Wall clock time and date at job start Wed Apr 1 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47202 * 2 1 4 4 C 1.53005 * 109.47157 * 120.00197 * 2 1 3 5 5 C 1.52997 * 109.47129 * 62.68359 * 4 2 1 6 6 H 1.08998 * 109.47025 * 304.38622 * 5 4 2 7 7 C 1.52998 * 109.47308 * 64.38945 * 5 4 2 8 8 N 1.46496 * 109.47146 * 174.99507 * 7 5 4 9 9 C 1.36941 * 120.00016 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99557 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99936 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00098 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00360 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47269 * 89.99769 * 13 11 9 15 15 H 1.48502 * 109.47123 * 210.00391 * 13 11 9 16 16 H 1.48508 * 109.46846 * 330.00060 * 13 11 9 17 17 N 1.46507 * 109.46819 * 184.39053 * 5 4 2 18 18 C 1.34770 * 120.00154 * 88.48732 * 17 5 4 19 19 O 1.21731 * 120.00337 * 5.51405 * 18 17 5 20 20 C 1.46423 * 120.00295 * 185.51721 * 18 17 5 21 21 C 1.40109 * 126.86327 * 172.16262 * 20 18 17 22 22 C 1.40065 * 136.36090 * 0.02562 * 21 20 18 23 23 C 1.36079 * 119.46291 * 180.02562 * 22 21 20 24 24 C 1.39482 * 121.57102 * 359.96633 * 23 22 21 25 25 C 1.35818 * 121.84174 * 0.02562 * 24 23 22 26 26 C 1.40932 * 119.54465 * 359.97438 * 25 24 23 27 27 N 1.32146 * 135.41835 * 180.02562 * 26 25 24 28 28 N 1.28452 * 111.38670 * 179.71082 * 27 26 25 29 29 C 1.46496 * 124.15294 * 180.28233 * 28 27 26 30 30 H 1.08999 * 109.46866 * 64.32301 * 1 2 3 31 31 H 1.09007 * 109.46837 * 184.31813 * 1 2 3 32 32 H 1.08999 * 109.47157 * 304.31716 * 1 2 3 33 33 H 1.09002 * 109.47240 * 239.99432 * 2 1 3 34 34 H 1.09003 * 109.47445 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47066 * 300.00009 * 3 2 1 36 36 H 1.09006 * 109.47401 * 60.00093 * 3 2 1 37 37 H 1.09005 * 109.46800 * 302.68243 * 4 2 1 38 38 H 1.09000 * 109.47164 * 182.68511 * 4 2 1 39 39 H 1.08998 * 109.46962 * 294.99800 * 7 5 4 40 40 H 1.09002 * 109.47144 * 54.99729 * 7 5 4 41 41 H 0.97001 * 120.00092 * 0.02562 * 8 7 5 42 42 H 0.96996 * 120.00424 * 179.97438 * 12 11 9 43 43 H 0.97007 * 119.99600 * 268.48859 * 17 5 4 44 44 H 1.07995 * 120.26753 * 359.97061 * 22 21 20 45 45 H 1.07998 * 119.20816 * 179.97438 * 23 22 21 46 46 H 1.08001 * 119.07306 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.22666 * 180.02562 * 25 24 23 48 48 H 1.09005 * 109.47513 * 261.37073 * 29 28 27 49 49 H 1.09002 * 109.47705 * 21.36917 * 29 28 27 50 50 H 1.09003 * 109.47118 * 141.37404 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5859 -2.1820 1.2159 6 1 0.5016 -2.2231 1.1130 7 6 2.2383 -2.8919 0.0279 8 7 1.8993 -4.3166 0.0643 9 6 2.3738 -5.1583 -0.9061 10 1 2.9976 -4.7716 -1.6984 11 6 2.0523 -6.5082 -0.8719 12 7 2.5087 -7.3173 -1.8043 13 14 0.9728 -7.1769 0.4982 14 1 -0.4521 -7.1023 0.0869 15 1 1.3365 -8.5909 0.7696 16 1 1.1761 -6.3689 1.7276 17 7 1.9839 -2.8455 2.4600 18 6 1.1642 -2.8200 3.5294 19 8 0.0524 -2.3337 3.4327 20 6 1.6109 -3.3770 4.8078 21 6 0.9479 -3.2920 6.0392 22 6 -0.2434 -2.7273 6.5122 23 6 -0.5680 -2.8538 7.8276 24 6 0.2583 -3.5349 8.7215 25 6 1.4260 -4.1047 8.3260 26 6 1.8229 -4.0115 6.9769 27 7 2.8564 -4.4316 6.2687 28 7 2.7505 -4.0870 5.0358 29 6 3.7373 -4.4128 4.0032 30 1 -0.3633 0.4453 -0.9262 31 1 -0.3633 -1.0248 0.0774 32 1 -0.3633 0.5794 0.8488 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6379 -0.2360 2.1386 38 1 3.1290 -0.6798 1.2737 39 1 1.8730 -2.4551 -0.9015 40 1 3.3205 -2.7743 0.0840 41 1 1.3382 -4.6637 0.7754 42 1 2.2843 -8.2606 -1.7802 43 1 2.8375 -3.3033 2.5139 44 1 -0.8986 -2.1951 5.8386 45 1 -1.4873 -2.4164 8.1880 46 1 -0.0389 -3.6113 9.7570 47 1 2.0457 -4.6265 9.0403 48 1 4.3905 -3.5553 3.8412 49 1 4.3325 -5.2671 4.3258 50 1 3.2231 -4.6584 3.0739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714934854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:17 Heat of formation + Delta-G solvation = 52.877356 kcal Electronic energy + Delta-G solvation = -30990.077458 eV Core-core repulsion = 27018.553753 eV Total energy + Delta-G solvation = -3971.523705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.68851 -40.98169 -38.80003 -38.59412 -36.50952 -35.50905 -34.02647 -33.22123 -32.94217 -31.27647 -30.07914 -28.70672 -28.01484 -27.40987 -25.18580 -24.16769 -23.77824 -23.26075 -22.47184 -21.31556 -20.69775 -19.69447 -18.96224 -18.45909 -17.68716 -17.58276 -17.06425 -16.89511 -16.31348 -16.16063 -15.74253 -15.44086 -15.35527 -15.16659 -14.92479 -14.81658 -14.49522 -14.38200 -14.35810 -14.05003 -13.81493 -13.62125 -13.22443 -13.04247 -12.93796 -12.87688 -12.78542 -12.73823 -12.67692 -12.29987 -12.07993 -11.94759 -11.86499 -11.60462 -11.44102 -11.39571 -11.32831 -11.27794 -11.02934 -10.24931 -9.73931 -9.35795 -8.85071 -8.07655 -5.40157 -0.72808 0.46521 1.06610 1.11456 1.25289 1.31999 1.35579 1.85884 1.93979 2.38728 2.81292 2.96720 3.19395 3.25533 3.47383 3.73795 3.81971 3.85217 3.94677 3.96258 4.03235 4.06932 4.13698 4.18676 4.31808 4.35371 4.37290 4.51724 4.55526 4.73940 4.77562 4.80742 4.83705 4.91311 4.94252 5.02265 5.03746 5.07397 5.12868 5.30683 5.34554 5.34855 5.44316 5.48572 5.50336 5.53906 5.58699 5.73698 5.94294 6.16326 6.21514 6.66987 6.89390 7.01763 7.77207 7.94415 9.13644 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007985 B = 0.004329 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.941696 B = 6466.158445 C = 8809.515226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.109 4.109 5 C 0.134 3.866 6 H 0.080 0.920 7 C 0.147 3.853 8 N -0.758 5.758 9 C -0.224 4.224 10 H 0.070 0.930 11 C -0.048 4.048 12 N -0.976 5.976 13 Si 0.936 3.064 14 H -0.289 1.289 15 H -0.293 1.293 16 H -0.264 1.264 17 N -0.713 5.713 18 C 0.593 3.407 19 O -0.552 6.552 20 C -0.066 4.066 21 C -0.119 4.119 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.094 4.094 25 C -0.085 4.085 26 C 0.027 3.973 27 N -0.282 5.282 28 N -0.215 5.215 29 C 0.045 3.955 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.360 0.640 42 H 0.258 0.742 43 H 0.407 0.593 44 H 0.123 0.877 45 H 0.157 0.843 46 H 0.169 0.831 47 H 0.152 0.848 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 14.951 18.527 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.197 4.197 4 C -0.148 4.148 5 C 0.030 3.970 6 H 0.098 0.902 7 C 0.021 3.979 8 N -0.404 5.404 9 C -0.355 4.355 10 H 0.088 0.912 11 C -0.241 4.241 12 N -0.627 5.627 13 Si 0.766 3.234 14 H -0.216 1.216 15 H -0.220 1.220 16 H -0.190 1.190 17 N -0.370 5.370 18 C 0.379 3.621 19 O -0.429 6.429 20 C -0.199 4.199 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.116 4.116 25 C -0.105 4.105 26 C -0.116 4.116 27 N -0.122 5.122 28 N -0.001 5.001 29 C -0.093 4.093 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.193 0.807 42 H 0.067 0.933 43 H 0.249 0.751 44 H 0.141 0.859 45 H 0.174 0.826 46 H 0.186 0.814 47 H 0.170 0.830 48 H 0.151 0.849 49 H 0.153 0.847 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.650 14.629 18.185 23.348 hybrid contribution -0.988 -0.917 0.000 1.348 sum -0.337 13.712 18.185 22.778 Atomic orbital electron populations 1.21891 0.95683 1.01176 1.01900 1.21137 0.95689 0.97131 0.97529 1.21778 1.01317 0.94590 1.02055 1.21894 1.01889 0.92133 0.98878 1.21450 1.00665 0.92821 0.82055 0.90215 1.21195 0.98299 0.82558 0.95819 1.42754 1.61823 1.05158 1.30629 1.19036 1.23866 0.89334 1.03291 0.91177 1.25225 1.02089 0.96653 1.00100 1.69822 1.51446 1.04442 1.36950 0.85723 0.79316 0.77692 0.80692 1.21617 1.21953 1.18964 1.46507 1.22460 1.55991 1.12008 1.16767 0.84566 0.78703 0.82057 1.90800 1.20234 1.47743 1.84110 1.21216 0.93269 1.09281 0.96143 1.19727 0.98449 1.03470 0.91180 1.20385 0.94106 0.99650 0.97032 1.21175 1.01010 0.98896 0.91909 1.21100 0.92912 0.96003 1.01548 1.20312 0.98255 1.01719 0.90234 1.21159 0.92168 1.01463 0.96844 1.73370 1.24423 1.23584 0.90815 1.46011 1.15109 1.32006 1.06961 1.23059 0.91397 1.07274 0.87611 0.91836 0.94044 0.92841 0.90606 0.91914 0.91928 0.92755 0.92084 0.89889 0.93063 0.93242 0.80705 0.93306 0.75114 0.85922 0.82579 0.81357 0.82999 0.84937 0.84744 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.01 71.98 0.65 -2.79 16 2 C -0.10 -2.03 2.75 -10.79 -0.03 -2.06 16 3 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 4 C -0.11 -2.50 4.51 30.59 0.14 -2.36 16 5 C 0.13 3.90 2.13 44.99 0.10 4.00 16 6 H 0.08 2.70 5.45 -2.39 -0.01 2.69 16 7 C 0.15 4.91 5.45 86.38 0.47 5.38 16 8 N -0.76 -32.87 5.24 -343.47 -1.80 -34.66 16 9 C -0.22 -11.96 10.47 84.03 0.88 -11.08 16 10 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 11 C -0.05 -2.74 5.50 84.86 0.47 -2.28 16 12 N -0.98 -60.39 13.97 21.65 0.30 -60.09 16 13 Si 0.94 45.59 27.73 68.60 1.90 47.50 16 14 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 15 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 16 H -0.26 -11.87 6.52 99.48 0.65 -11.22 16 17 N -0.71 -20.60 4.29 -446.73 -1.92 -22.51 16 18 C 0.59 19.61 7.74 86.38 0.67 20.28 16 19 O -0.55 -21.03 15.82 -4.45 -0.07 -21.10 16 20 C -0.07 -2.07 6.95 41.05 0.29 -1.79 16 21 C -0.12 -3.69 6.30 -20.07 -0.13 -3.82 16 22 C -0.09 -2.46 9.82 22.21 0.22 -2.24 16 23 C -0.11 -2.11 9.92 22.07 0.22 -1.89 16 24 C -0.09 -1.53 9.89 22.01 0.22 -1.32 16 25 C -0.08 -1.75 10.09 22.37 0.23 -1.53 16 26 C 0.03 0.75 7.53 42.07 0.32 1.07 16 27 N -0.28 -8.18 11.88 -48.86 -0.58 -8.76 16 28 N -0.21 -5.94 3.71 -355.61 -1.32 -7.26 16 29 C 0.05 0.91 9.58 127.77 1.22 2.13 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.12 6.20 -2.38 -0.01 1.10 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.68 6.53 -2.39 -0.02 1.66 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.73 6.74 -2.39 -0.02 1.71 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.36 15.89 5.20 -92.71 -0.48 15.41 16 42 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.41 10.30 4.26 -92.70 -0.39 9.90 16 44 H 0.12 3.45 7.58 -2.91 -0.02 3.43 16 45 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.13 1.80 8.00 -2.38 -0.02 1.78 16 49 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.10 2.26 6.08 -2.39 -0.01 2.25 16 Total: -1.00 -74.41 400.07 3.13 -71.28 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.03 Total: 37.60 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.58 Total: -1.99 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -5.31 Total: -133.29 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.07 Total: -21.10 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.50 kcal Total: -74.41 3.13 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714934854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.157 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds