Wall clock time and date at job start Wed Apr 1 2020 03:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21567 * 119.99951 * 0.02562 * 18 17 5 20 20 C 1.47679 * 119.99759 * 179.97438 * 18 17 5 21 21 C 1.40141 * 119.90478 * 359.72934 * 20 18 17 22 22 C 1.36433 * 120.45793 * 179.75239 * 21 20 18 23 23 C 1.39067 * 120.14354 * 0.52048 * 22 21 20 24 24 C 1.40684 * 120.14975 * 359.74116 * 23 22 21 25 25 C 1.39122 * 119.90259 * 180.02562 * 20 18 17 26 26 N 1.35868 * 106.93370 * 180.02562 * 24 23 22 27 27 C 1.30068 * 109.56192 * 359.97438 * 26 24 23 28 28 N 1.36090 * 110.12905 * 0.02562 * 27 26 24 29 29 C 1.46503 * 126.30519 * 179.97438 * 28 27 26 30 30 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 31 31 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.08003 * 119.76488 * 0.02562 * 21 20 18 45 45 H 1.07998 * 119.92139 * 180.25882 * 22 21 20 46 46 H 1.07994 * 120.24307 * 359.95628 * 25 20 18 47 47 H 1.08000 * 124.93568 * 179.97438 * 27 26 24 48 48 H 1.09006 * 109.46469 * 89.97868 * 29 28 27 49 49 H 1.08997 * 109.47090 * 209.97270 * 29 28 27 50 50 H 1.08994 * 109.47190 * 329.97695 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 9.2117 6.0486 -0.0358 13 14 6.7217 7.2175 0.3007 14 1 6.5135 7.4247 1.7564 15 1 7.2750 8.4570 -0.3015 16 1 5.4241 6.8910 -0.3434 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6983 4.0747 0.4304 20 6 2.0829 4.7682 2.6271 21 6 2.9766 4.7992 3.7061 22 6 2.6285 5.4106 4.8750 23 6 1.3762 6.0002 5.0088 24 6 0.4646 5.9736 3.9376 25 6 0.8256 5.3524 2.7430 26 7 -0.6561 6.6182 4.3555 27 6 -0.4931 7.0256 5.5800 28 7 0.7411 6.6717 6.0310 29 6 1.2931 6.9529 7.3586 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 9.5419 6.9570 0.0467 43 1 4.3109 3.5669 1.9976 44 1 3.9493 4.3397 3.6100 45 1 3.3256 5.4330 5.6996 46 1 0.1347 5.3254 1.9134 47 1 -1.2299 7.5669 6.1549 48 1 1.0479 6.1339 8.0348 49 1 2.3761 7.0538 7.2878 50 1 0.8660 7.8800 7.7407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725231831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:05 Heat of formation + Delta-G solvation = 41.718452 kcal Electronic energy + Delta-G solvation = -30230.872135 eV Core-core repulsion = 26258.864543 eV Total energy + Delta-G solvation = -3972.007592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.40748 -40.00306 -37.43795 -36.34390 -34.98509 -34.58996 -33.60344 -31.65990 -30.87918 -30.53235 -29.45238 -27.61915 -27.30562 -24.38645 -23.88560 -22.97127 -21.95718 -21.02510 -20.91626 -20.70384 -20.20237 -18.12295 -17.55911 -17.41488 -16.63490 -16.23672 -16.14145 -15.46829 -14.98060 -14.73278 -14.47120 -14.29758 -14.16189 -13.88910 -13.76855 -13.64857 -13.40248 -13.30516 -13.04447 -12.86863 -12.74139 -12.71517 -12.17059 -12.04862 -11.74625 -11.71367 -11.38440 -11.33242 -10.96579 -10.86583 -10.84215 -10.66532 -10.32383 -10.28246 -10.23357 -10.11350 -9.70354 -9.62313 -8.94971 -8.77899 -8.57167 -8.34842 -7.27779 -5.80022 -3.15974 0.73306 0.91296 2.26164 2.49283 3.02487 3.31629 3.36084 3.43113 3.45252 3.86977 4.03361 4.22530 4.26103 4.57119 4.65465 4.70070 4.77868 4.84635 4.93955 5.07557 5.09940 5.13541 5.16119 5.21590 5.33842 5.40785 5.43707 5.50859 5.52412 5.74197 5.80941 5.86133 5.89646 5.93644 6.02374 6.10549 6.13728 6.16905 6.19760 6.24002 6.24862 6.40070 6.46965 6.52675 6.59132 6.66485 6.77879 6.87364 7.56248 7.76268 7.95816 8.38555 8.44180 9.17959 9.90316 10.09771 11.38138 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006803 B = 0.004182 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4114.785281 B = 6693.292758 C =10011.920244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.134 3.866 6 H 0.089 0.911 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.246 4.246 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.879 3.121 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.276 1.276 17 N -0.710 5.710 18 C 0.561 3.439 19 O -0.536 6.536 20 C -0.143 4.143 21 C -0.067 4.067 22 C -0.116 4.116 23 C 0.066 3.934 24 C 0.032 3.968 25 C 0.006 3.994 26 N -0.487 5.487 27 C 0.255 3.745 28 N -0.497 5.497 29 C 0.078 3.922 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.402 0.598 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.144 0.856 47 H 0.215 0.785 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.972 -4.479 15.373 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.030 3.970 6 H 0.107 0.893 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.375 4.375 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.580 5.580 13 Si 0.709 3.291 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.202 1.202 17 N -0.361 5.361 18 C 0.348 3.652 19 O -0.414 6.414 20 C -0.149 4.149 21 C -0.087 4.087 22 C -0.137 4.137 23 C -0.044 4.044 24 C -0.085 4.085 25 C -0.015 4.015 26 N -0.205 5.205 27 C -0.031 4.031 28 N -0.187 5.187 29 C -0.064 4.064 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.238 0.762 44 H 0.155 0.845 45 H 0.146 0.854 46 H 0.162 0.838 47 H 0.231 0.769 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.919 -4.409 14.273 24.899 hybrid contribution 0.357 1.211 1.280 1.798 sum -19.562 -3.198 15.553 25.195 Atomic orbital electron populations 1.21743 0.96268 1.00824 1.01891 1.21566 0.95623 0.97695 1.01349 1.21679 0.94689 0.95417 1.03283 1.21966 0.96169 0.95961 1.02387 1.21397 0.96025 0.92856 0.86731 0.89273 1.20951 0.89031 0.88261 0.99642 1.42717 1.05303 1.02605 1.89522 1.19049 0.81957 0.94280 1.42255 0.89109 1.24635 0.95440 0.96865 1.01836 1.69695 1.11391 1.20008 1.56950 0.86633 0.81137 0.83280 0.78059 1.21035 1.21667 1.20210 1.45944 1.15878 1.57025 1.17292 1.17985 0.82031 0.78136 0.87018 1.90767 1.51424 1.59400 1.39820 1.19694 0.95412 1.04676 0.95069 1.20825 0.99011 0.97303 0.91557 1.19565 0.93451 1.01448 0.99266 1.19056 0.96209 0.99705 0.89468 1.18890 0.91240 1.03627 0.94769 1.20371 0.94771 0.91533 0.94795 1.70478 1.24465 1.15595 1.09977 1.25376 0.86463 0.99325 0.91950 1.45301 1.14307 1.46411 1.12701 1.22016 1.00922 1.02690 0.80759 0.92786 0.93344 0.92966 0.92409 0.92616 0.91718 0.91493 0.90948 0.91797 0.93972 0.94905 0.80364 0.93035 0.76186 0.84505 0.85433 0.83806 0.76891 0.90565 0.89563 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.15 0.37 -1.24 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16 3 C -0.11 -1.50 3.81 -26.73 -0.10 -1.61 16 4 C -0.13 -1.63 4.89 -26.73 -0.13 -1.76 16 5 C 0.13 2.10 2.42 -67.93 -0.16 1.94 16 6 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 7 C 0.15 2.71 5.82 -4.04 -0.02 2.68 16 8 N -0.76 -17.41 5.24 -59.91 -0.31 -17.73 16 9 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 10 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -29.02 13.97 55.49 0.78 -28.25 16 13 Si 0.88 22.31 27.74 -169.99 -4.71 17.60 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 16 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 17 N -0.71 -10.66 4.42 -54.80 -0.24 -10.90 16 18 C 0.56 8.95 6.33 -12.40 -0.08 8.87 16 19 O -0.54 -9.77 13.45 5.31 0.07 -9.69 16 20 C -0.14 -2.06 5.87 -105.00 -0.62 -2.67 16 21 C -0.07 -0.82 9.47 -39.52 -0.37 -1.19 16 22 C -0.12 -1.29 9.97 -39.93 -0.40 -1.69 16 23 C 0.07 0.78 6.87 -83.95 -0.58 0.21 16 24 C 0.03 0.45 7.22 -84.72 -0.61 -0.16 16 25 C 0.01 0.08 9.64 -38.82 -0.37 -0.29 16 26 N -0.49 -6.41 11.28 -12.06 -0.14 -6.55 16 27 C 0.25 2.27 12.50 -89.77 -1.12 1.15 16 28 N -0.50 -4.34 3.20 -123.13 -0.39 -4.73 16 29 C 0.08 0.32 11.17 59.85 0.67 0.99 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.95 5.65 -51.93 -0.29 0.66 16 36 H 0.07 0.99 7.84 -51.93 -0.41 0.59 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.46 5.20 -40.82 -0.21 8.25 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.40 5.55 6.60 -40.82 -0.27 5.28 16 44 H 0.14 1.46 6.36 -52.48 -0.33 1.13 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.14 2.17 7.63 -52.49 -0.40 1.77 16 47 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -35.91 404.86 -10.62 -46.53 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.82 Total: 10.77 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.95 Total: -3.15 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.31 Total: -68.15 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.91 -10.62 -46.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.246 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds