Wall clock time and date at job start Wed Apr 1 2020 04:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 C 1.53000 * 109.46923 * 240.00113 * 2 1 3 5 5 C 1.52996 * 109.47473 * 120.00225 * 2 1 3 6 6 H 1.09000 * 109.47145 * 299.99572 * 5 2 1 7 7 C 1.53006 * 109.47102 * 59.99809 * 5 2 1 8 8 N 1.46504 * 109.46883 * 175.00371 * 7 5 2 9 9 C 1.36936 * 119.99477 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00404 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99891 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47327 * 59.99747 * 13 11 9 15 15 H 1.48505 * 109.47059 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47290 * 299.99991 * 13 11 9 17 17 N 1.46498 * 109.47308 * 179.97438 * 5 2 1 18 18 C 1.34783 * 120.00018 * 85.00189 * 17 5 2 19 19 O 1.21285 * 119.99349 * 359.97438 * 18 17 5 20 20 C 1.50698 * 120.00276 * 179.97438 * 18 17 5 21 21 C 1.50701 * 109.47201 * 179.97438 * 20 18 17 22 22 N 1.30242 * 126.10314 * 90.02164 * 21 20 18 23 23 N 1.39876 * 110.08400 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.46679 * 179.97438 * 23 22 21 25 25 C 1.37039 * 109.07589 * 0.02562 * 23 22 21 26 26 C 1.39291 * 133.85277 * 180.02562 * 25 23 22 27 27 C 1.36592 * 119.85144 * 179.97438 * 26 25 23 28 28 C 1.38969 * 120.81803 * 0.02562 * 27 26 25 29 29 C 1.36462 * 120.62627 * 0.02562 * 28 27 26 30 30 C 1.39950 * 119.63513 * 359.66087 * 29 28 27 31 31 H 1.09006 * 109.47004 * 300.00000 * 1 2 3 32 32 H 1.08998 * 109.47374 * 59.99604 * 1 2 3 33 33 H 1.09002 * 109.47721 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47312 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46984 * 300.00308 * 3 2 1 36 36 H 1.08993 * 109.47243 * 60.00129 * 3 2 1 37 37 H 1.09002 * 109.47044 * 299.99923 * 4 2 1 38 38 H 1.09004 * 109.47376 * 59.99482 * 4 2 1 39 39 H 1.08996 * 109.47552 * 179.97438 * 4 2 1 40 40 H 1.09001 * 109.47002 * 294.99868 * 7 5 2 41 41 H 1.08993 * 109.46955 * 55.00306 * 7 5 2 42 42 H 0.96992 * 119.99966 * 359.97438 * 8 7 5 43 43 H 0.96993 * 120.00031 * 180.02562 * 12 11 9 44 44 H 0.96995 * 120.00562 * 265.00143 * 17 5 2 45 45 H 1.08995 * 109.47082 * 300.00227 * 20 18 17 46 46 H 1.09002 * 109.46986 * 59.99783 * 20 18 17 47 47 H 1.07994 * 120.07234 * 359.97438 * 26 25 23 48 48 H 1.07996 * 119.59371 * 179.97438 * 27 26 25 49 49 H 1.08001 * 119.68847 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.18340 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6768 -0.2074 2.1392 7 6 1.5300 -2.1638 1.2491 8 7 2.1142 -2.8883 2.3806 9 6 1.8011 -4.2056 2.5852 10 1 1.1232 -4.7103 1.9128 11 6 2.3550 -4.8922 3.6569 12 7 3.1815 -4.2773 4.4762 13 14 1.9274 -6.6890 3.9365 14 1 2.3351 -7.4851 2.7511 15 1 2.6447 -7.1874 5.1375 16 1 0.4630 -6.8230 4.1429 17 7 3.5050 -0.7218 1.2488 18 6 4.1794 0.3359 1.7419 19 8 3.5733 1.2882 2.1854 20 6 5.6864 0.3352 1.7421 21 6 6.1893 1.6231 2.3416 22 7 6.4454 1.8348 3.6010 23 7 6.8946 3.1466 3.7858 24 1 7.1476 3.5403 4.6354 25 6 6.9187 3.7866 2.5743 26 6 7.2713 5.0717 2.1687 27 6 7.1848 5.4160 0.8497 28 6 6.7474 4.4989 -0.0983 29 6 6.3943 3.2332 0.2699 30 6 6.4806 2.8542 1.6144 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6765 -1.7489 -1.2493 38 1 1.6765 -0.2074 -2.1393 39 1 3.1298 -0.7209 -1.2496 40 1 0.4437 -2.1651 1.3388 41 1 1.8183 -2.6511 0.3178 42 1 2.7232 -2.4351 2.9843 43 1 3.5689 -4.7571 5.2248 44 1 3.9897 -1.4832 0.8938 45 1 6.0492 -0.5066 2.3318 46 1 6.0498 0.2451 0.7184 47 1 7.6124 5.7941 2.8954 48 1 7.4588 6.4136 0.5399 49 1 6.6856 4.7908 -1.1363 50 1 6.0550 2.5263 -0.4728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725757002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:26 Heat of formation + Delta-G solvation = 51.118699 kcal Electronic energy + Delta-G solvation = -30754.719914 eV Core-core repulsion = 26783.119948 eV Total energy + Delta-G solvation = -3971.599966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37574 -39.92903 -37.51982 -37.12760 -34.40323 -33.39128 -33.10196 -31.09608 -30.45928 -29.81811 -28.55362 -27.54785 -27.09954 -26.39902 -23.74769 -23.13907 -22.29066 -21.65455 -20.95938 -19.56330 -18.50633 -17.94582 -17.25237 -16.98973 -16.66369 -15.77305 -15.53616 -15.36221 -14.84738 -14.60271 -14.47877 -14.09315 -13.95609 -13.89104 -13.53124 -13.44297 -13.23159 -12.98329 -12.70336 -12.25503 -12.12882 -12.05142 -11.98459 -11.81300 -11.75560 -11.34097 -11.21275 -11.17693 -11.04513 -10.79182 -10.72825 -10.69201 -10.46897 -10.28670 -10.21658 -9.91292 -9.72277 -9.46201 -8.87684 -8.76275 -8.51933 -8.08062 -6.93100 -5.76287 -3.05942 0.84939 1.40162 2.35766 2.62302 2.98435 3.43333 3.48160 3.49239 3.54675 3.75353 4.34466 4.44359 4.57423 4.61949 4.82236 4.97789 4.99478 5.07522 5.13666 5.22640 5.25801 5.32980 5.41747 5.55346 5.59250 5.61523 5.70000 5.75795 5.81937 5.85224 5.93551 5.95716 6.07482 6.12307 6.15631 6.19436 6.21038 6.34463 6.34720 6.37712 6.49851 6.50169 6.54927 6.68665 6.73082 6.78094 7.02203 7.22804 7.57832 7.68548 7.91403 8.41548 8.60710 9.53197 10.09924 10.45179 11.45787 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003034 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.765556 B = 9225.248986 C =10970.644302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.128 4.128 4 C -0.141 4.141 5 C 0.151 3.849 6 H 0.085 0.915 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.707 5.707 18 C 0.521 3.479 19 O -0.532 6.532 20 C -0.069 4.069 21 C 0.129 3.871 22 N -0.232 5.232 23 N -0.510 5.510 24 H 0.439 0.561 25 C 0.129 3.871 26 C -0.145 4.145 27 C -0.072 4.072 28 C -0.164 4.164 29 C -0.035 4.035 30 C -0.163 4.163 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.404 0.596 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.125 0.875 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 17.894 -11.903 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.185 4.185 4 C -0.198 4.198 5 C 0.046 3.954 6 H 0.103 0.897 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.358 5.358 18 C 0.305 3.695 19 O -0.409 6.409 20 C -0.110 4.110 21 C -0.050 4.050 22 N -0.046 5.046 23 N -0.224 5.224 24 H 0.283 0.717 25 C 0.013 3.987 26 C -0.167 4.167 27 C -0.093 4.093 28 C -0.184 4.184 29 C -0.055 4.055 30 C -0.170 4.170 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.239 0.761 45 H 0.137 0.863 46 H 0.131 0.869 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.143 0.857 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.234 17.893 -10.364 21.907 hybrid contribution 0.330 -0.648 0.118 0.736 sum 7.563 17.245 -10.246 21.438 Atomic orbital electron populations 1.21885 0.94318 1.02232 1.01425 1.20895 0.95672 0.95880 0.95328 1.21865 1.01014 0.94772 1.00835 1.21905 1.00908 1.00572 0.96394 1.21245 0.79093 0.97426 0.97627 0.89684 1.21094 0.96605 0.88659 0.92237 1.42354 1.55407 1.09718 1.30111 1.19150 1.22478 0.87005 1.08716 0.91279 1.24742 0.99888 0.98197 0.97946 1.69657 1.34480 1.35990 1.17686 0.86286 0.77707 0.85096 0.77163 1.21297 1.21746 1.21324 1.45859 1.07371 1.19834 1.62710 1.20029 0.88736 0.82923 0.77785 1.90721 1.69853 1.34534 1.45775 1.20094 0.93818 0.94048 1.03075 1.22670 0.97996 0.94432 0.89858 1.76626 1.14502 0.95566 1.17860 1.45892 1.60358 1.08516 1.07593 0.71675 1.18855 0.98861 0.94395 0.86631 1.19799 1.06833 0.93170 0.96900 1.20681 0.97169 0.99348 0.92113 1.20623 1.04189 0.93789 0.99750 1.20344 0.95589 0.96228 0.93356 1.19717 1.09251 0.93474 0.94601 0.92654 0.92959 0.91923 0.92859 0.94134 0.92158 0.91941 0.93292 0.92832 0.94860 0.95373 0.78008 0.93450 0.76140 0.86310 0.86881 0.85877 0.85561 0.85738 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.12 37.15 0.30 -1.49 16 2 C -0.08 -1.02 0.62 -154.52 -0.10 -1.12 16 3 C -0.13 -1.76 7.00 37.16 0.26 -1.50 16 4 C -0.14 -1.67 7.97 37.16 0.30 -1.37 16 5 C 0.15 2.47 1.69 -67.93 -0.11 2.36 16 6 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 7 C 0.14 2.68 5.10 -4.04 -0.02 2.66 16 8 N -0.73 -17.79 5.43 -59.90 -0.33 -18.12 16 9 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 10 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 13 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 N -0.71 -10.68 3.64 -53.80 -0.20 -10.88 16 18 C 0.52 8.15 6.18 -10.98 -0.07 8.09 16 19 O -0.53 -10.08 13.16 5.55 0.07 -10.01 16 20 C -0.07 -0.88 6.30 -29.04 -0.18 -1.06 16 21 C 0.13 1.90 5.93 -80.19 -0.48 1.42 16 22 N -0.23 -3.69 12.55 34.84 0.44 -3.25 16 23 N -0.51 -6.59 7.37 32.36 0.24 -6.35 16 24 H 0.44 4.23 8.96 -182.77 -1.64 2.59 16 25 C 0.13 1.62 7.34 -84.17 -0.62 1.01 16 26 C -0.14 -1.42 10.03 -39.78 -0.40 -1.82 16 27 C -0.07 -0.63 9.96 -39.91 -0.40 -1.03 16 28 C -0.16 -1.51 9.97 -39.95 -0.40 -1.91 16 29 C -0.03 -0.38 10.07 -39.58 -0.40 -0.78 16 30 C -0.16 -2.18 6.33 -105.21 -0.67 -2.84 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 34 H 0.05 0.76 5.78 -51.93 -0.30 0.46 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.96 7.53 -51.93 -0.39 0.56 16 37 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.60 7.60 -51.93 -0.39 0.21 16 40 H 0.03 0.65 6.71 -51.93 -0.35 0.30 16 41 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 42 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.40 5.69 8.60 -40.82 -0.35 5.34 16 45 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -34.38 400.51 -10.14 -44.51 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -8.88 Total: 14.57 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -3.22 Total: -6.55 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: 0.88 Total: -65.72 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.38 -10.14 -44.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725757002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.633 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds