Wall clock time and date at job start Wed Apr 1 2020 03:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21567 * 119.99951 * 0.02562 * 18 17 5 20 20 C 1.47679 * 119.99759 * 179.97438 * 18 17 5 21 21 C 1.40141 * 119.90478 * 359.72934 * 20 18 17 22 22 C 1.36433 * 120.45793 * 179.75239 * 21 20 18 23 23 C 1.39067 * 120.14354 * 0.52048 * 22 21 20 24 24 C 1.40684 * 120.14975 * 359.74116 * 23 22 21 25 25 C 1.39122 * 119.90259 * 180.02562 * 20 18 17 26 26 N 1.35868 * 106.93370 * 180.02562 * 24 23 22 27 27 C 1.30068 * 109.56192 * 359.97438 * 26 24 23 28 28 N 1.36090 * 110.12905 * 0.02562 * 27 26 24 29 29 C 1.46503 * 126.30519 * 179.97438 * 28 27 26 30 30 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 31 31 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.08003 * 119.76488 * 0.02562 * 21 20 18 45 45 H 1.07998 * 119.92139 * 180.25882 * 22 21 20 46 46 H 1.07994 * 120.24307 * 359.95628 * 25 20 18 47 47 H 1.08000 * 124.93568 * 179.97438 * 27 26 24 48 48 H 1.09006 * 109.46469 * 89.97868 * 29 28 27 49 49 H 1.08997 * 109.47090 * 209.97270 * 29 28 27 50 50 H 1.08994 * 109.47190 * 329.97695 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 9.2117 6.0486 -0.0358 13 14 6.7217 7.2175 0.3007 14 1 6.5135 7.4247 1.7564 15 1 7.2750 8.4570 -0.3015 16 1 5.4241 6.8910 -0.3434 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6983 4.0747 0.4304 20 6 2.0829 4.7682 2.6271 21 6 2.9766 4.7992 3.7061 22 6 2.6285 5.4106 4.8750 23 6 1.3762 6.0002 5.0088 24 6 0.4646 5.9736 3.9376 25 6 0.8256 5.3524 2.7430 26 7 -0.6561 6.6182 4.3555 27 6 -0.4931 7.0256 5.5800 28 7 0.7411 6.6717 6.0310 29 6 1.2931 6.9529 7.3586 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 9.5419 6.9570 0.0467 43 1 4.3109 3.5669 1.9976 44 1 3.9493 4.3397 3.6100 45 1 3.3256 5.4330 5.6996 46 1 0.1347 5.3254 1.9134 47 1 -1.2299 7.5669 6.1549 48 1 1.0479 6.1339 8.0348 49 1 2.3761 7.0538 7.2878 50 1 0.8660 7.8800 7.7407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725231831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:04 Heat of formation + Delta-G solvation = 19.485333 kcal Electronic energy + Delta-G solvation = -30231.836235 eV Core-core repulsion = 26258.864543 eV Total energy + Delta-G solvation = -3972.971692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.20951 -41.21893 -38.50420 -37.60344 -36.32253 -35.33837 -35.10863 -33.37651 -32.22860 -31.52398 -30.37469 -28.95737 -27.93460 -25.83430 -24.95936 -23.86602 -23.53551 -22.22604 -21.78209 -21.73143 -21.40834 -19.83474 -18.85867 -18.17761 -17.76158 -17.27589 -16.85181 -16.73241 -16.45334 -16.01331 -15.82327 -15.57610 -15.13883 -14.93508 -14.80201 -14.74419 -14.52969 -14.36254 -14.12141 -14.02761 -13.90667 -13.66923 -13.40533 -13.28819 -12.96543 -12.89789 -12.66850 -12.62628 -12.53659 -12.17751 -11.96551 -11.86836 -11.83196 -11.44763 -11.43369 -11.34182 -11.09285 -11.03748 -10.91861 -10.02042 -9.49666 -9.30991 -9.23324 -8.03566 -5.35882 -0.23853 0.00409 1.33788 1.38029 1.42973 1.64718 1.68141 1.94473 2.14209 2.45013 2.83387 3.21491 3.28859 3.46880 3.54702 3.74722 3.87094 3.88857 3.95584 4.09037 4.14752 4.21428 4.29179 4.29862 4.34207 4.40748 4.47092 4.52974 4.59440 4.62826 4.74305 4.85207 4.92927 4.94427 4.99424 5.00070 5.09075 5.14698 5.20115 5.23322 5.25763 5.32160 5.33601 5.42151 5.57560 5.61046 5.67090 5.77075 6.13888 6.20524 6.55930 6.77892 7.06739 7.22578 7.82844 8.00603 9.17895 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006803 B = 0.004182 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4114.785281 B = 6693.292758 C =10011.920244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.066 0.934 7 C 0.149 3.851 8 N -0.758 5.758 9 C -0.228 4.228 10 H 0.066 0.934 11 C -0.053 4.053 12 N -0.979 5.979 13 Si 0.941 3.059 14 H -0.269 1.269 15 H -0.298 1.298 16 H -0.272 1.272 17 N -0.705 5.705 18 C 0.560 3.440 19 O -0.567 6.567 20 C -0.154 4.154 21 C -0.077 4.077 22 C -0.105 4.105 23 C 0.058 3.942 24 C 0.008 3.992 25 C -0.017 4.017 26 N -0.539 5.539 27 C 0.274 3.726 28 N -0.491 5.491 29 C 0.069 3.931 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.363 0.637 42 H 0.258 0.742 43 H 0.409 0.591 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.123 0.877 47 H 0.263 0.737 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.003 -4.610 18.391 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.144 4.144 4 C -0.156 4.156 5 C 0.039 3.961 6 H 0.084 0.916 7 C 0.022 3.978 8 N -0.404 5.404 9 C -0.358 4.358 10 H 0.084 0.916 11 C -0.245 4.245 12 N -0.630 5.630 13 Si 0.769 3.231 14 H -0.195 1.195 15 H -0.225 1.225 16 H -0.197 1.197 17 N -0.357 5.357 18 C 0.349 3.651 19 O -0.448 6.448 20 C -0.159 4.159 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.054 4.054 24 C -0.109 4.109 25 C -0.037 4.037 26 N -0.258 5.258 27 C -0.012 4.012 28 N -0.180 5.180 29 C -0.071 4.071 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.196 0.804 42 H 0.067 0.933 43 H 0.247 0.753 44 H 0.170 0.830 45 H 0.178 0.822 46 H 0.141 0.859 47 H 0.279 0.721 48 H 0.111 0.889 49 H 0.109 0.891 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.969 -4.573 17.339 27.590 hybrid contribution 0.609 1.226 0.426 1.434 sum -20.360 -3.346 17.765 27.227 Atomic orbital electron populations 1.21741 0.96079 1.01757 1.01140 1.21538 0.95812 0.96103 1.02357 1.21558 0.94875 0.96584 1.01371 1.21913 0.95778 0.94086 1.03833 1.21226 0.94007 0.94456 0.86386 0.91602 1.21116 0.90635 0.85862 1.00152 1.42737 1.03582 1.04698 1.89342 1.19059 0.83539 0.93449 1.39801 0.91558 1.25291 0.96814 0.99394 1.02963 1.69845 1.13393 1.20369 1.59404 0.85630 0.78975 0.79827 0.78626 1.19467 1.22482 1.19744 1.45873 1.15790 1.56804 1.17197 1.18268 0.81811 0.77747 0.87312 1.90745 1.52322 1.60624 1.41081 1.19594 0.95897 1.05367 0.95062 1.20983 0.99234 0.98080 0.91438 1.19890 0.93509 0.99636 0.99504 1.19241 0.96227 0.99969 0.89936 1.19056 0.92517 1.04133 0.95214 1.20282 0.94993 0.93324 0.95146 1.70446 1.25088 1.17748 1.12507 1.26354 0.86945 0.97015 0.90860 1.45644 1.13918 1.44937 1.13504 1.22419 1.01360 1.04822 0.78464 0.93493 0.91515 0.93844 0.91338 0.91534 0.93452 0.93714 0.89597 0.90126 0.93759 0.93242 0.80388 0.93335 0.75321 0.83017 0.82167 0.85929 0.72098 0.88934 0.89122 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.91 71.98 0.71 -2.40 16 2 C -0.12 -2.55 5.93 30.59 0.18 -2.37 16 3 C -0.11 -2.81 3.81 30.59 0.12 -2.70 16 4 C -0.12 -2.89 4.89 30.59 0.15 -2.74 16 5 C 0.14 4.44 2.42 44.99 0.11 4.55 16 6 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 7 C 0.15 5.25 5.82 86.38 0.50 5.75 16 8 N -0.76 -34.40 5.24 -343.46 -1.80 -36.20 16 9 C -0.23 -12.60 10.47 84.03 0.88 -11.72 16 10 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 11 C -0.05 -3.06 5.50 84.86 0.47 -2.60 16 12 N -0.98 -61.83 13.97 21.65 0.30 -61.52 16 13 Si 0.94 46.25 27.74 68.60 1.90 48.16 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 16 H -0.27 -12.99 6.52 99.48 0.65 -12.35 16 17 N -0.70 -20.94 4.42 -445.55 -1.97 -22.91 16 18 C 0.56 18.37 6.33 86.74 0.55 18.92 16 19 O -0.57 -21.82 13.45 -3.93 -0.05 -21.88 16 20 C -0.15 -4.53 5.87 -20.11 -0.12 -4.64 16 21 C -0.08 -1.80 9.47 22.31 0.21 -1.59 16 22 C -0.10 -2.09 9.97 22.05 0.22 -1.87 16 23 C 0.06 1.29 6.87 39.00 0.27 1.55 16 24 C 0.01 0.23 7.22 39.40 0.28 0.51 16 25 C -0.02 -0.53 9.64 22.76 0.22 -0.31 16 26 N -0.54 -13.94 11.28 -192.08 -2.17 -16.11 16 27 C 0.27 4.13 12.50 180.05 2.25 6.38 16 28 N -0.49 -7.02 3.20 -543.46 -1.74 -8.76 16 29 C 0.07 0.26 11.17 127.77 1.43 1.69 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.42 5.65 -2.39 -0.01 1.41 16 36 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.36 16.58 5.20 -92.71 -0.48 16.10 16 42 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 43 H 0.41 10.84 6.60 -92.71 -0.61 10.23 16 44 H 0.15 2.96 6.36 -2.91 -0.02 2.95 16 45 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 46 H 0.12 4.15 7.63 -2.91 -0.02 4.12 16 47 H 0.26 0.88 8.06 -2.91 -0.02 0.86 16 48 H 0.09 0.11 8.14 -2.38 -0.02 0.09 16 49 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -81.17 404.86 2.71 -78.46 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.20 Total: 34.35 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 8.43 Total: 6.42 kcal Atomic # 7 Polarization: -138.13 SS G_CDS: -7.37 Total: -145.50 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.90 Total: 48.16 kcal Total: -81.17 2.71 -78.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.946 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds