Wall clock time and date at job start Wed Apr 1 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30093 * 124.97780 * 2 1 4 4 C 1.35849 * 109.53388 * 180.02562 * 3 2 1 5 5 C 1.39719 * 133.50614 * 180.02562 * 4 3 2 6 6 C 1.37839 * 120.10953 * 179.97438 * 5 4 3 7 7 C 1.38337 * 120.72364 * 359.78752 * 6 5 4 8 8 C 1.39396 * 120.28194 * 0.47379 * 7 6 5 9 9 C 1.47526 * 120.25139 * 179.78905 * 8 7 6 10 10 O 1.21593 * 120.00209 * 179.71813 * 9 8 7 11 11 N 1.34777 * 119.99471 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72702 * 11 9 8 13 13 H 1.09002 * 109.47181 * 34.99973 * 12 11 9 14 14 C 1.52995 * 109.47024 * 155.00353 * 12 11 9 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 12 11 16 16 C 1.36931 * 120.00091 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00634 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99940 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99939 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00267 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46958 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47071 * 119.99632 * 20 18 16 23 23 H 1.48496 * 109.47061 * 239.99789 * 20 18 16 24 24 C 1.53008 * 109.46864 * 275.00347 * 12 11 9 25 25 C 1.52990 * 109.47287 * 65.00230 * 24 12 11 26 26 C 1.52998 * 109.47503 * 64.99709 * 25 24 12 27 27 C 1.52997 * 109.47296 * 184.99947 * 25 24 12 28 28 C 1.40195 * 119.50395 * 359.50585 * 8 7 6 29 29 N 1.36115 * 124.97956 * 180.02562 * 2 1 3 30 30 H 0.96998 * 126.31299 * 359.96559 * 29 2 1 31 31 H 1.08995 * 109.47132 * 269.99418 * 1 2 3 32 32 H 1.09001 * 109.47254 * 29.99794 * 1 2 3 33 33 H 1.09004 * 109.46998 * 149.99347 * 1 2 3 34 34 H 1.07999 * 119.94662 * 0.02562 * 5 4 3 35 35 H 1.07994 * 119.64260 * 180.02562 * 6 5 4 36 36 H 1.07996 * 119.85738 * 180.23234 * 7 6 5 37 37 H 0.97000 * 120.00483 * 359.73134 * 11 9 8 38 38 H 1.08997 * 109.47185 * 65.00115 * 14 12 11 39 39 H 1.09002 * 109.47351 * 184.99998 * 14 12 11 40 40 H 0.97001 * 119.99299 * 0.02562 * 15 14 12 41 41 H 0.96999 * 120.00064 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.46517 * 184.99989 * 24 12 11 43 43 H 1.09001 * 109.46674 * 304.99544 * 24 12 11 44 44 H 1.09002 * 109.47328 * 304.99879 * 25 24 12 45 45 H 1.08998 * 109.47615 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47045 * 300.00024 * 26 25 24 47 47 H 1.09006 * 109.47095 * 60.00052 * 26 25 24 48 48 H 1.08999 * 109.47283 * 59.99540 * 27 25 24 49 49 H 1.09002 * 109.47711 * 179.97438 * 27 25 24 50 50 H 1.09002 * 109.46877 * 300.00208 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5622 0.7042 -0.0006 5 6 4.7592 1.4248 -0.0004 6 6 5.9666 0.7599 -0.0006 7 6 6.0121 -0.6227 0.0034 8 6 4.8321 -1.3648 -0.0022 9 6 4.8814 -2.8392 -0.0027 10 8 3.8493 -3.4821 -0.0024 11 7 6.0705 -3.4736 0.0019 12 6 6.1195 -4.9378 0.0075 13 1 5.2914 -5.3314 -0.5820 14 6 7.4443 -5.4061 -0.5979 15 7 7.6056 -4.8214 -1.9314 16 6 8.7237 -5.1008 -2.6709 17 1 9.4869 -5.7519 -2.2710 18 6 8.8768 -4.5464 -3.9343 19 7 7.9469 -3.7524 -4.4216 20 14 10.4023 -4.9270 -4.9428 21 1 11.2883 -5.8388 -4.1753 22 1 10.0040 -5.5800 -6.2157 23 1 11.1271 -3.6653 -5.2393 24 6 6.0082 -5.4463 1.4463 25 6 4.6325 -5.0853 2.0098 26 6 3.5496 -5.8345 1.2309 27 6 4.5658 -5.4821 3.4859 28 6 3.5981 -0.6995 -0.0015 29 7 2.2874 -1.1153 -0.0005 30 1 1.9762 -2.0340 -0.0004 31 1 -0.3633 -0.0001 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5140 34 1 4.7384 2.5046 0.0008 35 1 6.8873 1.3245 0.0000 36 1 6.9659 -1.1292 0.0070 37 1 6.8939 -2.9608 0.0015 38 1 8.2683 -5.0876 0.0406 39 1 7.4442 -6.4933 -0.6755 40 1 6.9203 -4.2363 -2.2905 41 1 8.0537 -3.3652 -5.3045 42 1 6.1336 -6.5290 1.4597 43 1 6.7838 -4.9831 2.0563 44 1 4.4713 -4.0114 1.9147 45 1 2.5694 -5.5776 1.6327 46 1 3.5970 -5.5517 0.1793 47 1 3.7107 -6.9083 1.3260 48 1 5.3373 -4.9484 4.0409 49 1 3.5858 -5.2245 3.8876 50 1 4.7271 -6.5559 3.5811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714935100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:15 Heat of formation + Delta-G solvation = 9.603601 kcal Electronic energy + Delta-G solvation = -30951.728515 eV Core-core repulsion = 26978.328319 eV Total energy + Delta-G solvation = -3973.400196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.24088 -41.14723 -38.46520 -37.79288 -36.45268 -35.06532 -34.12170 -33.11102 -32.25569 -31.47622 -30.15223 -28.57957 -27.96453 -27.19045 -25.11986 -24.42119 -23.37726 -22.31528 -21.87884 -21.39451 -20.82069 -19.38460 -18.78659 -18.57495 -17.51212 -17.07791 -16.96579 -16.59661 -16.36492 -16.06822 -15.45577 -15.34568 -15.20582 -15.13642 -14.83740 -14.52173 -14.33794 -14.18688 -13.87662 -13.62979 -13.51122 -13.26286 -13.05986 -13.00363 -12.96272 -12.84894 -12.81931 -12.55481 -12.50508 -12.33079 -12.05185 -11.89239 -11.73224 -11.64677 -11.40165 -11.32959 -11.24916 -10.98497 -10.72516 -9.95486 -9.39397 -9.19091 -9.00399 -7.93647 -5.23143 -0.44829 0.44800 1.44016 1.48450 1.49288 1.58920 1.94323 2.08917 2.21728 2.56448 2.87201 3.13050 3.40919 3.54602 3.66460 3.85890 3.92831 3.99619 4.07825 4.20470 4.23358 4.24096 4.34335 4.39042 4.41398 4.57170 4.66253 4.68765 4.78408 4.80311 4.86797 4.88525 4.91848 4.94764 4.99074 5.03596 5.08046 5.15333 5.21868 5.26103 5.37331 5.38538 5.40554 5.51946 5.56381 5.60019 5.65580 5.79395 6.26634 6.37101 6.58670 6.79550 7.23320 7.34462 8.07976 8.31547 9.29208 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.003699 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.824269 B = 7568.326273 C = 9566.657816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.279 3.721 3 N -0.521 5.521 4 C 0.011 3.989 5 C -0.044 4.044 6 C -0.130 4.130 7 C -0.061 4.061 8 C -0.147 4.147 9 C 0.559 3.441 10 O -0.562 6.562 11 N -0.698 5.698 12 C 0.148 3.852 13 H 0.068 0.932 14 C 0.144 3.856 15 N -0.742 5.742 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.299 1.299 23 H -0.293 1.293 24 C -0.113 4.113 25 C -0.088 4.088 26 C -0.132 4.132 27 C -0.141 4.141 28 C 0.079 3.921 29 N -0.583 5.583 30 H 0.434 0.566 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.406 0.594 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 5.608 16.135 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.012 3.988 3 N -0.243 5.243 4 C -0.107 4.107 5 C -0.064 4.064 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.153 4.153 9 C 0.348 3.652 10 O -0.443 6.443 11 N -0.348 5.348 12 C 0.043 3.957 13 H 0.086 0.914 14 C 0.017 3.983 15 N -0.385 5.385 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.227 1.227 23 H -0.220 1.220 24 C -0.152 4.152 25 C -0.107 4.107 26 C -0.189 4.189 27 C -0.198 4.198 28 C -0.035 4.035 29 N -0.195 5.195 30 H 0.276 0.724 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.186 0.814 36 H 0.165 0.835 37 H 0.243 0.757 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.471 5.888 16.127 20.648 hybrid contribution 1.064 -1.015 -1.249 1.929 sum -10.407 4.874 14.879 18.800 Atomic orbital electron populations 1.20600 0.80801 1.06034 1.05791 1.24592 0.97508 0.80345 0.96309 1.70451 1.00701 1.28596 1.24594 1.19471 0.93205 0.90247 1.07766 1.20781 0.88658 1.00992 0.95956 1.21195 0.98636 0.93473 1.01724 1.21489 0.96493 0.95105 0.94994 1.19006 0.91655 0.92473 1.12142 1.18230 0.84068 0.87202 0.75742 1.90644 1.33918 1.67650 1.52135 1.45792 1.08150 1.07492 1.73397 1.21211 0.97836 0.79394 0.97243 0.91385 1.21125 0.94527 0.96597 0.86025 1.42523 1.23059 1.57650 1.15278 1.19648 0.97825 1.22714 0.97096 0.90327 1.25514 1.01186 1.00657 0.99072 1.69841 1.36128 1.37576 1.18247 0.85121 0.79398 0.77117 0.78380 1.18888 1.22656 1.22046 1.21958 0.97731 1.01808 0.93699 1.21053 0.94415 1.00055 0.95167 1.21748 0.97686 0.98757 1.00692 1.21807 1.01367 1.01696 0.94933 1.18795 0.85583 0.95001 1.04144 1.43187 1.04298 1.11001 1.60986 0.72421 0.87438 0.87692 0.88277 0.82918 0.81365 0.83511 0.75741 0.94281 0.94562 0.79411 0.94227 0.89941 0.90688 0.92638 0.93862 0.93035 0.93241 0.92603 0.93060 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.28 6.76 8.08 137.90 1.11 7.87 16 3 N -0.52 -15.24 11.28 -179.96 -2.03 -17.27 16 4 C 0.01 0.33 7.22 39.41 0.28 0.61 16 5 C -0.04 -1.09 10.09 22.53 0.23 -0.87 16 6 C -0.13 -2.90 9.99 22.20 0.22 -2.68 16 7 C -0.06 -1.58 9.53 22.57 0.22 -1.37 16 8 C -0.15 -4.51 5.88 -20.07 -0.12 -4.63 16 9 C 0.56 18.21 6.32 86.69 0.55 18.76 16 10 O -0.56 -19.34 10.24 -4.01 -0.04 -19.38 16 11 N -0.70 -21.63 4.42 -445.69 -1.97 -23.60 16 12 C 0.15 4.66 2.33 44.99 0.10 4.77 16 13 H 0.07 2.50 5.92 -2.39 -0.01 2.49 16 14 C 0.14 5.28 5.82 86.38 0.50 5.78 16 15 N -0.74 -35.79 5.43 -343.46 -1.87 -37.65 16 16 C -0.24 -12.90 9.99 84.04 0.84 -12.06 16 17 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 19 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 20 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 C -0.11 -2.82 4.36 30.59 0.13 -2.69 16 25 C -0.09 -2.22 2.38 -10.80 -0.03 -2.25 16 26 C -0.13 -3.50 8.03 71.98 0.58 -2.93 16 27 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 28 C 0.08 2.44 6.88 39.26 0.27 2.71 16 29 N -0.58 -15.78 6.00 -178.61 -1.07 -16.85 16 30 H 0.43 11.01 7.72 -92.71 -0.72 10.30 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.15 3.38 6.39 -2.91 -0.02 3.36 16 37 H 0.41 11.99 6.63 -92.71 -0.61 11.38 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.37 19.76 7.33 -92.71 -0.68 19.08 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.63 5.19 -2.39 -0.01 1.61 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.65 4.75 -2.39 -0.01 1.63 16 47 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.95 397.31 1.08 -69.86 By element: Atomic # 1 Polarization: 51.75 SS G_CDS: -1.02 Total: 50.73 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.77 Total: 5.07 kcal Atomic # 7 Polarization: -146.89 SS G_CDS: -6.66 Total: -153.54 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.04 Total: -19.38 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.95 1.08 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714935100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.466 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds