Wall clock time and date at job start Wed Apr 1 2020 03:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47205 * 328.29043 * 3 2 1 5 5 C 1.34772 * 120.00144 * 89.99679 * 4 3 2 6 6 O 1.21281 * 119.99924 * 179.97438 * 5 4 3 7 7 C 1.50701 * 120.00088 * 0.02562 * 5 4 3 8 8 C 1.50694 * 109.47202 * 179.97438 * 7 5 4 9 9 N 1.30501 * 125.65270 * 304.97630 * 8 7 5 10 10 C 1.34128 * 109.25695 * 180.02562 * 9 8 7 11 11 C 1.34666 * 108.02310 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.59379 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47008 * 275.02874 * 12 11 10 14 14 N 1.35049 * 125.65043 * 124.99549 * 8 7 5 15 15 H 0.97006 * 126.39523 * 359.97438 * 14 8 7 16 16 C 1.46501 * 119.99473 * 270.00314 * 4 3 2 17 17 C 1.53032 * 109.46496 * 60.02591 * 16 4 3 18 18 C 1.53195 * 109.31469 * 178.59973 * 17 16 4 19 19 N 1.46928 * 108.76472 * 54.65347 * 18 17 16 20 20 C 1.36935 * 120.62980 * 126.36016 * 19 18 17 21 21 H 1.07998 * 119.99791 * 331.86500 * 20 19 18 22 22 C 1.38814 * 120.00019 * 151.85524 * 20 19 18 23 23 N 1.31619 * 119.99828 * 343.08083 * 22 20 19 24 24 Si 1.86796 * 119.99977 * 163.07506 * 22 20 19 25 25 H 1.48504 * 109.47073 * 60.00243 * 24 22 20 26 26 H 1.48501 * 109.47137 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47449 * 300.00563 * 24 22 20 28 28 C 1.46921 * 118.73700 * 306.38893 * 19 18 17 29 29 C 1.53041 * 109.45945 * 299.96774 * 16 4 3 30 30 H 4.40648 * 5.51378 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.47380 * 208.28703 * 3 2 1 32 32 H 1.09004 * 109.46997 * 88.28874 * 3 2 1 33 33 H 1.08996 * 109.47449 * 59.99177 * 7 5 4 34 34 H 1.09005 * 109.46987 * 299.99876 * 7 5 4 35 35 H 1.08001 * 125.98743 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47218 * 35.02422 * 12 11 10 37 37 H 1.08999 * 109.47474 * 155.03063 * 12 11 10 38 38 H 1.09003 * 109.47321 * 59.99809 * 13 12 11 39 39 H 1.09002 * 109.46964 * 179.97438 * 13 12 11 40 40 H 1.09002 * 109.47265 * 299.99883 * 13 12 11 41 41 H 1.09005 * 109.45715 * 180.02562 * 16 4 3 42 42 H 1.09001 * 109.49625 * 298.56245 * 17 16 4 43 43 H 1.08998 * 109.50081 * 58.65801 * 17 16 4 44 44 H 1.09003 * 109.59772 * 294.86681 * 18 17 16 45 45 H 1.08994 * 109.70211 * 174.50743 * 18 17 16 46 46 H 0.97004 * 119.99669 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.58524 * 293.81305 * 28 19 18 48 48 H 1.09007 * 109.70155 * 173.46424 * 28 19 18 49 49 H 1.09002 * 109.49875 * 301.34011 * 29 16 4 50 50 H 1.09000 * 109.50071 * 61.40363 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1742 0.7260 5 6 3.3600 -2.3281 0.0670 6 8 3.7651 -3.3005 0.6680 7 6 3.1093 -2.4097 -1.4167 8 6 3.4368 -3.7969 -1.9059 9 7 4.5751 -4.4131 -1.7398 10 6 4.5075 -5.6274 -2.3054 11 6 3.2806 -5.7693 -2.8420 12 6 2.7568 -6.9742 -3.5802 13 6 3.1683 -6.8895 -5.0515 14 7 2.6010 -4.6083 -2.5892 15 1 1.6893 -4.4062 -2.8516 16 6 3.3789 -1.0946 2.1684 17 6 2.0772 -0.7319 2.8866 18 6 2.3282 -0.6839 4.3970 19 7 3.4407 0.2385 4.6622 20 6 3.2955 1.2691 5.5521 21 1 2.3212 1.7033 5.7211 22 6 4.4005 1.7557 6.2370 23 7 5.5041 1.0410 6.2978 24 14 4.3213 3.4246 7.0722 25 1 3.2419 3.4170 8.0921 26 1 5.6217 3.7116 7.7293 27 1 4.0373 4.4724 6.0589 28 6 4.7117 0.0345 3.9539 29 6 4.4338 -0.0219 2.4485 30 1 -1.0499 -0.0004 0.0000 31 1 3.0090 0.9057 0.4870 32 1 3.0093 -0.0299 -1.0273 33 1 3.7394 -1.6849 -1.9321 34 1 2.0613 -2.1901 -1.6208 35 1 5.2985 -6.3624 -2.3268 36 1 3.1723 -7.8799 -3.1384 37 1 1.6696 -7.0003 -3.5080 38 1 4.2556 -6.8634 -5.1238 39 1 2.7898 -7.7613 -5.5853 40 1 2.7529 -5.9838 -5.4934 41 1 3.7370 -2.0587 2.5297 42 1 1.7322 0.2436 2.5438 43 1 1.3191 -1.4838 2.6677 44 1 2.5859 -1.6801 4.7566 45 1 1.4319 -0.3318 4.9075 46 1 6.2765 1.3812 6.7761 47 1 5.1638 -0.9031 4.2775 48 1 5.3894 0.8605 4.1698 49 1 5.3534 -0.2685 1.9179 50 1 4.0668 0.9468 2.1094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724046968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:06 Heat of formation + Delta-G solvation = 99.116162 kcal Electronic energy + Delta-G solvation = -30194.210087 eV Core-core repulsion = 26224.691447 eV Total energy + Delta-G solvation = -3969.518640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.26709 -40.00094 -37.43226 -35.63046 -34.47675 -33.17975 -32.61613 -32.22016 -31.37179 -30.05296 -29.51847 -27.34657 -27.07215 -24.95158 -23.65192 -22.28871 -22.16024 -21.14981 -20.78395 -19.58963 -19.17409 -18.00711 -17.62489 -17.04206 -16.66197 -16.01485 -15.53340 -15.13508 -14.80113 -14.73011 -14.53032 -13.90475 -13.83342 -13.76054 -13.63747 -13.49571 -13.31396 -13.08287 -12.87730 -12.77092 -12.63082 -12.30251 -12.21394 -11.93633 -11.56813 -11.50422 -11.14947 -10.96946 -10.70816 -10.55586 -10.42060 -10.18980 -10.14189 -10.07857 -10.05494 -9.91847 -9.76944 -9.65807 -9.45482 -8.58560 -8.37127 -8.33783 -6.65890 -5.76735 -3.19448 1.82225 2.42296 2.71659 2.73858 2.85282 3.06113 3.39256 3.45395 3.46149 3.49140 4.15369 4.28819 4.48977 4.51066 4.59591 4.61565 4.77423 4.91214 5.00282 5.15236 5.21366 5.26957 5.32744 5.37731 5.41370 5.47016 5.49618 5.53553 5.62410 5.64906 5.77695 5.84327 5.91160 6.10707 6.11527 6.23747 6.36157 6.53139 6.58489 6.65426 6.66423 6.80238 6.90816 6.99702 7.18149 7.36527 7.48353 7.54337 7.68913 7.81073 8.05075 8.31896 8.47013 9.23048 9.86234 10.43577 11.31906 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.002294 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.857287 B =12203.835540 C =12897.802140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.200 4.200 3 C 0.212 3.788 4 N -0.603 5.603 5 C 0.519 3.481 6 O -0.509 6.509 7 C -0.055 4.055 8 C 0.220 3.780 9 N -0.455 5.455 10 C -0.020 4.020 11 C -0.027 4.027 12 C -0.046 4.046 13 C -0.147 4.147 14 N -0.563 5.563 15 H 0.414 0.586 16 C 0.147 3.853 17 C -0.134 4.134 18 C 0.148 3.852 19 N -0.591 5.591 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.174 3.826 29 C -0.146 4.146 30 H 0.215 0.785 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.255 0.745 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -9.238 -23.994 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C 0.089 3.911 4 N -0.336 5.336 5 C 0.305 3.695 6 O -0.383 6.383 7 C -0.097 4.097 8 C -0.044 4.044 9 N -0.173 5.173 10 C -0.169 4.169 11 C -0.142 4.142 12 C -0.085 4.085 13 C -0.205 4.205 14 N -0.167 5.167 15 H 0.252 0.748 16 C 0.046 3.954 17 C -0.174 4.174 18 C 0.020 3.980 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.048 3.952 29 C -0.186 4.186 30 H 0.232 0.768 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.185 0.815 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.073 0.927 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.728 -9.444 -23.120 26.143 hybrid contribution -1.491 0.732 -0.100 1.664 sum -9.219 -8.712 -23.221 26.459 Atomic orbital electron populations 1.24896 0.95872 0.99508 1.00713 1.23618 0.94936 1.01137 1.00456 1.18442 0.83635 0.91045 0.97995 1.48232 1.65296 1.10260 1.09814 1.20056 0.78028 0.82947 0.88466 1.90774 1.43599 1.35247 1.68654 1.20011 1.03851 0.90986 0.94849 1.22241 0.87444 0.94934 0.99741 1.70264 1.21479 1.06327 1.19265 1.22118 0.96310 0.96114 1.02315 1.21204 0.95013 0.89976 1.07990 1.19969 1.00498 0.93368 0.94628 1.21779 1.02240 1.01659 0.94812 1.43075 1.15031 1.13750 1.44860 0.74847 1.21228 0.96220 1.01329 0.76642 1.22349 0.95772 1.00566 0.98733 1.20869 0.92317 0.93475 0.91292 1.44070 1.09372 1.30977 1.46994 1.19119 0.94757 1.08024 1.16364 0.91781 1.25060 0.97484 0.99050 0.98043 1.70024 1.03913 1.35966 1.44670 0.86373 0.76776 0.84387 0.79226 1.20929 1.21646 1.21075 1.20752 0.88693 1.00928 0.84868 1.22584 0.97002 0.97312 1.01731 0.76819 0.87148 0.88447 0.86390 0.87845 0.81540 0.89421 0.91394 0.92006 0.92112 0.92966 0.88481 0.92027 0.93292 0.96312 0.92599 0.93528 0.96089 0.89109 0.92702 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.20 -2.26 11.92 -37.13 -0.44 -2.70 16 3 C 0.21 2.33 5.15 -6.83 -0.04 2.30 16 4 N -0.60 -8.71 2.37 -169.37 -0.40 -9.11 16 5 C 0.52 7.88 7.66 -10.99 -0.08 7.80 16 6 O -0.51 -10.15 14.88 5.56 0.08 -10.07 16 7 C -0.06 -0.59 4.88 -29.04 -0.14 -0.73 16 8 C 0.22 2.80 6.96 -155.41 -1.08 1.71 16 9 N -0.46 -7.08 10.58 -10.82 -0.11 -7.19 16 10 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 11 C -0.03 -0.26 6.49 -81.60 -0.53 -0.79 16 12 C -0.05 -0.29 6.49 -27.88 -0.18 -0.47 16 13 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 14 N -0.56 -5.43 6.15 -6.54 -0.04 -5.47 16 15 H 0.41 2.57 8.96 -40.82 -0.37 2.20 16 16 C 0.15 2.63 2.48 -67.89 -0.17 2.46 16 17 C -0.13 -2.41 4.73 -26.61 -0.13 -2.54 16 18 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 19 N -0.59 -14.84 2.99 -172.32 -0.52 -15.36 16 20 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 21 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 24 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.17 4.18 5.30 -3.72 -0.02 4.16 16 29 C -0.15 -2.78 5.31 -26.61 -0.14 -2.92 16 30 H 0.21 1.49 7.80 -54.10 -0.42 1.07 16 31 H 0.11 1.26 6.46 -51.93 -0.34 0.93 16 32 H 0.10 0.74 6.44 -51.93 -0.33 0.40 16 33 H 0.12 0.99 7.40 -51.93 -0.38 0.60 16 34 H 0.10 0.80 7.95 -51.93 -0.41 0.39 16 35 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 2.01 6.90 -51.93 -0.36 1.66 16 42 H 0.06 1.11 7.02 -51.93 -0.36 0.74 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 2.41 6.06 -51.92 -0.31 2.10 16 49 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -35.92 405.60 -9.59 -45.51 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.83 Total: 2.53 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.48 Total: 2.07 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.45 Total: -62.78 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.92 -9.59 -45.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724046968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.628 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds