Wall clock time and date at job start Wed Apr 1 2020 03:24:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30093 * 124.97780 * 2 1
4 4 C 1.35849 * 109.53388 * 180.02562 * 3 2 1
5 5 C 1.39719 * 133.50614 * 180.02562 * 4 3 2
6 6 C 1.37839 * 120.10953 * 179.97438 * 5 4 3
7 7 C 1.38337 * 120.72364 * 359.78752 * 6 5 4
8 8 C 1.39396 * 120.28194 * 0.47379 * 7 6 5
9 9 C 1.47526 * 120.25139 * 179.78905 * 8 7 6
10 10 O 1.21593 * 120.00209 * 179.71813 * 9 8 7
11 11 N 1.34777 * 119.99471 * 359.97438 * 9 8 7
12 12 C 1.46505 * 119.99724 * 179.72702 * 11 9 8
13 13 H 1.09002 * 109.47181 * 34.99973 * 12 11 9
14 14 C 1.52995 * 109.47024 * 155.00353 * 12 11 9
15 15 N 1.46500 * 109.47361 * 304.99744 * 14 12 11
16 16 C 1.36931 * 120.00091 * 180.02562 * 15 14 12
17 17 H 1.07995 * 120.00634 * 359.97438 * 16 15 14
18 18 C 1.38817 * 119.99940 * 180.02562 * 16 15 14
19 19 N 1.31629 * 119.99939 * 359.97438 * 18 16 15
20 20 Si 1.86795 * 120.00267 * 179.97438 * 18 16 15
21 21 H 1.48499 * 109.46958 * 0.02562 * 20 18 16
22 22 H 1.48508 * 109.47071 * 119.99632 * 20 18 16
23 23 H 1.48496 * 109.47061 * 239.99789 * 20 18 16
24 24 C 1.53008 * 109.46864 * 275.00347 * 12 11 9
25 25 C 1.52990 * 109.47287 * 65.00230 * 24 12 11
26 26 C 1.52998 * 109.47503 * 64.99709 * 25 24 12
27 27 C 1.52997 * 109.47296 * 184.99947 * 25 24 12
28 28 C 1.40195 * 119.50395 * 359.50585 * 8 7 6
29 29 N 1.36115 * 124.97956 * 180.02562 * 2 1 3
30 30 H 0.96998 * 126.31299 * 359.96559 * 29 2 1
31 31 H 1.08995 * 109.47132 * 269.99418 * 1 2 3
32 32 H 1.09001 * 109.47254 * 29.99794 * 1 2 3
33 33 H 1.09004 * 109.46998 * 149.99347 * 1 2 3
34 34 H 1.07999 * 119.94662 * 0.02562 * 5 4 3
35 35 H 1.07994 * 119.64260 * 180.02562 * 6 5 4
36 36 H 1.07996 * 119.85738 * 180.23234 * 7 6 5
37 37 H 0.97000 * 120.00483 * 359.73134 * 11 9 8
38 38 H 1.08997 * 109.47185 * 65.00115 * 14 12 11
39 39 H 1.09002 * 109.47351 * 184.99998 * 14 12 11
40 40 H 0.97001 * 119.99299 * 0.02562 * 15 14 12
41 41 H 0.96999 * 120.00064 * 180.02562 * 19 18 16
42 42 H 1.09005 * 109.46517 * 184.99989 * 24 12 11
43 43 H 1.09001 * 109.46674 * 304.99544 * 24 12 11
44 44 H 1.09002 * 109.47328 * 304.99879 * 25 24 12
45 45 H 1.08998 * 109.47615 * 179.97438 * 26 25 24
46 46 H 1.08998 * 109.47045 * 300.00024 * 26 25 24
47 47 H 1.09006 * 109.47095 * 60.00052 * 26 25 24
48 48 H 1.08999 * 109.47283 * 59.99540 * 27 25 24
49 49 H 1.09002 * 109.47711 * 179.97438 * 27 25 24
50 50 H 1.09002 * 109.46877 * 300.00208 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2528 1.0659 0.0000
4 6 3.5622 0.7042 -0.0006
5 6 4.7592 1.4248 -0.0004
6 6 5.9666 0.7599 -0.0006
7 6 6.0121 -0.6227 0.0034
8 6 4.8321 -1.3648 -0.0022
9 6 4.8814 -2.8392 -0.0027
10 8 3.8493 -3.4821 -0.0024
11 7 6.0705 -3.4736 0.0019
12 6 6.1195 -4.9378 0.0075
13 1 5.2914 -5.3314 -0.5820
14 6 7.4443 -5.4061 -0.5979
15 7 7.6056 -4.8214 -1.9314
16 6 8.7237 -5.1008 -2.6709
17 1 9.4869 -5.7519 -2.2710
18 6 8.8768 -4.5464 -3.9343
19 7 7.9469 -3.7524 -4.4216
20 14 10.4023 -4.9270 -4.9428
21 1 11.2883 -5.8388 -4.1753
22 1 10.0040 -5.5800 -6.2157
23 1 11.1271 -3.6653 -5.2393
24 6 6.0082 -5.4463 1.4463
25 6 4.6325 -5.0853 2.0098
26 6 3.5496 -5.8345 1.2309
27 6 4.5658 -5.4821 3.4859
28 6 3.5981 -0.6995 -0.0015
29 7 2.2874 -1.1153 -0.0005
30 1 1.9762 -2.0340 -0.0004
31 1 -0.3633 -0.0001 1.0276
32 1 -0.3634 0.8900 -0.5138
33 1 -0.3633 -0.8900 -0.5140
34 1 4.7384 2.5046 0.0008
35 1 6.8873 1.3245 0.0000
36 1 6.9659 -1.1292 0.0070
37 1 6.8939 -2.9608 0.0015
38 1 8.2683 -5.0876 0.0406
39 1 7.4442 -6.4933 -0.6755
40 1 6.9203 -4.2363 -2.2905
41 1 8.0537 -3.3652 -5.3045
42 1 6.1336 -6.5290 1.4597
43 1 6.7838 -4.9831 2.0563
44 1 4.4713 -4.0114 1.9147
45 1 2.5694 -5.5776 1.6327
46 1 3.5970 -5.5517 0.1793
47 1 3.7107 -6.9083 1.3260
48 1 5.3373 -4.9484 4.0409
49 1 3.5858 -5.2245 3.8876
50 1 4.7271 -6.5559 3.5811
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714935100.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:24:15
Heat of formation + Delta-G solvation = 9.603601 kcal
Electronic energy + Delta-G solvation = -30951.728515 eV
Core-core repulsion = 26978.328319 eV
Total energy + Delta-G solvation = -3973.400196 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.24088 -41.14723 -38.46520 -37.79288 -36.45268 -35.06532 -34.12170 -33.11102
-32.25569 -31.47622 -30.15223 -28.57957 -27.96453 -27.19045 -25.11986 -24.42119
-23.37726 -22.31528 -21.87884 -21.39451 -20.82069 -19.38460 -18.78659 -18.57495
-17.51212 -17.07791 -16.96579 -16.59661 -16.36492 -16.06822 -15.45577 -15.34568
-15.20582 -15.13642 -14.83740 -14.52173 -14.33794 -14.18688 -13.87662 -13.62979
-13.51122 -13.26286 -13.05986 -13.00363 -12.96272 -12.84894 -12.81931 -12.55481
-12.50508 -12.33079 -12.05185 -11.89239 -11.73224 -11.64677 -11.40165 -11.32959
-11.24916 -10.98497 -10.72516 -9.95486 -9.39397 -9.19091 -9.00399 -7.93647
-5.23143 -0.44829 0.44800 1.44016 1.48450 1.49288 1.58920 1.94323
2.08917 2.21728 2.56448 2.87201 3.13050 3.40919 3.54602 3.66460
3.85890 3.92831 3.99619 4.07825 4.20470 4.23358 4.24096 4.34335
4.39042 4.41398 4.57170 4.66253 4.68765 4.78408 4.80311 4.86797
4.88525 4.91848 4.94764 4.99074 5.03596 5.08046 5.15333 5.21868
5.26103 5.37331 5.38538 5.40554 5.51946 5.56381 5.60019 5.65580
5.79395 6.26634 6.37101 6.58670 6.79550 7.23320 7.34462 8.07976
8.31547 9.29208
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.008826 B = 0.003699 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3171.824269 B = 7568.326273 C = 9566.657816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.279 3.721
3 N -0.521 5.521
4 C 0.011 3.989
5 C -0.044 4.044
6 C -0.130 4.130
7 C -0.061 4.061
8 C -0.147 4.147
9 C 0.559 3.441
10 O -0.562 6.562
11 N -0.698 5.698
12 C 0.148 3.852
13 H 0.068 0.932
14 C 0.144 3.856
15 N -0.742 5.742
16 C -0.241 4.241
17 H 0.079 0.921
18 C -0.072 4.072
19 N -0.967 5.967
20 Si 0.970 3.030
21 H -0.265 1.265
22 H -0.299 1.299
23 H -0.293 1.293
24 C -0.113 4.113
25 C -0.088 4.088
26 C -0.132 4.132
27 C -0.141 4.141
28 C 0.079 3.921
29 N -0.583 5.583
30 H 0.434 0.566
31 H 0.107 0.893
32 H 0.104 0.896
33 H 0.099 0.901
34 H 0.153 0.847
35 H 0.169 0.831
36 H 0.147 0.853
37 H 0.406 0.594
38 H 0.039 0.961
39 H 0.037 0.963
40 H 0.374 0.626
41 H 0.249 0.751
42 H 0.082 0.918
43 H 0.074 0.926
44 H 0.055 0.945
45 H 0.042 0.958
46 H 0.051 0.949
47 H 0.049 0.951
48 H 0.055 0.945
49 H 0.050 0.950
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.676 5.608 16.135 20.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.012 3.988
3 N -0.243 5.243
4 C -0.107 4.107
5 C -0.064 4.064
6 C -0.150 4.150
7 C -0.081 4.081
8 C -0.153 4.153
9 C 0.348 3.652
10 O -0.443 6.443
11 N -0.348 5.348
12 C 0.043 3.957
13 H 0.086 0.914
14 C 0.017 3.983
15 N -0.385 5.385
16 C -0.373 4.373
17 H 0.097 0.903
18 C -0.264 4.264
19 N -0.618 5.618
20 Si 0.800 3.200
21 H -0.189 1.189
22 H -0.227 1.227
23 H -0.220 1.220
24 C -0.152 4.152
25 C -0.107 4.107
26 C -0.189 4.189
27 C -0.198 4.198
28 C -0.035 4.035
29 N -0.195 5.195
30 H 0.276 0.724
31 H 0.126 0.874
32 H 0.123 0.877
33 H 0.117 0.883
34 H 0.171 0.829
35 H 0.186 0.814
36 H 0.165 0.835
37 H 0.243 0.757
38 H 0.057 0.943
39 H 0.054 0.946
40 H 0.206 0.794
41 H 0.058 0.942
42 H 0.101 0.899
43 H 0.093 0.907
44 H 0.074 0.926
45 H 0.061 0.939
46 H 0.070 0.930
47 H 0.068 0.932
48 H 0.074 0.926
49 H 0.069 0.931
50 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -11.471 5.888 16.127 20.648
hybrid contribution 1.064 -1.015 -1.249 1.929
sum -10.407 4.874 14.879 18.800
Atomic orbital electron populations
1.20600 0.80801 1.06034 1.05791 1.24592 0.97508 0.80345 0.96309
1.70451 1.00701 1.28596 1.24594 1.19471 0.93205 0.90247 1.07766
1.20781 0.88658 1.00992 0.95956 1.21195 0.98636 0.93473 1.01724
1.21489 0.96493 0.95105 0.94994 1.19006 0.91655 0.92473 1.12142
1.18230 0.84068 0.87202 0.75742 1.90644 1.33918 1.67650 1.52135
1.45792 1.08150 1.07492 1.73397 1.21211 0.97836 0.79394 0.97243
0.91385 1.21125 0.94527 0.96597 0.86025 1.42523 1.23059 1.57650
1.15278 1.19648 0.97825 1.22714 0.97096 0.90327 1.25514 1.01186
1.00657 0.99072 1.69841 1.36128 1.37576 1.18247 0.85121 0.79398
0.77117 0.78380 1.18888 1.22656 1.22046 1.21958 0.97731 1.01808
0.93699 1.21053 0.94415 1.00055 0.95167 1.21748 0.97686 0.98757
1.00692 1.21807 1.01367 1.01696 0.94933 1.18795 0.85583 0.95001
1.04144 1.43187 1.04298 1.11001 1.60986 0.72421 0.87438 0.87692
0.88277 0.82918 0.81365 0.83511 0.75741 0.94281 0.94562 0.79411
0.94227 0.89941 0.90688 0.92638 0.93862 0.93035 0.93241 0.92603
0.93060 0.92025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.96 10.51 71.24 0.75 -0.21 16
2 C 0.28 6.76 8.08 137.90 1.11 7.87 16
3 N -0.52 -15.24 11.28 -179.96 -2.03 -17.27 16
4 C 0.01 0.33 7.22 39.41 0.28 0.61 16
5 C -0.04 -1.09 10.09 22.53 0.23 -0.87 16
6 C -0.13 -2.90 9.99 22.20 0.22 -2.68 16
7 C -0.06 -1.58 9.53 22.57 0.22 -1.37 16
8 C -0.15 -4.51 5.88 -20.07 -0.12 -4.63 16
9 C 0.56 18.21 6.32 86.69 0.55 18.76 16
10 O -0.56 -19.34 10.24 -4.01 -0.04 -19.38 16
11 N -0.70 -21.63 4.42 -445.69 -1.97 -23.60 16
12 C 0.15 4.66 2.33 44.99 0.10 4.77 16
13 H 0.07 2.50 5.92 -2.39 -0.01 2.49 16
14 C 0.14 5.28 5.82 86.38 0.50 5.78 16
15 N -0.74 -35.79 5.43 -343.46 -1.87 -37.65 16
16 C -0.24 -12.90 9.99 84.04 0.84 -12.06 16
17 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16
18 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16
19 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16
20 Si 0.97 45.23 29.55 68.60 2.03 47.26 16
21 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16
22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16
23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16
24 C -0.11 -2.82 4.36 30.59 0.13 -2.69 16
25 C -0.09 -2.22 2.38 -10.80 -0.03 -2.25 16
26 C -0.13 -3.50 8.03 71.98 0.58 -2.93 16
27 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16
28 C 0.08 2.44 6.88 39.26 0.27 2.71 16
29 N -0.58 -15.78 6.00 -178.61 -1.07 -16.85 16
30 H 0.43 11.01 7.72 -92.71 -0.72 10.30 16
31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16
32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16
34 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16
35 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16
36 H 0.15 3.38 6.39 -2.91 -0.02 3.36 16
37 H 0.41 11.99 6.63 -92.71 -0.61 11.38 16
38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
40 H 0.37 19.76 7.33 -92.71 -0.68 19.08 16
41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16
42 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16
43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
44 H 0.06 1.63 5.19 -2.39 -0.01 1.61 16
45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
46 H 0.05 1.65 4.75 -2.39 -0.01 1.63 16
47 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16
48 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
50 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
Total: -1.00 -70.95 397.31 1.08 -69.86
By element:
Atomic # 1 Polarization: 51.75 SS G_CDS: -1.02 Total: 50.73 kcal
Atomic # 6 Polarization: -1.70 SS G_CDS: 6.77 Total: 5.07 kcal
Atomic # 7 Polarization: -146.89 SS G_CDS: -6.66 Total: -153.54 kcal
Atomic # 8 Polarization: -19.34 SS G_CDS: -0.04 Total: -19.38 kcal
Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal
Total: -70.95 1.08 -69.86 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714935100.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.466 kcal
(2) G-P(sol) polarization free energy of solvation -70.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds