Wall clock time and date at job start Wed Apr 1 2020 02:50:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30112 * 124.95387 * 2 1
4 4 C 1.35780 * 109.64460 * 179.97438 * 3 2 1
5 5 C 1.39741 * 133.59935 * 180.02562 * 4 3 2
6 6 C 1.36600 * 119.88526 * 180.02562 * 5 4 3
7 7 C 1.38780 * 120.66804 * 359.97438 * 6 5 4
8 8 C 1.37847 * 120.45302 * 359.97438 * 7 6 5
9 9 C 1.38836 * 119.69139 * 0.02562 * 8 7 6
10 10 N 1.36040 * 124.94762 * 179.97438 * 2 1 3
11 11 C 1.46504 * 126.34619 * 359.97438 * 10 2 1
12 12 C 1.50694 * 109.47300 * 270.04286 * 11 10 2
13 13 O 1.21288 * 119.99742 * 0.02562 * 12 11 10
14 14 N 1.34769 * 120.00138 * 180.02562 * 12 11 10
15 15 C 1.46504 * 120.00149 * 0.02562 * 14 12 11
16 16 C 1.46507 * 120.00380 * 179.97438 * 14 12 11
17 17 C 1.53005 * 109.46778 * 89.99745 * 16 14 12
18 18 C 1.52996 * 109.46832 * 179.97438 * 17 16 14
19 19 N 1.46503 * 109.46928 * 179.97438 * 18 17 16
20 20 C 1.46494 * 120.00439 * 270.00450 * 19 18 17
21 21 C 1.36943 * 119.99654 * 90.00457 * 19 18 17
22 22 H 1.08003 * 119.99632 * 20.36494 * 21 19 18
23 23 C 1.38811 * 120.00039 * 200.35997 * 21 19 18
24 24 N 1.31618 * 119.99540 * 14.99102 * 23 21 19
25 25 Si 1.86802 * 120.00093 * 194.98717 * 23 21 19
26 26 H 1.48499 * 109.46755 * 85.00239 * 25 23 21
27 27 H 1.48500 * 109.46878 * 205.00495 * 25 23 21
28 28 H 1.48501 * 109.46813 * 325.00468 * 25 23 21
29 29 H 1.09002 * 109.47087 * 270.03008 * 1 2 3
30 30 H 1.09001 * 109.46826 * 30.02119 * 1 2 3
31 31 H 1.08995 * 109.47710 * 150.02342 * 1 2 3
32 32 H 1.07997 * 120.05331 * 359.96897 * 5 4 3
33 33 H 1.07999 * 119.66605 * 179.72529 * 6 5 4
34 34 H 1.07999 * 119.77272 * 179.97438 * 7 6 5
35 35 H 1.08003 * 120.15760 * 179.97438 * 8 7 6
36 36 H 1.09002 * 109.47017 * 30.04885 * 11 10 2
37 37 H 1.09005 * 109.46345 * 150.04532 * 11 10 2
38 38 H 1.09004 * 109.46828 * 89.99960 * 15 14 12
39 39 H 1.08998 * 109.47316 * 210.00155 * 15 14 12
40 40 H 1.08997 * 109.46851 * 329.99917 * 15 14 12
41 41 H 1.08994 * 109.47590 * 210.00107 * 16 14 12
42 42 H 1.08995 * 109.46797 * 330.00423 * 16 14 12
43 43 H 1.08994 * 109.47356 * 300.00505 * 17 16 14
44 44 H 1.08997 * 109.46485 * 60.00436 * 17 16 14
45 45 H 1.08994 * 109.47589 * 300.00395 * 18 17 16
46 46 H 1.09011 * 109.47108 * 60.00663 * 18 17 16
47 47 H 1.08992 * 109.47263 * 95.09853 * 20 19 18
48 48 H 1.09002 * 109.47274 * 215.09903 * 20 19 18
49 49 H 1.09000 * 109.46940 * 335.09519 * 20 19 18
50 50 H 0.97003 * 119.99632 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2525 1.0664 0.0000
4 6 3.5621 0.7079 0.0006
5 6 4.7587 1.4295 0.0013
6 6 5.9532 0.7668 0.0012
7 6 5.9930 -0.6204 0.0010
8 6 4.8253 -1.3529 0.0013
9 6 3.6018 -0.6966 0.0014
10 7 2.2863 -1.1151 0.0005
11 6 1.8164 -2.5027 0.0016
12 6 1.6548 -2.9772 1.4228
13 8 1.9069 -2.2296 2.3440
14 7 1.2303 -4.2322 1.6701
15 6 0.9264 -5.1353 0.5573
16 6 1.0737 -4.6937 3.0517
17 6 -0.3473 -4.3921 3.5321
18 6 -0.5110 -4.8746 4.9747
19 7 -1.8715 -4.5853 5.4350
20 6 -2.1679 -3.3077 6.0875
21 6 -2.8661 -5.5093 5.2551
22 1 -2.6158 -6.5467 5.0890
23 6 -4.1959 -5.1125 5.2864
24 7 -4.5043 -3.8364 5.1917
25 14 -5.5478 -6.3896 5.4626
26 1 -5.7537 -6.6970 6.9008
27 1 -6.8084 -5.8589 4.8843
28 1 -5.1557 -7.6279 4.7429
29 1 -0.3633 0.0005 1.0277
30 1 -0.3633 0.8898 -0.5142
31 1 -0.3634 -0.8901 -0.5134
32 1 4.7392 2.5093 0.0010
33 1 6.8759 1.3280 -0.0027
34 1 6.9455 -1.1296 0.0005
35 1 4.8618 -2.4323 0.0007
36 1 0.8572 -2.5619 -0.5126
37 1 2.5432 -3.1327 -0.5114
38 1 1.8247 -5.6884 0.2826
39 1 0.1471 -5.8349 0.8595
40 1 0.5814 -4.5546 -0.2981
41 1 1.2528 -5.7678 3.0985
42 1 1.7904 -4.1776 3.6905
43 1 -0.5264 -3.3180 3.4853
44 1 -1.0639 -4.9081 2.8932
45 1 -0.3321 -5.9488 5.0211
46 1 0.2057 -4.3589 5.6140
47 1 -2.5485 -2.6022 5.3491
48 1 -2.9178 -3.4613 6.8635
49 1 -1.2578 -2.9089 6.5358
50 1 -5.4336 -3.5592 5.2132
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733773179.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:50:53
Heat of formation + Delta-G solvation = 47.798550 kcal
Electronic energy + Delta-G solvation = -30075.230168 eV
Core-core repulsion = 26103.486230 eV
Total energy + Delta-G solvation = -3971.743939 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.26312 -40.95976 -38.39097 -37.95918 -36.78578 -35.34068 -34.07618 -32.45489
-32.17605 -31.36656 -29.13292 -28.47357 -28.11042 -27.84332 -26.43393 -24.00412
-23.15135 -23.05692 -22.06150 -21.42928 -20.22671 -18.78074 -18.57087 -18.39086
-18.15753 -17.12278 -16.73349 -16.65921 -16.26101 -16.24743 -15.78523 -15.39533
-15.08960 -15.02930 -14.78948 -14.73060 -14.31192 -14.25578 -14.06450 -14.04505
-13.64910 -13.33587 -13.28000 -13.21500 -12.97723 -12.80681 -12.74120 -12.56598
-12.51239 -12.48839 -12.40049 -12.30463 -12.04029 -11.88150 -11.76585 -11.43916
-10.99597 -10.92738 -10.65146 -9.77277 -9.27157 -9.08139 -8.83370 -7.83148
-5.30031 -0.03126 0.53361 1.34504 1.40938 1.46012 1.49187 1.56602
1.73219 2.06318 2.51216 2.90666 3.17087 3.30108 3.33657 3.44298
3.59474 3.66961 3.90614 4.03202 4.06394 4.14366 4.27592 4.30841
4.35039 4.43147 4.49835 4.51027 4.53989 4.56719 4.65515 4.71513
4.76174 4.80208 4.85603 4.86890 4.90042 4.95200 5.17807 5.22458
5.24387 5.38407 5.45577 5.51961 5.56206 5.57532 5.62322 5.65608
5.97004 6.04066 6.30142 6.30796 6.85195 7.00745 7.12418 7.85071
8.30735 9.21401
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.017640 B = 0.002302 C = 0.002225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1586.882875 B =12158.304250 C =12579.602620
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.284 3.716
3 N -0.535 5.535
4 C 0.010 3.990
5 C -0.089 4.089
6 C -0.123 4.123
7 C -0.101 4.101
8 C -0.118 4.118
9 C 0.035 3.965
10 N -0.476 5.476
11 C 0.094 3.906
12 C 0.487 3.513
13 O -0.578 6.578
14 N -0.606 5.606
15 C 0.063 3.937
16 C 0.127 3.873
17 C -0.128 4.128
18 C 0.151 3.849
19 N -0.621 5.621
20 C 0.179 3.821
21 C -0.258 4.258
22 H 0.079 0.921
23 C -0.060 4.060
24 N -0.943 5.943
25 Si 0.971 3.029
26 H -0.288 1.288
27 H -0.298 1.298
28 H -0.263 1.263
29 H 0.075 0.925
30 H 0.108 0.892
31 H 0.106 0.894
32 H 0.131 0.869
33 H 0.159 0.841
34 H 0.163 0.837
35 H 0.139 0.861
36 H 0.155 0.845
37 H 0.155 0.845
38 H 0.088 0.912
39 H 0.079 0.921
40 H 0.094 0.906
41 H 0.108 0.892
42 H 0.062 0.938
43 H 0.017 0.983
44 H 0.050 0.950
45 H 0.063 0.937
46 H 0.045 0.955
47 H -0.002 1.002
48 H 0.019 0.981
49 H 0.022 0.978
50 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.919 -0.794 -17.908 26.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.019 3.981
3 N -0.256 5.256
4 C -0.108 4.108
5 C -0.108 4.108
6 C -0.143 4.143
7 C -0.121 4.121
8 C -0.138 4.138
9 C -0.073 4.073
10 N -0.166 5.166
11 C -0.031 4.031
12 C 0.274 3.726
13 O -0.457 6.457
14 N -0.339 5.339
15 C -0.079 4.079
16 C 0.003 3.997
17 C -0.169 4.169
18 C 0.025 3.975
19 N -0.344 5.344
20 C 0.033 3.967
21 C -0.388 4.388
22 H 0.097 0.903
23 C -0.254 4.254
24 N -0.590 5.590
25 Si 0.799 3.201
26 H -0.215 1.215
27 H -0.224 1.224
28 H -0.188 1.188
29 H 0.093 0.907
30 H 0.126 0.874
31 H 0.125 0.875
32 H 0.149 0.851
33 H 0.177 0.823
34 H 0.181 0.819
35 H 0.157 0.843
36 H 0.172 0.828
37 H 0.173 0.827
38 H 0.107 0.893
39 H 0.098 0.902
40 H 0.113 0.887
41 H 0.126 0.874
42 H 0.081 0.919
43 H 0.036 0.964
44 H 0.069 0.931
45 H 0.081 0.919
46 H 0.064 0.936
47 H 0.016 0.984
48 H 0.037 0.963
49 H 0.040 0.960
50 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 19.585 0.338 -17.426 26.217
hybrid contribution -1.181 -0.775 0.586 1.530
sum 18.403 -0.438 -16.839 24.949
Atomic orbital electron populations
1.20525 0.82569 1.06372 1.04204 1.24120 0.96795 0.80636 0.96574
1.70350 1.01914 1.28572 1.24759 1.19549 0.92493 0.91724 1.07001
1.20292 0.89498 1.00239 1.00807 1.21028 0.97627 0.94935 1.00743
1.21322 0.98067 0.94023 0.98663 1.20302 0.88733 1.00516 1.04273
1.19194 0.86142 0.95179 1.06750 1.44876 1.04564 1.06768 1.60343
1.21991 1.06399 0.80393 0.94305 1.21374 0.77119 0.82044 0.92086
1.90781 1.51890 1.55341 1.47659 1.48016 1.64874 1.12496 1.08493
1.22250 1.03051 0.94347 0.88214 1.21432 0.95734 1.00821 0.81691
1.22274 0.96365 0.99019 0.99264 1.20925 0.85103 0.99110 0.92408
1.44269 1.06073 1.16950 1.67132 1.20489 0.94877 0.86833 0.94480
1.19588 0.86342 0.89747 1.43151 0.90349 1.25815 0.99889 0.97839
1.01859 1.70283 1.16924 1.15816 1.55950 0.85221 0.78364 0.78850
0.77643 1.21499 1.22429 1.18763 0.90663 0.87361 0.87528 0.85098
0.82296 0.81902 0.84288 0.82780 0.82707 0.89313 0.90237 0.88732
0.87398 0.91902 0.96377 0.93113 0.91901 0.93644 0.98366 0.96261
0.95962 0.94433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.67 10.17 71.24 0.72 -0.94 16
2 C 0.28 8.03 7.85 137.92 1.08 9.12 16
3 N -0.53 -17.77 11.27 -179.96 -2.03 -19.80 16
4 C 0.01 0.29 7.23 39.45 0.29 0.58 16
5 C -0.09 -2.18 10.05 22.25 0.22 -1.96 16
6 C -0.12 -2.20 9.96 22.02 0.22 -1.99 16
7 C -0.10 -1.68 10.03 22.31 0.22 -1.46 16
8 C -0.12 -2.41 10.05 22.32 0.22 -2.19 16
9 C 0.04 0.96 6.87 38.86 0.27 1.23 16
10 N -0.48 -11.92 2.29 -509.62 -1.17 -13.09 16
11 C 0.09 1.56 4.96 85.63 0.42 1.99 16
12 C 0.49 12.40 7.74 87.66 0.68 13.08 16
13 O -0.58 -21.78 16.01 -3.05 -0.05 -21.83 16
14 N -0.61 -13.00 2.87 -846.75 -2.43 -15.43 16
15 C 0.06 0.68 10.24 127.77 1.31 1.98 16
16 C 0.13 3.35 5.41 86.38 0.47 3.81 16
17 C -0.13 -4.65 5.86 30.59 0.18 -4.47 16
18 C 0.15 6.06 5.71 86.38 0.49 6.55 16
19 N -0.62 -31.93 2.93 -726.95 -2.13 -34.06 16
20 C 0.18 9.46 9.02 127.77 1.15 10.61 16
21 C -0.26 -14.06 9.68 84.03 0.81 -13.24 16
22 H 0.08 4.03 7.86 -2.91 -0.02 4.00 16
23 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16
24 N -0.94 -56.80 10.67 21.65 0.23 -56.57 16
25 Si 0.97 44.65 29.58 68.60 2.03 46.68 16
26 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16
27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16
28 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16
29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16
31 H 0.11 1.53 7.01 -2.39 -0.02 1.52 16
32 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16
33 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16
34 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16
35 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16
36 H 0.15 1.52 6.26 -2.39 -0.01 1.51 16
37 H 0.16 1.37 8.11 -2.38 -0.02 1.35 16
38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
39 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16
40 H 0.09 0.53 6.44 -2.39 -0.02 0.52 16
41 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16
42 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16
43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16
44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
45 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16
46 H 0.05 1.74 7.86 -2.38 -0.02 1.72 16
47 H 0.00 -0.12 7.40 -2.39 -0.02 -0.13 16
48 H 0.02 1.07 7.21 -2.39 -0.02 1.05 16
49 H 0.02 1.03 7.83 -2.39 -0.02 1.01 16
50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16
Total: -1.00 -86.42 411.68 4.57 -81.84
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: 0.92 Total: 12.47 kcal
Atomic # 6 Polarization: 10.59 SS G_CDS: 9.20 Total: 19.79 kcal
Atomic # 7 Polarization: -131.42 SS G_CDS: -7.53 Total: -138.95 kcal
Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal
Total: -86.42 4.57 -81.84 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733773179.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.643 kcal
(2) G-P(sol) polarization free energy of solvation -86.418 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds