Wall clock time and date at job start Wed Apr 1 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 C 1.52995 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47319 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47151 * 54.99554 * 5 4 3 7 7 C 1.53000 * 109.47762 * 174.99824 * 5 4 3 8 8 N 1.46498 * 109.47463 * 174.99926 * 7 5 4 9 9 C 1.36932 * 119.99854 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00569 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00094 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99739 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00183 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47271 * 59.99816 * 13 11 9 15 15 H 1.48502 * 109.47241 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47129 * 299.99532 * 13 11 9 17 17 N 1.46499 * 109.47300 * 294.99979 * 5 4 3 18 18 C 1.34779 * 120.00297 * 84.99321 * 17 5 4 19 19 O 1.21593 * 119.99870 * 0.02562 * 18 17 5 20 20 C 1.47519 * 120.00363 * 180.02562 * 18 17 5 21 21 C 1.39440 * 120.24925 * 0.02768 * 20 18 17 22 22 C 1.38288 * 120.28110 * 179.70274 * 21 20 18 23 23 C 1.37878 * 120.72975 * 0.55690 * 22 21 20 24 24 C 1.39682 * 120.10418 * 359.43799 * 23 22 21 25 25 N 1.35864 * 133.51336 * 180.25065 * 24 23 22 26 26 C 1.30089 * 109.53241 * 180.02562 * 25 24 23 27 27 C 1.50699 * 124.96853 * 180.02562 * 26 25 24 28 28 N 1.36118 * 110.05458 * 359.97438 * 26 25 24 29 29 H 0.96996 * 126.30997 * 180.02562 * 28 26 25 30 30 C 1.37515 * 107.38108 * 0.02562 * 28 26 25 31 31 H 1.08996 * 109.47685 * 60.00038 * 1 2 3 32 32 H 1.09010 * 109.46864 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47429 * 299.99990 * 1 2 3 34 34 H 1.09002 * 109.47429 * 240.00010 * 2 1 3 35 35 H 1.08995 * 109.47207 * 119.99738 * 2 1 3 36 36 H 1.08994 * 109.47274 * 60.00154 * 3 2 1 37 37 H 1.09005 * 109.46492 * 299.99739 * 3 2 1 38 38 H 1.09002 * 109.47626 * 59.99787 * 4 3 2 39 39 H 1.08996 * 109.47322 * 299.99842 * 4 3 2 40 40 H 1.09001 * 109.46773 * 295.00275 * 7 5 4 41 41 H 1.09002 * 109.46653 * 54.99934 * 7 5 4 42 42 H 0.96999 * 119.99692 * 0.02562 * 8 7 5 43 43 H 0.97002 * 120.00023 * 180.02562 * 12 11 9 44 44 H 0.97000 * 120.00098 * 265.00365 * 17 5 4 45 45 H 1.07999 * 119.86170 * 359.97438 * 21 20 18 46 46 H 1.07997 * 119.63614 * 180.27031 * 22 21 20 47 47 H 1.08002 * 119.95074 * 179.72371 * 23 22 21 48 48 H 1.09002 * 109.46970 * 89.97672 * 27 26 25 49 49 H 1.09003 * 109.46685 * 209.97413 * 27 26 25 50 50 H 1.08998 * 109.47477 * 329.97182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 1 3.6455 3.4244 0.8405 7 6 5.6047 2.8871 0.1238 8 7 6.1028 4.2596 0.0034 9 6 7.4466 4.5098 0.0850 10 1 8.1393 3.6955 0.2385 11 6 7.9186 5.8103 -0.0286 12 7 7.0744 6.8029 -0.2141 13 14 9.7518 6.1516 0.0820 14 1 10.4580 5.4181 -0.9989 15 1 9.9940 7.6089 -0.0694 16 1 10.2608 5.6993 1.4017 17 7 3.6918 3.5397 -1.2531 18 6 2.4744 4.1065 -1.3680 19 8 1.6983 4.0750 -0.4325 20 6 2.0834 4.7653 -2.6287 21 6 2.9690 4.8040 -3.7051 22 6 2.6009 5.4160 -4.8893 23 6 1.3617 6.0058 -5.0220 24 6 0.4562 5.9805 -3.9588 25 7 -0.8051 6.4574 -3.7926 26 6 -1.2239 6.1713 -2.5947 27 6 -2.5776 6.5372 -2.0427 28 7 -0.2610 5.4922 -1.9133 29 1 -0.3246 5.1647 -1.0025 30 6 0.8186 5.3559 -2.7541 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6765 1.9563 -0.8901 38 1 3.9329 0.9289 -0.8908 39 1 3.9336 0.9287 0.8891 40 1 5.8902 2.4808 1.0942 41 1 6.0350 2.2737 -0.6678 42 1 5.4806 4.9910 -0.1334 43 1 7.4042 7.7117 -0.2939 44 1 4.3110 3.5651 -1.9994 45 1 3.9450 4.3504 -3.6150 46 1 3.2934 5.4361 -5.7178 47 1 1.0890 6.4841 -5.9511 48 1 -3.2855 5.7361 -2.2558 49 1 -2.5039 6.6797 -0.9646 50 1 -2.9226 7.4603 -2.5085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717532262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:59 Heat of formation + Delta-G solvation = 2.191097 kcal Electronic energy + Delta-G solvation = -30553.353140 eV Core-core repulsion = 26579.631514 eV Total energy + Delta-G solvation = -3973.721626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.25136 -41.05657 -38.37838 -37.78113 -36.27782 -35.15077 -34.16139 -33.17091 -32.28461 -31.95959 -30.76207 -28.70569 -28.58606 -25.94079 -24.79044 -23.77566 -23.38315 -22.16994 -21.89128 -21.79358 -21.36423 -19.38976 -18.80756 -18.57887 -17.58760 -17.25904 -16.82590 -16.60499 -16.25482 -16.05419 -15.82905 -15.36995 -15.24237 -15.16502 -15.03495 -14.49374 -14.20079 -14.19169 -13.98342 -13.74254 -13.53829 -13.49105 -13.17799 -13.03985 -12.89194 -12.84181 -12.75902 -12.54456 -12.50136 -12.17888 -12.03539 -11.90531 -11.85794 -11.71933 -11.43712 -11.39615 -11.34967 -10.97348 -10.81893 -10.01087 -9.40904 -9.20426 -9.00993 -7.93429 -5.23313 -0.46693 0.43416 1.41966 1.48884 1.51065 1.57295 1.92846 2.05944 2.18825 2.56622 2.85461 3.11915 3.40688 3.52685 3.62563 3.82977 3.91819 4.02122 4.05347 4.19145 4.22007 4.23101 4.29356 4.32538 4.36827 4.53821 4.55719 4.59099 4.68219 4.78488 4.82592 4.90194 4.91737 4.94178 4.97087 5.02850 5.05672 5.11756 5.20435 5.24998 5.29592 5.36965 5.38983 5.39418 5.51027 5.54326 5.60092 5.78293 6.26291 6.35117 6.54031 6.78080 7.17927 7.34129 8.07529 8.31146 9.29021 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.003650 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.455891 B = 7670.012319 C =10007.960238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.117 4.117 5 C 0.149 3.851 6 H 0.060 0.940 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.245 4.245 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.967 5.967 13 Si 0.972 3.028 14 H -0.274 1.274 15 H -0.300 1.300 16 H -0.281 1.281 17 N -0.697 5.697 18 C 0.561 3.439 19 O -0.573 6.573 20 C -0.149 4.149 21 C -0.059 4.059 22 C -0.130 4.130 23 C -0.043 4.043 24 C 0.011 3.989 25 N -0.520 5.520 26 C 0.280 3.720 27 C -0.074 4.074 28 N -0.584 5.584 29 H 0.433 0.567 30 C 0.078 3.922 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.407 0.593 45 H 0.148 0.852 46 H 0.170 0.830 47 H 0.155 0.845 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.045 -9.472 -6.801 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.079 0.921 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.377 4.377 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.618 5.618 13 Si 0.801 3.199 14 H -0.200 1.200 15 H -0.226 1.226 16 H -0.207 1.207 17 N -0.347 5.347 18 C 0.350 3.650 19 O -0.455 6.455 20 C -0.155 4.155 21 C -0.079 4.079 22 C -0.150 4.150 23 C -0.062 4.062 24 C -0.106 4.106 25 N -0.242 5.242 26 C 0.013 3.987 27 C -0.132 4.132 28 N -0.196 5.196 29 H 0.275 0.725 30 C -0.036 4.036 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.244 0.756 45 H 0.166 0.834 46 H 0.188 0.812 47 H 0.172 0.828 48 H 0.126 0.874 49 H 0.117 0.883 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.823 -9.126 -6.758 21.133 hybrid contribution 1.636 0.397 0.987 1.951 sum -16.187 -8.729 -5.771 19.275 Atomic orbital electron populations 1.21723 0.95866 1.01810 1.01112 1.21546 0.95989 0.96083 1.02286 1.21523 0.94702 0.96546 1.01235 1.21915 0.95992 0.94104 1.03588 1.21158 0.94229 0.94087 0.86129 0.92134 1.21121 0.90787 0.86903 0.99354 1.42514 1.04485 1.03748 1.87834 1.19589 0.85000 0.92674 1.40405 0.90279 1.25530 1.01691 0.95686 1.03477 1.69829 1.34719 0.99033 1.58195 0.85242 0.80416 0.76109 0.78133 1.20009 1.22609 1.20718 1.45783 1.15541 1.56390 1.17031 1.18231 0.82001 0.77608 0.87167 1.90637 1.52453 1.61378 1.41058 1.18988 0.93494 1.06957 0.96062 1.21491 0.98167 0.96503 0.91779 1.21204 0.96501 0.98819 0.98450 1.20801 0.91526 0.96844 0.97064 1.19481 0.93694 1.02751 0.94705 1.70459 1.10322 1.26215 1.17244 1.24607 0.94216 0.92148 0.87738 1.20607 0.85732 1.04768 1.02136 1.43204 1.12217 1.47919 1.16265 0.72496 1.18814 0.90088 1.02054 0.92660 0.93953 0.91540 0.93246 0.91764 0.91313 0.93534 0.93677 0.90465 0.89673 0.94439 0.94067 0.79461 0.94202 0.75603 0.83440 0.81216 0.82778 0.87401 0.88290 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.12 -2.49 5.93 30.60 0.18 -2.31 16 3 C -0.10 -2.65 3.82 30.59 0.12 -2.54 16 4 C -0.12 -2.95 4.89 30.59 0.15 -2.80 16 5 C 0.15 4.79 2.42 44.99 0.11 4.90 16 6 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 7 C 0.15 5.34 5.82 86.38 0.50 5.84 16 8 N -0.74 -36.04 5.43 -343.45 -1.87 -37.91 16 9 C -0.25 -13.15 9.99 84.04 0.84 -12.31 16 10 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 12 N -0.97 -58.60 13.06 21.65 0.28 -58.31 16 13 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 N -0.70 -22.08 4.42 -445.72 -1.97 -24.05 16 18 C 0.56 18.91 6.33 86.69 0.55 19.46 16 19 O -0.57 -20.93 12.42 -4.01 -0.05 -20.98 16 20 C -0.15 -4.67 5.88 -20.07 -0.12 -4.79 16 21 C -0.06 -1.56 9.53 22.57 0.22 -1.35 16 22 C -0.13 -2.89 9.99 22.20 0.22 -2.66 16 23 C -0.04 -1.06 10.09 22.53 0.23 -0.83 16 24 C 0.01 0.34 7.22 39.41 0.28 0.63 16 25 N -0.52 -15.30 11.28 -179.95 -2.03 -17.33 16 26 C 0.28 6.85 8.08 137.90 1.11 7.97 16 27 C -0.07 -0.98 10.51 71.24 0.75 -0.23 16 28 N -0.58 -16.19 6.00 -178.61 -1.07 -17.26 16 29 H 0.43 11.37 7.72 -92.71 -0.72 10.66 16 30 C 0.08 2.46 6.88 39.26 0.27 2.73 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.37 7.84 -2.39 -0.02 1.36 16 37 H 0.04 1.34 5.64 -2.38 -0.01 1.32 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.37 19.89 7.33 -92.71 -0.68 19.21 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.41 12.17 6.63 -92.71 -0.61 11.55 16 45 H 0.15 3.42 6.39 -2.91 -0.02 3.40 16 46 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 48 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.23 405.38 0.88 -71.34 By element: Atomic # 1 Polarization: 52.28 SS G_CDS: -1.03 Total: 51.25 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.59 Total: 6.02 kcal Atomic # 7 Polarization: -148.21 SS G_CDS: -6.66 Total: -154.86 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.23 0.88 -71.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717532262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.536 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds