Wall clock time and date at job start Wed Apr 1 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30112 * 124.95387 * 2 1 4 4 C 1.35780 * 109.64460 * 179.97438 * 3 2 1 5 5 C 1.39741 * 133.59935 * 180.02562 * 4 3 2 6 6 C 1.36600 * 119.88526 * 180.02562 * 5 4 3 7 7 C 1.38780 * 120.66804 * 359.97438 * 6 5 4 8 8 C 1.37847 * 120.45302 * 359.97438 * 7 6 5 9 9 C 1.38836 * 119.69139 * 0.02562 * 8 7 6 10 10 N 1.36040 * 124.94762 * 179.97438 * 2 1 3 11 11 C 1.46504 * 126.34619 * 359.97438 * 10 2 1 12 12 C 1.50694 * 109.47300 * 270.04286 * 11 10 2 13 13 O 1.21288 * 119.99742 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00138 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00149 * 0.02562 * 14 12 11 16 16 C 1.46507 * 120.00380 * 179.97438 * 14 12 11 17 17 C 1.53005 * 109.46778 * 89.99745 * 16 14 12 18 18 C 1.52996 * 109.46832 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.46928 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00439 * 270.00450 * 19 18 17 21 21 C 1.36943 * 119.99654 * 90.00457 * 19 18 17 22 22 H 1.08003 * 119.99632 * 20.36494 * 21 19 18 23 23 C 1.38811 * 120.00039 * 200.35997 * 21 19 18 24 24 N 1.31618 * 119.99540 * 14.99102 * 23 21 19 25 25 Si 1.86802 * 120.00093 * 194.98717 * 23 21 19 26 26 H 1.48499 * 109.46755 * 85.00239 * 25 23 21 27 27 H 1.48500 * 109.46878 * 205.00495 * 25 23 21 28 28 H 1.48501 * 109.46813 * 325.00468 * 25 23 21 29 29 H 1.09002 * 109.47087 * 270.03008 * 1 2 3 30 30 H 1.09001 * 109.46826 * 30.02119 * 1 2 3 31 31 H 1.08995 * 109.47710 * 150.02342 * 1 2 3 32 32 H 1.07997 * 120.05331 * 359.96897 * 5 4 3 33 33 H 1.07999 * 119.66605 * 179.72529 * 6 5 4 34 34 H 1.07999 * 119.77272 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.15760 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.47017 * 30.04885 * 11 10 2 37 37 H 1.09005 * 109.46345 * 150.04532 * 11 10 2 38 38 H 1.09004 * 109.46828 * 89.99960 * 15 14 12 39 39 H 1.08998 * 109.47316 * 210.00155 * 15 14 12 40 40 H 1.08997 * 109.46851 * 329.99917 * 15 14 12 41 41 H 1.08994 * 109.47590 * 210.00107 * 16 14 12 42 42 H 1.08995 * 109.46797 * 330.00423 * 16 14 12 43 43 H 1.08994 * 109.47356 * 300.00505 * 17 16 14 44 44 H 1.08997 * 109.46485 * 60.00436 * 17 16 14 45 45 H 1.08994 * 109.47589 * 300.00395 * 18 17 16 46 46 H 1.09011 * 109.47108 * 60.00663 * 18 17 16 47 47 H 1.08992 * 109.47263 * 95.09853 * 20 19 18 48 48 H 1.09002 * 109.47274 * 215.09903 * 20 19 18 49 49 H 1.09000 * 109.46940 * 335.09519 * 20 19 18 50 50 H 0.97003 * 119.99632 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0664 0.0000 4 6 3.5621 0.7079 0.0006 5 6 4.7587 1.4295 0.0013 6 6 5.9532 0.7668 0.0012 7 6 5.9930 -0.6204 0.0010 8 6 4.8253 -1.3529 0.0013 9 6 3.6018 -0.6966 0.0014 10 7 2.2863 -1.1151 0.0005 11 6 1.8164 -2.5027 0.0016 12 6 1.6548 -2.9772 1.4228 13 8 1.9069 -2.2296 2.3440 14 7 1.2303 -4.2322 1.6701 15 6 0.9264 -5.1353 0.5573 16 6 1.0737 -4.6937 3.0517 17 6 -0.3473 -4.3921 3.5321 18 6 -0.5110 -4.8746 4.9747 19 7 -1.8715 -4.5853 5.4350 20 6 -2.1679 -3.3077 6.0875 21 6 -2.8661 -5.5093 5.2551 22 1 -2.6158 -6.5467 5.0890 23 6 -4.1959 -5.1125 5.2864 24 7 -4.5043 -3.8364 5.1917 25 14 -5.5478 -6.3896 5.4626 26 1 -5.7537 -6.6970 6.9008 27 1 -6.8084 -5.8589 4.8843 28 1 -5.1557 -7.6279 4.7429 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 4.7392 2.5093 0.0010 33 1 6.8759 1.3280 -0.0027 34 1 6.9455 -1.1296 0.0005 35 1 4.8618 -2.4323 0.0007 36 1 0.8572 -2.5619 -0.5126 37 1 2.5432 -3.1327 -0.5114 38 1 1.8247 -5.6884 0.2826 39 1 0.1471 -5.8349 0.8595 40 1 0.5814 -4.5546 -0.2981 41 1 1.2528 -5.7678 3.0985 42 1 1.7904 -4.1776 3.6905 43 1 -0.5264 -3.3180 3.4853 44 1 -1.0639 -4.9081 2.8932 45 1 -0.3321 -5.9488 5.0211 46 1 0.2057 -4.3589 5.6140 47 1 -2.5485 -2.6022 5.3491 48 1 -2.9178 -3.4613 6.8635 49 1 -1.2578 -2.9089 6.5358 50 1 -5.4336 -3.5592 5.2132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733773179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:53 Heat of formation + Delta-G solvation = 47.798550 kcal Electronic energy + Delta-G solvation = -30075.230168 eV Core-core repulsion = 26103.486230 eV Total energy + Delta-G solvation = -3971.743939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.26312 -40.95976 -38.39097 -37.95918 -36.78578 -35.34068 -34.07618 -32.45489 -32.17605 -31.36656 -29.13292 -28.47357 -28.11042 -27.84332 -26.43393 -24.00412 -23.15135 -23.05692 -22.06150 -21.42928 -20.22671 -18.78074 -18.57087 -18.39086 -18.15753 -17.12278 -16.73349 -16.65921 -16.26101 -16.24743 -15.78523 -15.39533 -15.08960 -15.02930 -14.78948 -14.73060 -14.31192 -14.25578 -14.06450 -14.04505 -13.64910 -13.33587 -13.28000 -13.21500 -12.97723 -12.80681 -12.74120 -12.56598 -12.51239 -12.48839 -12.40049 -12.30463 -12.04029 -11.88150 -11.76585 -11.43916 -10.99597 -10.92738 -10.65146 -9.77277 -9.27157 -9.08139 -8.83370 -7.83148 -5.30031 -0.03126 0.53361 1.34504 1.40938 1.46012 1.49187 1.56602 1.73219 2.06318 2.51216 2.90666 3.17087 3.30108 3.33657 3.44298 3.59474 3.66961 3.90614 4.03202 4.06394 4.14366 4.27592 4.30841 4.35039 4.43147 4.49835 4.51027 4.53989 4.56719 4.65515 4.71513 4.76174 4.80208 4.85603 4.86890 4.90042 4.95200 5.17807 5.22458 5.24387 5.38407 5.45577 5.51961 5.56206 5.57532 5.62322 5.65608 5.97004 6.04066 6.30142 6.30796 6.85195 7.00745 7.12418 7.85071 8.30735 9.21401 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.002302 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.882875 B =12158.304250 C =12579.602620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.284 3.716 3 N -0.535 5.535 4 C 0.010 3.990 5 C -0.089 4.089 6 C -0.123 4.123 7 C -0.101 4.101 8 C -0.118 4.118 9 C 0.035 3.965 10 N -0.476 5.476 11 C 0.094 3.906 12 C 0.487 3.513 13 O -0.578 6.578 14 N -0.606 5.606 15 C 0.063 3.937 16 C 0.127 3.873 17 C -0.128 4.128 18 C 0.151 3.849 19 N -0.621 5.621 20 C 0.179 3.821 21 C -0.258 4.258 22 H 0.079 0.921 23 C -0.060 4.060 24 N -0.943 5.943 25 Si 0.971 3.029 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.263 1.263 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.045 0.955 47 H -0.002 1.002 48 H 0.019 0.981 49 H 0.022 0.978 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.919 -0.794 -17.908 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.019 3.981 3 N -0.256 5.256 4 C -0.108 4.108 5 C -0.108 4.108 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.138 4.138 9 C -0.073 4.073 10 N -0.166 5.166 11 C -0.031 4.031 12 C 0.274 3.726 13 O -0.457 6.457 14 N -0.339 5.339 15 C -0.079 4.079 16 C 0.003 3.997 17 C -0.169 4.169 18 C 0.025 3.975 19 N -0.344 5.344 20 C 0.033 3.967 21 C -0.388 4.388 22 H 0.097 0.903 23 C -0.254 4.254 24 N -0.590 5.590 25 Si 0.799 3.201 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.188 1.188 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.149 0.851 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.016 0.984 48 H 0.037 0.963 49 H 0.040 0.960 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.585 0.338 -17.426 26.217 hybrid contribution -1.181 -0.775 0.586 1.530 sum 18.403 -0.438 -16.839 24.949 Atomic orbital electron populations 1.20525 0.82569 1.06372 1.04204 1.24120 0.96795 0.80636 0.96574 1.70350 1.01914 1.28572 1.24759 1.19549 0.92493 0.91724 1.07001 1.20292 0.89498 1.00239 1.00807 1.21028 0.97627 0.94935 1.00743 1.21322 0.98067 0.94023 0.98663 1.20302 0.88733 1.00516 1.04273 1.19194 0.86142 0.95179 1.06750 1.44876 1.04564 1.06768 1.60343 1.21991 1.06399 0.80393 0.94305 1.21374 0.77119 0.82044 0.92086 1.90781 1.51890 1.55341 1.47659 1.48016 1.64874 1.12496 1.08493 1.22250 1.03051 0.94347 0.88214 1.21432 0.95734 1.00821 0.81691 1.22274 0.96365 0.99019 0.99264 1.20925 0.85103 0.99110 0.92408 1.44269 1.06073 1.16950 1.67132 1.20489 0.94877 0.86833 0.94480 1.19588 0.86342 0.89747 1.43151 0.90349 1.25815 0.99889 0.97839 1.01859 1.70283 1.16924 1.15816 1.55950 0.85221 0.78364 0.78850 0.77643 1.21499 1.22429 1.18763 0.90663 0.87361 0.87528 0.85098 0.82296 0.81902 0.84288 0.82780 0.82707 0.89313 0.90237 0.88732 0.87398 0.91902 0.96377 0.93113 0.91901 0.93644 0.98366 0.96261 0.95962 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.17 71.24 0.72 -0.94 16 2 C 0.28 8.03 7.85 137.92 1.08 9.12 16 3 N -0.53 -17.77 11.27 -179.96 -2.03 -19.80 16 4 C 0.01 0.29 7.23 39.45 0.29 0.58 16 5 C -0.09 -2.18 10.05 22.25 0.22 -1.96 16 6 C -0.12 -2.20 9.96 22.02 0.22 -1.99 16 7 C -0.10 -1.68 10.03 22.31 0.22 -1.46 16 8 C -0.12 -2.41 10.05 22.32 0.22 -2.19 16 9 C 0.04 0.96 6.87 38.86 0.27 1.23 16 10 N -0.48 -11.92 2.29 -509.62 -1.17 -13.09 16 11 C 0.09 1.56 4.96 85.63 0.42 1.99 16 12 C 0.49 12.40 7.74 87.66 0.68 13.08 16 13 O -0.58 -21.78 16.01 -3.05 -0.05 -21.83 16 14 N -0.61 -13.00 2.87 -846.75 -2.43 -15.43 16 15 C 0.06 0.68 10.24 127.77 1.31 1.98 16 16 C 0.13 3.35 5.41 86.38 0.47 3.81 16 17 C -0.13 -4.65 5.86 30.59 0.18 -4.47 16 18 C 0.15 6.06 5.71 86.38 0.49 6.55 16 19 N -0.62 -31.93 2.93 -726.95 -2.13 -34.06 16 20 C 0.18 9.46 9.02 127.77 1.15 10.61 16 21 C -0.26 -14.06 9.68 84.03 0.81 -13.24 16 22 H 0.08 4.03 7.86 -2.91 -0.02 4.00 16 23 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16 24 N -0.94 -56.80 10.67 21.65 0.23 -56.57 16 25 Si 0.97 44.65 29.58 68.60 2.03 46.68 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 1.53 7.01 -2.39 -0.02 1.52 16 32 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.15 1.52 6.26 -2.39 -0.01 1.51 16 37 H 0.16 1.37 8.11 -2.38 -0.02 1.35 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 40 H 0.09 0.53 6.44 -2.39 -0.02 0.52 16 41 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 42 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16 46 H 0.05 1.74 7.86 -2.38 -0.02 1.72 16 47 H 0.00 -0.12 7.40 -2.39 -0.02 -0.13 16 48 H 0.02 1.07 7.21 -2.39 -0.02 1.05 16 49 H 0.02 1.03 7.83 -2.39 -0.02 1.01 16 50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -86.42 411.68 4.57 -81.84 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.92 Total: 12.47 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 9.20 Total: 19.79 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -7.53 Total: -138.95 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -86.42 4.57 -81.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733773179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.643 kcal (2) G-P(sol) polarization free energy of solvation -86.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds