Wall clock time and date at job start Wed Apr 1 2020 03:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47281 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47402 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47326 * 305.00309 * 5 4 3 7 7 C 1.52998 * 109.47513 * 184.99945 * 5 4 3 8 8 N 1.46497 * 109.47224 * 185.00233 * 7 5 4 9 9 C 1.36939 * 120.00012 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99747 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00387 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99432 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00338 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46831 * 90.00126 * 13 11 9 15 15 H 1.48493 * 109.46898 * 209.99913 * 13 11 9 16 16 H 1.48500 * 109.46850 * 329.99953 * 13 11 9 17 17 N 1.46499 * 109.47117 * 64.99678 * 5 4 3 18 18 C 1.34778 * 120.00301 * 275.00257 * 17 5 4 19 19 O 1.21593 * 119.99856 * 0.02562 * 18 17 5 20 20 C 1.47529 * 120.00352 * 179.97438 * 18 17 5 21 21 C 1.39434 * 120.24594 * 0.02562 * 20 18 17 22 22 C 1.38287 * 120.28210 * 179.72667 * 21 20 18 23 23 C 1.37878 * 120.72556 * 0.52297 * 22 21 20 24 24 C 1.39682 * 120.10418 * 359.46208 * 23 22 21 25 25 N 1.35858 * 133.50807 * 180.30300 * 24 23 22 26 26 C 1.30087 * 109.53349 * 179.97438 * 25 24 23 27 27 C 1.50700 * 124.97470 * 180.02562 * 26 25 24 28 28 N 1.36121 * 110.05395 * 359.97438 * 26 25 24 29 29 H 0.96996 * 126.31592 * 179.97438 * 28 26 25 30 30 C 1.37513 * 107.37960 * 0.02562 * 28 26 25 31 31 H 1.09000 * 109.47077 * 60.00588 * 1 2 3 32 32 H 1.09001 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47539 * 300.00244 * 1 2 3 34 34 H 1.09005 * 109.47488 * 239.99787 * 2 1 3 35 35 H 1.08996 * 109.47290 * 119.99864 * 2 1 3 36 36 H 1.08995 * 109.47197 * 59.99546 * 3 2 1 37 37 H 1.09000 * 109.46748 * 299.99614 * 3 2 1 38 38 H 1.09005 * 109.47435 * 59.99620 * 4 3 2 39 39 H 1.09001 * 109.46712 * 300.00223 * 4 3 2 40 40 H 1.09009 * 109.46793 * 305.00220 * 7 5 4 41 41 H 1.08999 * 109.47206 * 64.99860 * 7 5 4 42 42 H 0.96995 * 120.00055 * 359.97438 * 8 7 5 43 43 H 0.97004 * 120.00013 * 180.02562 * 12 11 9 44 44 H 0.97000 * 120.00100 * 95.00058 * 17 5 4 45 45 H 1.08004 * 119.86044 * 359.97438 * 21 20 18 46 46 H 1.08006 * 119.63792 * 180.28491 * 22 21 20 47 47 H 1.08002 * 119.95074 * 179.74779 * 23 22 21 48 48 H 1.09002 * 109.47187 * 269.97678 * 27 26 25 49 49 H 1.09001 * 109.47064 * 29.97034 * 27 26 25 50 50 H 1.08999 * 109.47488 * 149.97110 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8431 7 6 5.6046 2.8870 -0.1276 8 7 6.1028 4.2595 -0.0084 9 6 7.4466 4.5098 -0.0912 10 1 8.1391 3.6952 -0.2440 11 6 7.9187 5.8103 0.0212 12 7 7.0746 6.8030 0.2069 13 14 9.7518 6.1516 -0.0911 14 1 10.1225 6.4036 -1.5067 15 1 10.0841 7.3451 0.7276 16 1 10.5059 4.9774 0.4167 17 7 3.6928 3.5405 1.2504 18 6 2.4755 4.1074 1.3659 19 8 1.6984 4.0745 0.4313 20 6 2.0854 4.7669 2.6267 21 6 2.9723 4.8072 3.7019 22 6 2.6096 5.4301 4.8820 23 6 1.3663 6.0101 5.0192 24 6 0.4598 5.9836 3.9568 25 7 -0.8016 6.4604 3.7915 26 6 -1.2218 6.1731 2.5944 27 6 -2.5756 6.5394 2.0430 28 7 -0.2592 5.4942 1.9122 29 1 -0.3236 5.1659 1.0018 30 6 0.8211 5.3584 2.7522 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6765 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.9330 0.9289 -0.8908 39 1 3.9336 0.9287 0.8891 40 1 6.0356 2.2740 0.6641 41 1 5.8893 2.4801 -1.0979 42 1 5.4808 4.9911 0.1284 43 1 7.4044 7.7119 0.2851 44 1 4.3125 3.5664 1.9962 45 1 3.9482 4.3534 3.6112 46 1 3.3064 5.4592 5.7067 47 1 1.0946 6.4897 5.9479 48 1 -3.2838 5.7389 2.2570 49 1 -2.9198 7.4629 2.5085 50 1 -2.5026 6.6813 0.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717532261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:56 Heat of formation + Delta-G solvation = 22.448405 kcal Electronic energy + Delta-G solvation = -30552.440847 eV Core-core repulsion = 26579.597643 eV Total energy + Delta-G solvation = -3972.843204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.23547 -39.80741 -37.31079 -36.48242 -34.95551 -33.59030 -33.10532 -31.75481 -31.33185 -30.48994 -29.71308 -27.71292 -27.23422 -24.29476 -23.66251 -22.35572 -22.29279 -21.07646 -20.80182 -20.71136 -20.11699 -17.98868 -17.56620 -17.07912 -16.41942 -16.09202 -15.66184 -15.30076 -15.08071 -14.75520 -14.61117 -14.19772 -13.91697 -13.86173 -13.47164 -13.34269 -13.24420 -13.10083 -12.90509 -12.77297 -12.67030 -12.13751 -12.06268 -11.95556 -11.91402 -11.58312 -11.36238 -11.11185 -10.97318 -10.88236 -10.82832 -10.66436 -10.40163 -10.35305 -10.26428 -10.04877 -9.76363 -9.62755 -8.95318 -8.73254 -8.38075 -8.15549 -7.00000 -5.80926 -3.11383 0.58071 1.47600 2.45878 2.89955 3.21161 3.39632 3.42251 3.45776 3.47438 3.93974 3.99498 4.52132 4.57760 4.80889 4.87328 4.90939 5.00143 5.01790 5.13102 5.16582 5.19993 5.34347 5.35695 5.37542 5.42583 5.50916 5.52254 5.58117 5.70983 5.78401 5.84325 5.90108 5.92850 5.93646 5.99696 6.11980 6.17364 6.24431 6.27563 6.36445 6.39138 6.41366 6.44131 6.58504 6.65482 6.74412 6.89904 7.33496 7.64919 7.78389 7.79982 8.36294 8.43387 9.48351 10.03644 10.38949 11.41047 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.003651 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.309607 B = 7668.067312 C =10008.722804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.088 0.912 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.700 5.700 18 C 0.564 3.436 19 O -0.555 6.555 20 C -0.126 4.126 21 C -0.057 4.057 22 C -0.136 4.136 23 C -0.041 4.041 24 C 0.033 3.967 25 N -0.493 5.493 26 C 0.276 3.724 27 C -0.076 4.076 28 N -0.581 5.581 29 H 0.432 0.568 30 C 0.103 3.897 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.404 0.596 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.174 -8.045 6.107 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.106 0.894 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.207 1.207 17 N -0.350 5.350 18 C 0.352 3.648 19 O -0.435 6.435 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.156 4.156 23 C -0.060 4.060 24 C -0.085 4.085 25 N -0.214 5.214 26 C 0.009 3.991 27 C -0.135 4.135 28 N -0.192 5.192 29 H 0.274 0.726 30 C -0.011 4.011 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.240 0.760 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.106 0.894 49 H 0.114 0.886 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.955 -7.650 6.072 20.439 hybrid contribution 1.737 -0.004 -0.764 1.897 sum -16.218 -7.654 5.308 18.702 Atomic orbital electron populations 1.21734 0.96327 1.00877 1.01693 1.21575 0.95562 0.97767 1.01403 1.21658 0.94836 0.95301 1.03060 1.21976 0.96054 0.96251 1.02260 1.21336 0.96154 0.92423 0.86709 0.89408 1.20969 0.89140 0.89449 0.98854 1.42350 1.05448 1.01954 1.87879 1.19201 0.83607 0.92486 1.42291 0.91151 1.24751 0.97670 0.95662 1.02588 1.69670 1.32906 0.99021 1.56126 0.86199 0.85094 0.77429 0.77487 1.21730 1.21748 1.20740 1.45848 1.15583 1.56309 1.17242 1.18002 0.82125 0.77835 0.86834 1.90662 1.51862 1.60649 1.40357 1.18927 0.92734 1.05649 0.95869 1.21230 0.98091 0.96639 0.91745 1.20839 0.96296 1.00227 0.98266 1.20420 0.91578 0.97263 0.96769 1.19030 0.93012 1.02338 0.94075 1.70440 1.10141 1.24860 1.16006 1.23661 0.93184 0.93858 0.88377 1.20365 0.88176 1.03744 1.01189 1.43107 1.12173 1.47669 1.16285 0.72593 1.18539 0.89473 1.01211 0.91832 0.92863 0.93272 0.93112 0.92385 0.92577 0.91886 0.91611 0.91071 0.91900 0.95763 0.94857 0.77994 0.93453 0.75998 0.84524 0.84544 0.84994 0.89418 0.88567 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.15 0.37 -1.16 16 2 C -0.13 -1.38 5.93 -26.73 -0.16 -1.54 16 3 C -0.11 -1.46 3.81 -26.73 -0.10 -1.56 16 4 C -0.13 -1.66 4.89 -26.74 -0.13 -1.79 16 5 C 0.14 2.23 2.41 -67.94 -0.16 2.06 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.14 2.71 5.82 -4.04 -0.02 2.68 16 8 N -0.73 -17.71 5.43 -59.91 -0.33 -18.04 16 9 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 13 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 N -0.70 -10.92 4.42 -54.85 -0.24 -11.17 16 18 C 0.56 9.18 6.33 -12.47 -0.08 9.10 16 19 O -0.55 -9.67 12.42 5.28 0.07 -9.60 16 20 C -0.13 -1.92 5.88 -104.95 -0.62 -2.53 16 21 C -0.06 -0.75 9.53 -39.12 -0.37 -1.13 16 22 C -0.14 -1.60 9.99 -39.69 -0.40 -2.00 16 23 C -0.04 -0.52 10.09 -39.17 -0.40 -0.91 16 24 C 0.03 0.50 7.22 -84.71 -0.61 -0.11 16 25 N -0.49 -7.23 11.28 -8.23 -0.09 -7.32 16 26 C 0.28 3.39 8.08 -154.76 -1.25 2.14 16 27 C -0.08 -0.55 10.51 36.01 0.38 -0.17 16 28 N -0.58 -7.80 6.00 -7.81 -0.05 -7.85 16 29 H 0.43 5.42 7.72 -40.82 -0.32 5.10 16 30 C 0.10 1.59 6.88 -83.77 -0.58 1.01 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.92 5.65 -51.93 -0.29 0.63 16 37 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.39 10.06 7.33 -40.82 -0.30 9.76 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.40 6.02 6.63 -40.82 -0.27 5.75 16 45 H 0.14 1.61 6.39 -52.48 -0.34 1.28 16 46 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 47 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -33.04 405.38 -10.99 -44.03 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -7.78 Total: 16.90 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -4.38 Total: -3.08 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: 0.02 Total: -71.35 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.04 -10.99 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717532261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.476 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds