Wall clock time and date at job start Wed Apr 1 2020 03:24:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30093 * 124.97780 * 2 1
4 4 C 1.35849 * 109.53388 * 180.02562 * 3 2 1
5 5 C 1.39719 * 133.50614 * 180.02562 * 4 3 2
6 6 C 1.37839 * 120.10953 * 179.97438 * 5 4 3
7 7 C 1.38337 * 120.72364 * 359.78752 * 6 5 4
8 8 C 1.39396 * 120.28194 * 0.47379 * 7 6 5
9 9 C 1.47526 * 120.25139 * 179.78905 * 8 7 6
10 10 O 1.21593 * 120.00209 * 179.71813 * 9 8 7
11 11 N 1.34777 * 119.99471 * 359.97438 * 9 8 7
12 12 C 1.46505 * 119.99724 * 179.72702 * 11 9 8
13 13 H 1.09002 * 109.47181 * 34.99973 * 12 11 9
14 14 C 1.52995 * 109.47024 * 155.00353 * 12 11 9
15 15 N 1.46500 * 109.47361 * 304.99744 * 14 12 11
16 16 C 1.36931 * 120.00091 * 180.02562 * 15 14 12
17 17 H 1.07995 * 120.00634 * 359.97438 * 16 15 14
18 18 C 1.38817 * 119.99940 * 180.02562 * 16 15 14
19 19 N 1.31629 * 119.99939 * 359.97438 * 18 16 15
20 20 Si 1.86795 * 120.00267 * 179.97438 * 18 16 15
21 21 H 1.48499 * 109.46958 * 0.02562 * 20 18 16
22 22 H 1.48508 * 109.47071 * 119.99632 * 20 18 16
23 23 H 1.48496 * 109.47061 * 239.99789 * 20 18 16
24 24 C 1.53008 * 109.46864 * 275.00347 * 12 11 9
25 25 C 1.52990 * 109.47287 * 65.00230 * 24 12 11
26 26 C 1.52998 * 109.47503 * 64.99709 * 25 24 12
27 27 C 1.52997 * 109.47296 * 184.99947 * 25 24 12
28 28 C 1.40195 * 119.50395 * 359.50585 * 8 7 6
29 29 N 1.36115 * 124.97956 * 180.02562 * 2 1 3
30 30 H 0.96998 * 126.31299 * 359.96559 * 29 2 1
31 31 H 1.08995 * 109.47132 * 269.99418 * 1 2 3
32 32 H 1.09001 * 109.47254 * 29.99794 * 1 2 3
33 33 H 1.09004 * 109.46998 * 149.99347 * 1 2 3
34 34 H 1.07999 * 119.94662 * 0.02562 * 5 4 3
35 35 H 1.07994 * 119.64260 * 180.02562 * 6 5 4
36 36 H 1.07996 * 119.85738 * 180.23234 * 7 6 5
37 37 H 0.97000 * 120.00483 * 359.73134 * 11 9 8
38 38 H 1.08997 * 109.47185 * 65.00115 * 14 12 11
39 39 H 1.09002 * 109.47351 * 184.99998 * 14 12 11
40 40 H 0.97001 * 119.99299 * 0.02562 * 15 14 12
41 41 H 0.96999 * 120.00064 * 180.02562 * 19 18 16
42 42 H 1.09005 * 109.46517 * 184.99989 * 24 12 11
43 43 H 1.09001 * 109.46674 * 304.99544 * 24 12 11
44 44 H 1.09002 * 109.47328 * 304.99879 * 25 24 12
45 45 H 1.08998 * 109.47615 * 179.97438 * 26 25 24
46 46 H 1.08998 * 109.47045 * 300.00024 * 26 25 24
47 47 H 1.09006 * 109.47095 * 60.00052 * 26 25 24
48 48 H 1.08999 * 109.47283 * 59.99540 * 27 25 24
49 49 H 1.09002 * 109.47711 * 179.97438 * 27 25 24
50 50 H 1.09002 * 109.46877 * 300.00208 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2528 1.0659 0.0000
4 6 3.5622 0.7042 -0.0006
5 6 4.7592 1.4248 -0.0004
6 6 5.9666 0.7599 -0.0006
7 6 6.0121 -0.6227 0.0034
8 6 4.8321 -1.3648 -0.0022
9 6 4.8814 -2.8392 -0.0027
10 8 3.8493 -3.4821 -0.0024
11 7 6.0705 -3.4736 0.0019
12 6 6.1195 -4.9378 0.0075
13 1 5.2914 -5.3314 -0.5820
14 6 7.4443 -5.4061 -0.5979
15 7 7.6056 -4.8214 -1.9314
16 6 8.7237 -5.1008 -2.6709
17 1 9.4869 -5.7519 -2.2710
18 6 8.8768 -4.5464 -3.9343
19 7 7.9469 -3.7524 -4.4216
20 14 10.4023 -4.9270 -4.9428
21 1 11.2883 -5.8388 -4.1753
22 1 10.0040 -5.5800 -6.2157
23 1 11.1271 -3.6653 -5.2393
24 6 6.0082 -5.4463 1.4463
25 6 4.6325 -5.0853 2.0098
26 6 3.5496 -5.8345 1.2309
27 6 4.5658 -5.4821 3.4859
28 6 3.5981 -0.6995 -0.0015
29 7 2.2874 -1.1153 -0.0005
30 1 1.9762 -2.0340 -0.0004
31 1 -0.3633 -0.0001 1.0276
32 1 -0.3634 0.8900 -0.5138
33 1 -0.3633 -0.8900 -0.5140
34 1 4.7384 2.5046 0.0008
35 1 6.8873 1.3245 0.0000
36 1 6.9659 -1.1292 0.0070
37 1 6.8939 -2.9608 0.0015
38 1 8.2683 -5.0876 0.0406
39 1 7.4442 -6.4933 -0.6755
40 1 6.9203 -4.2363 -2.2905
41 1 8.0537 -3.3652 -5.3045
42 1 6.1336 -6.5290 1.4597
43 1 6.7838 -4.9831 2.0563
44 1 4.4713 -4.0114 1.9147
45 1 2.5694 -5.5776 1.6327
46 1 3.5970 -5.5517 0.1793
47 1 3.7107 -6.9083 1.3260
48 1 5.3373 -4.9484 4.0409
49 1 3.5858 -5.2245 3.8876
50 1 4.7271 -6.5559 3.5811
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714935100.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:24:16
Heat of formation + Delta-G solvation = 29.746897 kcal
Electronic energy + Delta-G solvation = -30950.855036 eV
Core-core repulsion = 26978.328319 eV
Total energy + Delta-G solvation = -3972.526717 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.23742 -39.93637 -37.40159 -36.57731 -35.00413 -33.53070 -33.07797 -31.61978
-31.26859 -30.16639 -28.86615 -27.70504 -26.94865 -25.60171 -23.87596 -22.77521
-22.35159 -21.10758 -20.81834 -20.18792 -19.73062 -17.96898 -17.57945 -17.09762
-16.40204 -15.86066 -15.73187 -15.45773 -15.12203 -14.66125 -14.25431 -14.13421
-13.97451 -13.72613 -13.50380 -13.32105 -13.12788 -13.04995 -12.91871 -12.88084
-12.19024 -12.12696 -12.03539 -11.98008 -11.91549 -11.59546 -11.53868 -11.09146
-11.00928 -10.86199 -10.68352 -10.58289 -10.30476 -10.26524 -10.23640 -10.01207
-9.75916 -9.55030 -8.95898 -8.71344 -8.37836 -8.15428 -6.99894 -5.81197
-3.11500 0.58352 1.47767 2.45989 2.90027 3.21490 3.39333 3.42407
3.45909 3.48055 3.94259 3.99485 4.52454 4.57959 4.84172 4.89832
4.94515 5.00086 5.11786 5.13664 5.15324 5.19949 5.35173 5.37727
5.49507 5.55717 5.57962 5.60545 5.66856 5.71224 5.81509 5.90111
5.94166 5.98575 6.04802 6.07497 6.15886 6.23107 6.25805 6.36831
6.38750 6.40616 6.43439 6.61241 6.62204 6.74497 6.77828 6.90479
7.33692 7.65419 7.79020 7.81094 8.36057 8.45202 9.48242 10.03544
10.38887 11.40834
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.008826 B = 0.003699 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3171.824269 B = 7568.326273 C = 9566.657816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.276 3.724
3 N -0.493 5.493
4 C 0.033 3.967
5 C -0.041 4.041
6 C -0.136 4.136
7 C -0.057 4.057
8 C -0.125 4.125
9 C 0.562 3.438
10 O -0.549 6.549
11 N -0.700 5.700
12 C 0.136 3.864
13 H 0.092 0.908
14 C 0.143 3.857
15 N -0.731 5.731
16 C -0.244 4.244
17 H 0.071 0.929
18 C -0.011 4.011
19 N -0.929 5.929
20 Si 0.906 3.094
21 H -0.280 1.280
22 H -0.292 1.292
23 H -0.291 1.291
24 C -0.122 4.122
25 C -0.092 4.092
26 C -0.137 4.137
27 C -0.146 4.146
28 C 0.103 3.897
29 N -0.580 5.580
30 H 0.433 0.567
31 H 0.087 0.913
32 H 0.095 0.905
33 H 0.080 0.920
34 H 0.132 0.868
35 H 0.136 0.864
36 H 0.137 0.863
37 H 0.404 0.596
38 H 0.024 0.976
39 H 0.033 0.967
40 H 0.386 0.614
41 H 0.255 0.745
42 H 0.071 0.929
43 H 0.062 0.938
44 H 0.074 0.926
45 H 0.040 0.960
46 H 0.076 0.924
47 H 0.038 0.962
48 H 0.048 0.952
49 H 0.047 0.953
50 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.237 5.766 14.682 19.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.009 3.991
3 N -0.215 5.215
4 C -0.085 4.085
5 C -0.060 4.060
6 C -0.156 4.156
7 C -0.077 4.077
8 C -0.131 4.131
9 C 0.351 3.649
10 O -0.430 6.430
11 N -0.350 5.350
12 C 0.032 3.968
13 H 0.110 0.890
14 C 0.015 3.985
15 N -0.376 5.376
16 C -0.375 4.375
17 H 0.089 0.911
18 C -0.207 4.207
19 N -0.577 5.577
20 Si 0.737 3.263
21 H -0.206 1.206
22 H -0.219 1.219
23 H -0.218 1.218
24 C -0.161 4.161
25 C -0.111 4.111
26 C -0.194 4.194
27 C -0.203 4.203
28 C -0.010 4.010
29 N -0.192 5.192
30 H 0.274 0.726
31 H 0.106 0.894
32 H 0.114 0.886
33 H 0.099 0.901
34 H 0.150 0.850
35 H 0.154 0.846
36 H 0.155 0.845
37 H 0.240 0.760
38 H 0.042 0.958
39 H 0.051 0.949
40 H 0.220 0.780
41 H 0.065 0.935
42 H 0.089 0.911
43 H 0.081 0.919
44 H 0.092 0.908
45 H 0.060 0.940
46 H 0.095 0.905
47 H 0.057 0.943
48 H 0.067 0.933
49 H 0.066 0.934
50 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -12.047 6.074 14.626 19.898
hybrid contribution 1.298 -1.053 -0.849 1.874
sum -10.749 5.022 13.777 18.182
Atomic orbital electron populations
1.20362 0.84225 1.04738 1.04138 1.23657 0.95774 0.81202 0.98485
1.70437 1.00587 1.27570 1.22867 1.19027 0.92263 0.89987 1.07204
1.20415 0.89040 0.99839 0.96755 1.20838 0.97637 0.93953 1.03213
1.21234 0.96668 0.94263 0.95581 1.18935 0.90813 0.92951 1.10417
1.18025 0.84214 0.86659 0.76052 1.90659 1.33544 1.67249 1.51552
1.45859 1.08076 1.07753 1.73275 1.21409 1.00414 0.79025 0.95965
0.89033 1.20971 0.92572 0.96770 0.88151 1.42355 1.24097 1.57628
1.13532 1.19244 0.97281 1.23955 0.96987 0.91108 1.24751 0.98329
0.99976 0.97649 1.69682 1.34075 1.35797 1.18167 0.86134 0.82448
0.77418 0.80256 1.20562 1.21881 1.21827 1.22018 0.97166 1.01180
0.95713 1.21129 0.94866 1.01264 0.93802 1.21827 0.97246 0.98129
1.02227 1.21867 1.00859 1.00960 0.96659 1.18536 0.84861 0.94482
1.03167 1.43100 1.04589 1.10616 1.60877 0.72583 0.89433 0.88579
0.90070 0.85024 0.84577 0.84548 0.76027 0.95814 0.94884 0.77996
0.93511 0.91083 0.91925 0.90795 0.94045 0.90497 0.94271 0.93312
0.93361 0.93082
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.55 10.51 36.01 0.38 -0.17 16
2 C 0.28 3.36 8.08 -154.76 -1.25 2.11 16
3 N -0.49 -7.19 11.28 -8.23 -0.09 -7.29 16
4 C 0.03 0.50 7.22 -84.71 -0.61 -0.11 16
5 C -0.04 -0.52 10.09 -39.17 -0.40 -0.91 16
6 C -0.14 -1.59 9.99 -39.69 -0.40 -1.99 16
7 C -0.06 -0.75 9.53 -39.11 -0.37 -1.12 16
8 C -0.13 -1.88 5.88 -104.95 -0.62 -2.49 16
9 C 0.56 8.91 6.32 -12.47 -0.08 8.83 16
10 O -0.55 -9.11 10.24 5.28 0.05 -9.05 16
11 N -0.70 -10.74 4.42 -54.84 -0.24 -10.98 16
12 C 0.14 2.16 2.33 -67.93 -0.16 2.00 16
13 H 0.09 1.64 5.92 -51.93 -0.31 1.33 16
14 C 0.14 2.69 5.82 -4.04 -0.02 2.66 16
15 N -0.73 -17.62 5.43 -59.91 -0.33 -17.94 16
16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16
17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
18 C -0.01 -0.30 5.50 -17.42 -0.10 -0.40 16
19 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16
20 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16
21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
24 C -0.12 -1.61 4.36 -26.73 -0.12 -1.72 16
25 C -0.09 -1.20 2.38 -90.63 -0.22 -1.42 16
26 C -0.14 -1.85 8.03 37.16 0.30 -1.55 16
27 C -0.15 -1.64 9.19 37.16 0.34 -1.29 16
28 C 0.10 1.57 6.88 -83.76 -0.58 0.99 16
29 N -0.58 -7.67 6.00 -7.81 -0.05 -7.72 16
30 H 0.43 5.29 7.72 -40.82 -0.32 4.98 16
31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16
35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16
36 H 0.14 1.60 6.39 -52.49 -0.34 1.26 16
37 H 0.40 5.96 6.63 -40.82 -0.27 5.69 16
38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.39 10.00 7.33 -40.82 -0.30 9.70 16
41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
44 H 0.07 1.09 5.19 -51.93 -0.27 0.82 16
45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
46 H 0.08 1.20 4.75 -51.93 -0.25 0.95 16
47 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
50 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
LS Contribution 397.31 15.07 5.99 5.99
Total: -1.00 -32.58 397.31 -10.52 -43.10
By element:
Atomic # 1 Polarization: 24.64 SS G_CDS: -7.51 Total: 17.14 kcal
Atomic # 6 Polarization: 0.72 SS G_CDS: -4.04 Total: -3.32 kcal
Atomic # 7 Polarization: -70.84 SS G_CDS: 0.02 Total: -70.82 kcal
Atomic # 8 Polarization: -9.11 SS G_CDS: 0.05 Total: -9.05 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -32.58 -10.52 -43.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714935100.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.847 kcal
(2) G-P(sol) polarization free energy of solvation -32.585 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds