -6.61 10.47 -15.06 -0.16 -6.77 16 10 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 11 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 12 N -0.93 -28.16 13.97 55.49 0.78 -27.38 16 13 Si 0.88 21.83 27.73 -169.99 -4.71 17.11 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 17 N -0.72 -10.54 4.29 -55.19 -0.24 -10.78 16 18 C 0.59 9.67 7.74 -12.97 -0.10 9.57 16 19 O -0.52 -9.63 15.82 5.16 0.08 -9.55 16 20 C -0.03 -0.54 6.95 -81.93 -0.57 -1.11 16 21 C -0.10 -1.57 6.30 -104.93 -0.66 -2.23 16 22 C -0.06 -0.76 9.82 -39.67 -0.39 -1.15 16 23 C -0.13 -1.42 9.92 -39.89 -0.40 -1.81 16 24 C -0.10 -1.01 9.89 -39.99 -0.40 -1.41 16 25 C -0.08 -0.90 10.09 -39.43 -0.40 -1.30 16 26 C 0.05 0.71 7.53 -83.14 -0.63 0.08 16 27 N -0.27 -4.10 11.88 33.21 0.39 -3.70 16 28 N -0.22 -3.08 3.71 -63.75 -0.24 -3.31 16 29 C 0.05 0.58 9.58 59.84 0.57 1.15 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.83 6.20 -51.92 -0.32 0.51 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.94 6.53 -51.93 -0.34 0.60 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.84 6.74 -51.93 -0.35 0.49 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.36 8.08 5.20 -40.82 -0.21 7.87 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.40 5.23 4.26 -40.82 -0.17 5.06 16 44 H 0.13 1.81 7.58 -52.49 -0.40 1.41 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.10 0.79 8.00 -51.93 -0.42 0.38 16 49 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.11 1.35 6.08 -51.93 -0.32 1.03 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -33.55 400.07 -8.77 -42.32 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.47 Total: 12.07 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.08 Total: -5.91 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.38 Total: -62.07 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.55 -8.77 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714934854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.254 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds