Wall clock time and date at job start Wed Apr 1 2020 03:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47281 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47402 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47326 * 305.00309 * 5 4 3 7 7 C 1.52998 * 109.47513 * 184.99945 * 5 4 3 8 8 N 1.46497 * 109.47224 * 185.00233 * 7 5 4 9 9 C 1.36939 * 120.00012 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99747 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00387 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99432 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00338 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46831 * 90.00126 * 13 11 9 15 15 H 1.48493 * 109.46898 * 209.99913 * 13 11 9 16 16 H 1.48500 * 109.46850 * 329.99953 * 13 11 9 17 17 N 1.46499 * 109.47117 * 64.99678 * 5 4 3 18 18 C 1.34778 * 120.00301 * 275.00257 * 17 5 4 19 19 O 1.21593 * 119.99856 * 0.02562 * 18 17 5 20 20 C 1.47529 * 120.00352 * 179.97438 * 18 17 5 21 21 C 1.39434 * 120.24594 * 0.02562 * 20 18 17 22 22 C 1.38287 * 120.28210 * 179.72667 * 21 20 18 23 23 C 1.37878 * 120.72556 * 0.52297 * 22 21 20 24 24 C 1.39682 * 120.10418 * 359.46208 * 23 22 21 25 25 N 1.35858 * 133.50807 * 180.30300 * 24 23 22 26 26 C 1.30087 * 109.53349 * 179.97438 * 25 24 23 27 27 C 1.50700 * 124.97470 * 180.02562 * 26 25 24 28 28 N 1.36121 * 110.05395 * 359.97438 * 26 25 24 29 29 H 0.96996 * 126.31592 * 179.97438 * 28 26 25 30 30 C 1.37513 * 107.37960 * 0.02562 * 28 26 25 31 31 H 1.09000 * 109.47077 * 60.00588 * 1 2 3 32 32 H 1.09001 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47539 * 300.00244 * 1 2 3 34 34 H 1.09005 * 109.47488 * 239.99787 * 2 1 3 35 35 H 1.08996 * 109.47290 * 119.99864 * 2 1 3 36 36 H 1.08995 * 109.47197 * 59.99546 * 3 2 1 37 37 H 1.09000 * 109.46748 * 299.99614 * 3 2 1 38 38 H 1.09005 * 109.47435 * 59.99620 * 4 3 2 39 39 H 1.09001 * 109.46712 * 300.00223 * 4 3 2 40 40 H 1.09009 * 109.46793 * 305.00220 * 7 5 4 41 41 H 1.08999 * 109.47206 * 64.99860 * 7 5 4 42 42 H 0.96995 * 120.00055 * 359.97438 * 8 7 5 43 43 H 0.97004 * 120.00013 * 180.02562 * 12 11 9 44 44 H 0.97000 * 120.00100 * 95.00058 * 17 5 4 45 45 H 1.08004 * 119.86044 * 359.97438 * 21 20 18 46 46 H 1.08006 * 119.63792 * 180.28491 * 22 21 20 47 47 H 1.08002 * 119.95074 * 179.74779 * 23 22 21 48 48 H 1.09002 * 109.47187 * 269.97678 * 27 26 25 49 49 H 1.09001 * 109.47064 * 29.97034 * 27 26 25 50 50 H 1.08999 * 109.47488 * 149.97110 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8431 7 6 5.6046 2.8870 -0.1276 8 7 6.1028 4.2595 -0.0084 9 6 7.4466 4.5098 -0.0912 10 1 8.1391 3.6952 -0.2440 11 6 7.9187 5.8103 0.0212 12 7 7.0746 6.8030 0.2069 13 14 9.7518 6.1516 -0.0911 14 1 10.1225 6.4036 -1.5067 15 1 10.0841 7.3451 0.7276 16 1 10.5059 4.9774 0.4167 17 7 3.6928 3.5405 1.2504 18 6 2.4755 4.1074 1.3659 19 8 1.6984 4.0745 0.4313 20 6 2.0854 4.7669 2.6267 21 6 2.9723 4.8072 3.7019 22 6 2.6096 5.4301 4.8820 23 6 1.3663 6.0101 5.0192 24 6 0.4598 5.9836 3.9568 25 7 -0.8016 6.4604 3.7915 26 6 -1.2218 6.1731 2.5944 27 6 -2.5756 6.5394 2.0430 28 7 -0.2592 5.4942 1.9122 29 1 -0.3236 5.1659 1.0018 30 6 0.8211 5.3584 2.7522 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6765 1.9564 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 3.9330 0.9289 -0.8908 39 1 3.9336 0.9287 0.8891 40 1 6.0356 2.2740 0.6641 41 1 5.8893 2.4801 -1.0979 42 1 5.4808 4.9911 0.1284 43 1 7.4044 7.7119 0.2851 44 1 4.3125 3.5664 1.9962 45 1 3.9482 4.3534 3.6112 46 1 3.3064 5.4592 5.7067 47 1 1.0946 6.4897 5.9479 48 1 -3.2838 5.7389 2.2570 49 1 -2.9198 7.4629 2.5085 50 1 -2.5026 6.6813 0.9647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717532261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:55 Heat of formation + Delta-G solvation = 2.070314 kcal Electronic energy + Delta-G solvation = -30553.324507 eV Core-core repulsion = 26579.597643 eV Total energy + Delta-G solvation = -3973.726864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.25197 -41.05635 -38.37861 -37.78138 -36.27861 -35.15163 -34.16188 -33.17134 -32.28467 -31.95989 -30.76209 -28.70641 -28.58598 -25.94315 -24.79027 -23.77702 -23.38330 -22.17004 -21.89152 -21.79332 -21.36430 -19.39102 -18.80851 -18.57884 -17.58756 -17.25923 -16.82657 -16.60537 -16.25432 -16.05438 -15.82931 -15.37063 -15.24217 -15.16660 -15.03612 -14.49393 -14.20095 -14.19102 -13.98313 -13.74262 -13.53957 -13.49220 -13.18052 -13.03998 -12.88836 -12.84791 -12.78859 -12.54880 -12.50601 -12.12043 -12.03603 -11.90556 -11.86007 -11.71947 -11.43475 -11.39631 -11.34953 -10.98777 -10.82007 -10.01077 -9.40885 -9.20440 -9.01084 -7.93716 -5.23545 -0.46693 0.43431 1.41984 1.48823 1.49807 1.58336 1.92847 2.05958 2.18781 2.56402 2.85423 3.11937 3.40665 3.52674 3.62570 3.83003 3.91814 4.02066 4.05388 4.19126 4.22021 4.23077 4.29358 4.32540 4.36840 4.53764 4.55732 4.59159 4.68206 4.78475 4.82605 4.90215 4.91750 4.94184 4.97098 5.02844 5.05691 5.11792 5.20456 5.24998 5.29617 5.36993 5.39009 5.39410 5.51237 5.54381 5.60111 5.78291 6.26256 6.35122 6.54048 6.78092 7.17941 7.34022 8.07350 8.30883 9.28976 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.003651 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.309607 B = 7668.067312 C =10008.722804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.117 4.117 5 C 0.149 3.851 6 H 0.060 0.940 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.080 0.920 11 C -0.072 4.072 12 N -0.967 5.967 13 Si 0.971 3.029 14 H -0.292 1.292 15 H -0.298 1.298 16 H -0.266 1.266 17 N -0.697 5.697 18 C 0.561 3.439 19 O -0.573 6.573 20 C -0.149 4.149 21 C -0.059 4.059 22 C -0.130 4.130 23 C -0.043 4.043 24 C 0.011 3.989 25 N -0.520 5.520 26 C 0.280 3.720 27 C -0.074 4.074 28 N -0.584 5.584 29 H 0.433 0.567 30 C 0.077 3.923 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.407 0.593 45 H 0.148 0.852 46 H 0.170 0.830 47 H 0.155 0.845 48 H 0.108 0.892 49 H 0.105 0.895 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 -9.514 6.834 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.079 0.921 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.375 4.375 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.618 5.618 13 Si 0.801 3.199 14 H -0.219 1.219 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.347 5.347 18 C 0.350 3.650 19 O -0.455 6.455 20 C -0.155 4.155 21 C -0.079 4.079 22 C -0.150 4.150 23 C -0.062 4.062 24 C -0.106 4.106 25 N -0.242 5.242 26 C 0.013 3.987 27 C -0.132 4.132 28 N -0.196 5.196 29 H 0.275 0.725 30 C -0.036 4.036 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.244 0.756 45 H 0.166 0.834 46 H 0.188 0.812 47 H 0.172 0.828 48 H 0.126 0.874 49 H 0.124 0.876 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.813 -9.178 6.798 21.161 hybrid contribution 1.627 0.415 -0.999 1.954 sum -16.186 -8.762 5.799 19.298 Atomic orbital electron populations 1.21721 0.95869 1.01810 1.01111 1.21546 0.95987 0.96084 1.02286 1.21524 0.94705 0.96542 1.01236 1.21916 0.95990 0.94103 1.03590 1.21158 0.94240 0.94076 0.86129 0.92133 1.21123 0.90786 0.86894 0.99369 1.42526 1.04514 1.03746 1.87809 1.19624 0.84991 0.92659 1.40210 0.90255 1.25528 1.01676 0.95708 1.03520 1.69836 1.34656 0.99021 1.58292 0.85172 0.80488 0.77293 0.76973 1.21932 1.22445 1.19059 1.45783 1.15541 1.56357 1.17065 1.18234 0.82008 0.77607 0.87161 1.90637 1.52388 1.61374 1.41124 1.18988 0.93523 1.06936 0.96044 1.21490 0.98165 0.96480 0.91807 1.21206 0.96452 0.98815 0.98504 1.20799 0.91471 0.96901 0.97069 1.19479 0.93709 1.02752 0.94686 1.70456 1.10293 1.26204 1.17288 1.24607 0.94221 0.92140 0.87739 1.20607 0.85731 1.04766 1.02141 1.43204 1.12183 1.47927 1.16292 0.72495 1.18812 0.90086 1.02053 0.92672 0.93241 0.91541 0.93959 0.91312 0.91765 0.93671 0.93543 0.89675 0.90459 0.94057 0.94419 0.79463 0.94211 0.75601 0.83433 0.81221 0.82782 0.87399 0.87625 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.12 -2.49 5.93 30.59 0.18 -2.31 16 3 C -0.10 -2.65 3.81 30.60 0.12 -2.54 16 4 C -0.12 -2.94 4.89 30.59 0.15 -2.79 16 5 C 0.15 4.79 2.41 44.99 0.11 4.89 16 6 H 0.06 2.29 7.58 -2.39 -0.02 2.28 16 7 C 0.15 5.33 5.82 86.38 0.50 5.83 16 8 N -0.74 -36.01 5.43 -343.45 -1.87 -37.87 16 9 C -0.24 -13.03 9.99 84.03 0.84 -12.20 16 10 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 11 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 12 N -0.97 -58.61 13.06 21.65 0.28 -58.32 16 13 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 N -0.70 -22.06 4.42 -445.71 -1.97 -24.03 16 18 C 0.56 18.90 6.33 86.69 0.55 19.44 16 19 O -0.57 -20.92 12.42 -4.01 -0.05 -20.97 16 20 C -0.15 -4.67 5.88 -20.07 -0.12 -4.78 16 21 C -0.06 -1.56 9.53 22.57 0.22 -1.35 16 22 C -0.13 -2.89 9.99 22.20 0.22 -2.67 16 23 C -0.04 -1.06 10.09 22.53 0.23 -0.83 16 24 C 0.01 0.35 7.22 39.41 0.28 0.63 16 25 N -0.52 -15.30 11.28 -179.95 -2.03 -17.33 16 26 C 0.28 6.85 8.08 137.90 1.11 7.97 16 27 C -0.07 -0.98 10.51 71.24 0.75 -0.23 16 28 N -0.58 -16.19 6.00 -178.61 -1.07 -17.26 16 29 H 0.43 11.37 7.72 -92.71 -0.72 10.65 16 30 C 0.08 2.46 6.88 39.26 0.27 2.73 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.34 5.65 -2.39 -0.01 1.32 16 37 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.37 19.87 7.33 -92.71 -0.68 19.20 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.41 12.15 6.63 -92.71 -0.61 11.54 16 45 H 0.15 3.41 6.39 -2.91 -0.02 3.40 16 46 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 48 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.27 405.38 0.88 -71.39 By element: Atomic # 1 Polarization: 52.10 SS G_CDS: -1.03 Total: 51.07 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.59 Total: 6.08 kcal Atomic # 7 Polarization: -148.16 SS G_CDS: -6.66 Total: -154.82 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.27 0.88 -71.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717532261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.458 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds