Wall clock time and date at job start Wed Apr 1 2020 04:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 C 1.52995 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47319 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47151 * 54.99554 * 5 4 3 7 7 C 1.53000 * 109.47762 * 174.99824 * 5 4 3 8 8 N 1.46498 * 109.47463 * 174.99926 * 7 5 4 9 9 C 1.36932 * 119.99854 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00569 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00094 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99739 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00183 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47271 * 59.99816 * 13 11 9 15 15 H 1.48502 * 109.47241 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47129 * 299.99532 * 13 11 9 17 17 N 1.46499 * 109.47300 * 294.99979 * 5 4 3 18 18 C 1.34779 * 120.00297 * 84.99321 * 17 5 4 19 19 O 1.21593 * 119.99870 * 0.02562 * 18 17 5 20 20 C 1.47519 * 120.00363 * 180.02562 * 18 17 5 21 21 C 1.39440 * 120.24925 * 0.02768 * 20 18 17 22 22 C 1.38288 * 120.28110 * 179.70274 * 21 20 18 23 23 C 1.37878 * 120.72975 * 0.55690 * 22 21 20 24 24 C 1.39682 * 120.10418 * 359.43799 * 23 22 21 25 25 N 1.35864 * 133.51336 * 180.25065 * 24 23 22 26 26 C 1.30089 * 109.53241 * 180.02562 * 25 24 23 27 27 C 1.50699 * 124.96853 * 180.02562 * 26 25 24 28 28 N 1.36118 * 110.05458 * 359.97438 * 26 25 24 29 29 H 0.96996 * 126.30997 * 180.02562 * 28 26 25 30 30 C 1.37515 * 107.38108 * 0.02562 * 28 26 25 31 31 H 1.08996 * 109.47685 * 60.00038 * 1 2 3 32 32 H 1.09010 * 109.46864 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47429 * 299.99990 * 1 2 3 34 34 H 1.09002 * 109.47429 * 240.00010 * 2 1 3 35 35 H 1.08995 * 109.47207 * 119.99738 * 2 1 3 36 36 H 1.08994 * 109.47274 * 60.00154 * 3 2 1 37 37 H 1.09005 * 109.46492 * 299.99739 * 3 2 1 38 38 H 1.09002 * 109.47626 * 59.99787 * 4 3 2 39 39 H 1.08996 * 109.47322 * 299.99842 * 4 3 2 40 40 H 1.09001 * 109.46773 * 295.00275 * 7 5 4 41 41 H 1.09002 * 109.46653 * 54.99934 * 7 5 4 42 42 H 0.96999 * 119.99692 * 0.02562 * 8 7 5 43 43 H 0.97002 * 120.00023 * 180.02562 * 12 11 9 44 44 H 0.97000 * 120.00098 * 265.00365 * 17 5 4 45 45 H 1.07999 * 119.86170 * 359.97438 * 21 20 18 46 46 H 1.07997 * 119.63614 * 180.27031 * 22 21 20 47 47 H 1.08002 * 119.95074 * 179.72371 * 23 22 21 48 48 H 1.09002 * 109.46970 * 89.97672 * 27 26 25 49 49 H 1.09003 * 109.46685 * 209.97413 * 27 26 25 50 50 H 1.08998 * 109.47477 * 329.97182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6455 3.4244 0.8405 7 6 5.6047 2.8871 0.1238 8 7 6.1028 4.2596 0.0034 9 6 7.4466 4.5098 0.0850 10 1 8.1393 3.6955 0.2385 11 6 7.9186 5.8103 -0.0286 12 7 7.0744 6.8029 -0.2141 13 14 9.7518 6.1516 0.0820 14 1 10.4580 5.4181 -0.9989 15 1 9.9940 7.6089 -0.0694 16 1 10.2608 5.6993 1.4017 17 7 3.6918 3.5397 -1.2531 18 6 2.4744 4.1065 -1.3680 19 8 1.6983 4.0750 -0.4325 20 6 2.0834 4.7653 -2.6287 21 6 2.9690 4.8040 -3.7051 22 6 2.6009 5.4160 -4.8893 23 6 1.3617 6.0058 -5.0220 24 6 0.4562 5.9805 -3.9588 25 7 -0.8051 6.4574 -3.7926 26 6 -1.2239 6.1713 -2.5947 27 6 -2.5776 6.5372 -2.0427 28 7 -0.2610 5.4922 -1.9133 29 1 -0.3246 5.1647 -1.0025 30 6 0.8186 5.3559 -2.7541 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6765 1.9563 -0.8901 38 1 3.9329 0.9289 -0.8908 39 1 3.9336 0.9287 0.8891 40 1 5.8902 2.4808 1.0942 41 1 6.0350 2.2737 -0.6678 42 1 5.4806 4.9910 -0.1334 43 1 7.4042 7.7117 -0.2939 44 1 4.3110 3.5651 -1.9994 45 1 3.9450 4.3504 -3.6150 46 1 3.2934 5.4361 -5.7178 47 1 1.0890 6.4841 -5.9511 48 1 -3.2855 5.7361 -2.2558 49 1 -2.5039 6.6797 -0.9646 50 1 -2.9226 7.4603 -2.5085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717532262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:00 Heat of formation + Delta-G solvation = 22.549089 kcal Electronic energy + Delta-G solvation = -30552.470351 eV Core-core repulsion = 26579.631514 eV Total energy + Delta-G solvation = -3972.838838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23485 -39.80709 -37.31051 -36.48190 -34.95457 -33.58867 -33.10476 -31.75423 -31.33151 -30.48891 -29.71285 -27.71302 -27.23320 -24.29278 -23.66245 -22.35559 -22.29060 -21.07608 -20.80122 -20.71096 -20.11638 -17.98828 -17.56614 -17.07740 -16.41915 -16.09138 -15.66218 -15.29934 -15.08096 -14.75401 -14.61128 -14.19806 -13.91681 -13.86130 -13.47239 -13.34172 -13.23894 -13.10159 -12.90508 -12.77310 -12.67108 -12.13694 -12.06280 -11.95302 -11.91290 -11.58391 -11.36229 -11.11101 -10.96928 -10.87371 -10.82131 -10.66387 -10.41341 -10.35289 -10.26460 -10.06769 -9.75824 -9.62730 -8.94708 -8.73168 -8.38102 -8.15525 -6.99922 -5.80587 -3.11085 0.58087 1.47569 2.45873 2.89956 3.21170 3.40034 3.42360 3.45787 3.46841 3.94099 3.99394 4.52316 4.57781 4.80934 4.87308 4.90958 5.00133 5.01811 5.13101 5.16584 5.20003 5.34329 5.35719 5.37538 5.42706 5.50931 5.52344 5.58120 5.70988 5.78490 5.84293 5.90161 5.92888 5.93687 5.99778 6.12001 6.17394 6.24474 6.27647 6.36431 6.39142 6.41403 6.44229 6.58515 6.65577 6.74400 6.89997 7.33498 7.64586 7.78410 7.80005 8.36597 8.43443 9.48569 10.03871 10.39223 11.41306 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.003650 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.455891 B = 7670.012319 C =10007.960238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.088 0.912 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.246 4.246 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.700 5.700 18 C 0.564 3.436 19 O -0.555 6.555 20 C -0.126 4.126 21 C -0.057 4.057 22 C -0.136 4.136 23 C -0.040 4.040 24 C 0.033 3.967 25 N -0.493 5.493 26 C 0.276 3.724 27 C -0.076 4.076 28 N -0.581 5.581 29 H 0.432 0.568 30 C 0.103 3.897 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.404 0.596 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.183 -8.021 -6.077 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.106 0.894 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.377 4.377 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.577 5.577 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.350 5.350 18 C 0.352 3.648 19 O -0.435 6.435 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.156 4.156 23 C -0.060 4.060 24 C -0.085 4.085 25 N -0.214 5.214 26 C 0.009 3.991 27 C -0.135 4.135 28 N -0.192 5.192 29 H 0.274 0.726 30 C -0.010 4.010 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.042 0.958 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.240 0.760 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.967 -7.616 -6.033 20.426 hybrid contribution 1.745 -0.016 0.753 1.900 sum -16.222 -7.632 -5.280 18.690 Atomic orbital electron populations 1.21736 0.96327 1.00876 1.01693 1.21575 0.95561 0.97767 1.01403 1.21658 0.94838 0.95303 1.03058 1.21975 0.96053 0.96254 1.02260 1.21336 0.96146 0.92433 0.86708 0.89407 1.20969 0.89138 0.89454 0.98850 1.42340 1.05419 1.01960 1.87894 1.19157 0.83607 0.92478 1.42438 0.91202 1.24750 0.97663 0.95653 1.02569 1.69659 1.32983 0.99061 1.56032 0.86273 0.85122 0.76924 0.77850 1.21230 1.21686 1.21283 1.45849 1.15582 1.56341 1.17210 1.17999 0.82120 0.77837 0.86839 1.90662 1.51928 1.60653 1.40289 1.18928 0.92704 1.05665 0.95890 1.21230 0.98089 0.96669 0.91703 1.20838 0.96366 1.00241 0.98202 1.20420 0.91635 0.97193 0.96766 1.19031 0.92997 1.02339 0.94094 1.70444 1.10170 1.24870 1.15963 1.23661 0.93181 0.93867 0.88373 1.20365 0.88177 1.03746 1.01185 1.43106 1.12207 1.47661 1.16259 0.72592 1.18542 0.89476 1.01211 0.91819 0.93107 0.93272 0.92869 0.92575 0.92386 0.91604 0.91892 0.91904 0.91068 0.94862 0.95770 0.77991 0.93398 0.75998 0.84525 0.84549 0.84994 0.89419 0.90062 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.13 -1.38 5.93 -26.73 -0.16 -1.54 16 3 C -0.11 -1.46 3.82 -26.73 -0.10 -1.56 16 4 C -0.13 -1.66 4.89 -26.74 -0.13 -1.80 16 5 C 0.14 2.23 2.42 -67.93 -0.16 2.06 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.14 2.71 5.82 -4.04 -0.02 2.69 16 8 N -0.73 -17.72 5.43 -59.91 -0.33 -18.05 16 9 C -0.25 -6.66 9.99 -15.06 -0.15 -6.81 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 13 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 N -0.70 -10.93 4.42 -54.85 -0.24 -11.17 16 18 C 0.56 9.18 6.33 -12.48 -0.08 9.10 16 19 O -0.55 -9.67 12.42 5.28 0.07 -9.61 16 20 C -0.13 -1.92 5.88 -104.95 -0.62 -2.54 16 21 C -0.06 -0.75 9.53 -39.12 -0.37 -1.12 16 22 C -0.14 -1.60 9.99 -39.69 -0.40 -2.00 16 23 C -0.04 -0.51 10.09 -39.17 -0.40 -0.91 16 24 C 0.03 0.50 7.22 -84.71 -0.61 -0.11 16 25 N -0.49 -7.23 11.28 -8.23 -0.09 -7.32 16 26 C 0.28 3.39 8.08 -154.77 -1.25 2.14 16 27 C -0.08 -0.55 10.51 36.01 0.38 -0.17 16 28 N -0.58 -7.80 6.00 -7.81 -0.05 -7.85 16 29 H 0.43 5.42 7.72 -40.82 -0.32 5.10 16 30 C 0.10 1.59 6.88 -83.76 -0.58 1.01 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 37 H 0.06 0.92 5.64 -51.93 -0.29 0.63 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.39 10.07 7.33 -40.82 -0.30 9.77 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.40 6.03 6.63 -40.82 -0.27 5.76 16 45 H 0.14 1.61 6.39 -52.49 -0.34 1.28 16 46 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -33.02 405.38 -10.99 -44.00 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -7.78 Total: 16.95 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -4.38 Total: -3.09 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: 0.02 Total: -71.36 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.02 -10.99 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717532262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.554 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds