Wall clock time and date at job start Wed Apr 1 2020 04:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47480 * 2 1 4 4 C 1.53000 * 109.46923 * 240.00113 * 2 1 3 5 5 C 1.52996 * 109.47473 * 120.00225 * 2 1 3 6 6 H 1.09000 * 109.47145 * 299.99572 * 5 2 1 7 7 C 1.53006 * 109.47102 * 59.99809 * 5 2 1 8 8 N 1.46504 * 109.46883 * 175.00371 * 7 5 2 9 9 C 1.36936 * 119.99477 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00404 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99891 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47327 * 59.99747 * 13 11 9 15 15 H 1.48505 * 109.47059 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47290 * 299.99991 * 13 11 9 17 17 N 1.46498 * 109.47308 * 179.97438 * 5 2 1 18 18 C 1.34783 * 120.00018 * 85.00189 * 17 5 2 19 19 O 1.21285 * 119.99349 * 359.97438 * 18 17 5 20 20 C 1.50698 * 120.00276 * 179.97438 * 18 17 5 21 21 C 1.50701 * 109.47201 * 179.97438 * 20 18 17 22 22 N 1.30242 * 126.10314 * 90.02164 * 21 20 18 23 23 N 1.39876 * 110.08400 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.46679 * 179.97438 * 23 22 21 25 25 C 1.37039 * 109.07589 * 0.02562 * 23 22 21 26 26 C 1.39291 * 133.85277 * 180.02562 * 25 23 22 27 27 C 1.36592 * 119.85144 * 179.97438 * 26 25 23 28 28 C 1.38969 * 120.81803 * 0.02562 * 27 26 25 29 29 C 1.36462 * 120.62627 * 0.02562 * 28 27 26 30 30 C 1.39950 * 119.63513 * 359.66087 * 29 28 27 31 31 H 1.09006 * 109.47004 * 300.00000 * 1 2 3 32 32 H 1.08998 * 109.47374 * 59.99604 * 1 2 3 33 33 H 1.09002 * 109.47721 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47312 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46984 * 300.00308 * 3 2 1 36 36 H 1.08993 * 109.47243 * 60.00129 * 3 2 1 37 37 H 1.09002 * 109.47044 * 299.99923 * 4 2 1 38 38 H 1.09004 * 109.47376 * 59.99482 * 4 2 1 39 39 H 1.08996 * 109.47552 * 179.97438 * 4 2 1 40 40 H 1.09001 * 109.47002 * 294.99868 * 7 5 2 41 41 H 1.08993 * 109.46955 * 55.00306 * 7 5 2 42 42 H 0.96992 * 119.99966 * 359.97438 * 8 7 5 43 43 H 0.96993 * 120.00031 * 180.02562 * 12 11 9 44 44 H 0.96995 * 120.00562 * 265.00143 * 17 5 2 45 45 H 1.08995 * 109.47082 * 300.00227 * 20 18 17 46 46 H 1.09002 * 109.46986 * 59.99783 * 20 18 17 47 47 H 1.07994 * 120.07234 * 359.97438 * 26 25 23 48 48 H 1.07996 * 119.59371 * 179.97438 * 27 26 25 49 49 H 1.08001 * 119.68847 * 179.97438 * 28 27 26 50 50 H 1.08005 * 120.18340 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6768 -0.2074 2.1392 7 6 1.5300 -2.1638 1.2491 8 7 2.1142 -2.8883 2.3806 9 6 1.8011 -4.2056 2.5852 10 1 1.1232 -4.7103 1.9128 11 6 2.3550 -4.8922 3.6569 12 7 3.1815 -4.2773 4.4762 13 14 1.9274 -6.6890 3.9365 14 1 2.3351 -7.4851 2.7511 15 1 2.6447 -7.1874 5.1375 16 1 0.4630 -6.8230 4.1429 17 7 3.5050 -0.7218 1.2488 18 6 4.1794 0.3359 1.7419 19 8 3.5733 1.2882 2.1854 20 6 5.6864 0.3352 1.7421 21 6 6.1893 1.6231 2.3416 22 7 6.4454 1.8348 3.6010 23 7 6.8946 3.1466 3.7858 24 1 7.1476 3.5403 4.6354 25 6 6.9187 3.7866 2.5743 26 6 7.2713 5.0717 2.1687 27 6 7.1848 5.4160 0.8497 28 6 6.7474 4.4989 -0.0983 29 6 6.3943 3.2332 0.2699 30 6 6.4806 2.8542 1.6144 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6765 -1.7489 -1.2493 38 1 1.6765 -0.2074 -2.1393 39 1 3.1298 -0.7209 -1.2496 40 1 0.4437 -2.1651 1.3388 41 1 1.8183 -2.6511 0.3178 42 1 2.7232 -2.4351 2.9843 43 1 3.5689 -4.7571 5.2248 44 1 3.9897 -1.4832 0.8938 45 1 6.0492 -0.5066 2.3318 46 1 6.0498 0.2451 0.7184 47 1 7.6124 5.7941 2.8954 48 1 7.4588 6.4136 0.5399 49 1 6.6856 4.7908 -1.1363 50 1 6.0550 2.5263 -0.4728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725757002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:26 Heat of formation + Delta-G solvation = 28.314233 kcal Electronic energy + Delta-G solvation = -30755.708790 eV Core-core repulsion = 26783.119948 eV Total energy + Delta-G solvation = -3972.588842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.29732 -41.18642 -38.70978 -38.02127 -36.16459 -34.60973 -34.26406 -32.95269 -31.35173 -30.70679 -29.73219 -28.90670 -28.08704 -27.62161 -25.59567 -23.95263 -23.24778 -23.08619 -22.16442 -20.66665 -19.80085 -19.06662 -18.79670 -18.00921 -17.83227 -17.13876 -16.83709 -16.41752 -16.09571 -15.79564 -15.51281 -15.38054 -15.27518 -14.83632 -14.80237 -14.70348 -14.56280 -14.23454 -14.09898 -13.55624 -13.25853 -12.99950 -12.96529 -12.90064 -12.81171 -12.77853 -12.68521 -12.47262 -12.32320 -12.18550 -11.98801 -11.95967 -11.72899 -11.69478 -11.57446 -11.27550 -11.22211 -10.91773 -10.68177 -9.82125 -9.62987 -8.96363 -8.92473 -7.91365 -5.20554 0.01947 0.60379 1.36404 1.49005 1.51565 1.57585 1.73588 1.74764 2.40653 2.58136 2.91116 3.39144 3.42695 3.57877 3.69604 3.77706 3.84393 4.00583 4.11233 4.18035 4.28958 4.34284 4.39848 4.47433 4.49853 4.49989 4.52029 4.68553 4.70302 4.86354 4.90312 4.94890 4.98835 5.00852 5.09944 5.11723 5.13782 5.21731 5.29750 5.36268 5.40471 5.50332 5.53485 5.54523 5.61672 5.63726 5.71415 5.99734 6.28927 6.40046 6.60998 6.67384 7.36243 7.37044 8.11209 8.34481 9.31307 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003034 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.765556 B = 9225.248986 C =10970.644302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.136 4.136 5 C 0.161 3.839 6 H 0.047 0.953 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.241 4.241 10 H 0.079 0.921 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.971 3.029 14 H -0.274 1.274 15 H -0.300 1.300 16 H -0.281 1.281 17 N -0.701 5.701 18 C 0.521 3.479 19 O -0.568 6.568 20 C -0.063 4.063 21 C 0.116 3.884 22 N -0.280 5.280 23 N -0.510 5.510 24 H 0.447 0.553 25 C 0.109 3.891 26 C -0.152 4.152 27 C -0.067 4.067 28 C -0.160 4.160 29 C -0.050 4.050 30 C -0.189 4.189 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.373 0.627 43 H 0.249 0.751 44 H 0.410 0.590 45 H 0.117 0.883 46 H 0.153 0.847 47 H 0.147 0.853 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.906 18.797 -15.125 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.175 4.175 4 C -0.193 4.193 5 C 0.056 3.944 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.801 3.199 14 H -0.200 1.200 15 H -0.227 1.227 16 H -0.208 1.208 17 N -0.352 5.352 18 C 0.307 3.693 19 O -0.448 6.448 20 C -0.104 4.104 21 C -0.062 4.062 22 N -0.094 5.094 23 N -0.226 5.226 24 H 0.293 0.707 25 C -0.007 4.007 26 C -0.174 4.174 27 C -0.087 4.087 28 C -0.179 4.179 29 C -0.070 4.070 30 C -0.197 4.197 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.246 0.754 45 H 0.135 0.865 46 H 0.170 0.830 47 H 0.164 0.836 48 H 0.180 0.820 49 H 0.172 0.828 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.401 18.791 -13.640 24.371 hybrid contribution 0.240 -0.783 1.055 1.336 sum 7.641 18.007 -12.585 23.260 Atomic orbital electron populations 1.21890 0.93682 1.02255 1.01972 1.20843 0.96144 0.95549 0.94556 1.21744 1.00626 0.94704 1.00417 1.21868 1.01364 1.00199 0.95879 1.21029 0.79883 0.95646 0.97869 0.93482 1.21229 0.96234 0.89717 0.90986 1.42544 1.55390 1.09308 1.31329 1.19581 1.21379 0.88116 1.08205 0.90325 1.25535 1.00567 1.02282 0.98264 1.69830 1.36264 1.37425 1.18371 0.85244 0.77333 0.80478 0.76873 1.19952 1.22694 1.20787 1.45790 1.06879 1.20005 1.62545 1.20473 0.89855 0.82238 0.76738 1.90707 1.70839 1.35941 1.47283 1.20156 0.91459 0.93529 1.05292 1.22965 0.97822 0.95475 0.89932 1.76498 1.16322 0.97506 1.19083 1.45851 1.60466 1.07846 1.08455 0.70673 1.19304 0.99586 0.95559 0.86255 1.20195 1.06555 0.92418 0.98238 1.21175 0.95383 1.00787 0.91381 1.21063 1.02448 0.92979 1.01410 1.20643 0.96144 0.97587 0.92632 1.19998 1.10530 0.93162 0.95992 0.93958 0.90615 0.92129 0.93324 0.91911 0.95022 0.92280 0.91213 0.92180 0.94953 0.93408 0.79504 0.94248 0.75364 0.86497 0.82958 0.83557 0.82036 0.82771 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.12 71.98 0.58 -2.81 16 2 C -0.07 -1.79 0.62 -52.19 -0.03 -1.82 16 3 C -0.12 -3.13 7.00 71.98 0.50 -2.63 16 4 C -0.14 -2.84 7.97 71.98 0.57 -2.26 16 5 C 0.16 5.34 1.69 44.99 0.08 5.42 16 6 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 7 C 0.14 5.43 5.10 86.38 0.44 5.87 16 8 N -0.74 -36.58 5.43 -343.43 -1.87 -38.45 16 9 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 10 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 11 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 12 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16 13 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 N -0.70 -21.38 3.64 -442.52 -1.61 -22.99 16 18 C 0.52 16.75 6.18 87.66 0.54 17.29 16 19 O -0.57 -22.55 13.16 -3.04 -0.04 -22.59 16 20 C -0.06 -1.64 6.30 29.10 0.18 -1.46 16 21 C 0.12 3.53 5.93 44.79 0.27 3.80 16 22 N -0.28 -9.42 12.55 -43.70 -0.55 -9.96 16 23 N -0.51 -13.83 7.37 -51.53 -0.38 -14.21 16 24 H 0.45 9.24 8.96 -213.47 -1.91 7.33 16 25 C 0.11 2.74 7.34 39.21 0.29 3.03 16 26 C -0.15 -2.74 10.03 22.14 0.22 -2.51 16 27 C -0.07 -0.95 9.96 22.06 0.22 -0.73 16 28 C -0.16 -2.46 9.97 22.03 0.22 -2.24 16 29 C -0.05 -1.01 10.07 22.27 0.22 -0.78 16 30 C -0.19 -5.05 6.33 -20.24 -0.13 -5.18 16 31 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.48 6.54 -2.39 -0.02 1.47 16 34 H 0.05 1.33 5.78 -2.39 -0.01 1.32 16 35 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.03 1.01 7.53 -2.39 -0.02 0.99 16 37 H 0.06 1.29 6.32 -2.39 -0.02 1.27 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 40 H 0.03 1.25 6.71 -2.39 -0.02 1.23 16 41 H 0.05 1.66 6.17 -2.39 -0.01 1.64 16 42 H 0.37 20.15 7.33 -92.71 -0.68 19.47 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.41 11.42 8.60 -92.71 -0.80 10.62 16 45 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 46 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 48 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 49 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 50 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -77.04 400.51 0.95 -76.09 By element: Atomic # 1 Polarization: 48.80 SS G_CDS: -2.40 Total: 46.39 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.49 Total: -3.02 kcal Atomic # 7 Polarization: -140.60 SS G_CDS: -4.12 Total: -144.72 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.04 Total: -22.59 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.04 0.95 -76.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725757002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.407 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds