Wall clock time and date at job start Wed Apr 1 2020 03:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31887 * 118.94844 * 2 1 4 4 C 1.32138 * 120.96411 * 179.68031 * 3 2 1 5 5 C 1.39967 * 118.92003 * 0.56691 * 4 3 2 6 6 C 1.47839 * 120.93803 * 179.72034 * 5 4 3 7 7 O 1.21548 * 119.99879 * 140.78118 * 6 5 4 8 8 N 1.34777 * 119.99656 * 320.78197 * 6 5 4 9 9 C 1.47425 * 125.65151 * 4.96224 * 8 6 5 10 10 C 1.54905 * 104.83379 * 204.17407 * 9 8 6 11 11 C 1.55157 * 101.58234 * 322.99269 * 10 9 8 12 12 C 1.47025 * 125.64794 * 185.01577 * 8 6 5 13 13 H 1.09000 * 110.00957 * 59.39905 * 12 8 6 14 14 C 1.53002 * 109.88145 * 298.31264 * 12 8 6 15 15 N 1.46499 * 109.47018 * 178.03263 * 14 12 8 16 16 C 1.46501 * 120.00038 * 270.45587 * 15 14 12 17 17 C 1.36937 * 119.99836 * 90.46314 * 15 14 12 18 18 H 1.08001 * 120.00188 * 2.35196 * 17 15 14 19 19 C 1.38810 * 119.99700 * 182.36082 * 17 15 14 20 20 N 1.31622 * 120.00163 * 349.41452 * 19 17 15 21 21 Si 1.86801 * 119.99976 * 169.69584 * 19 17 15 22 22 H 1.48498 * 109.47561 * 89.99372 * 21 19 17 23 23 H 1.48502 * 109.47056 * 209.99673 * 21 19 17 24 24 H 1.48503 * 109.46963 * 329.99185 * 21 19 17 25 25 C 1.39928 * 118.12620 * 359.45000 * 5 4 3 26 26 C 1.50691 * 120.54199 * 180.29035 * 25 5 4 27 27 C 1.53001 * 117.49981 * 189.70690 * 26 25 5 28 28 C 1.53000 * 60.00104 * 252.51091 * 27 26 25 29 29 N 1.31855 * 118.95315 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47618 * 270.01876 * 1 2 3 31 31 H 1.08998 * 109.47600 * 30.02309 * 1 2 3 32 32 H 1.09003 * 109.46856 * 150.02118 * 1 2 3 33 33 H 1.07997 * 120.53964 * 180.31470 * 4 3 2 34 34 H 1.09004 * 110.36832 * 85.33480 * 9 8 6 35 35 H 1.09008 * 110.45760 * 323.06002 * 9 8 6 36 36 H 1.09001 * 111.00825 * 204.91344 * 10 9 8 37 37 H 1.09010 * 111.03593 * 81.07618 * 10 9 8 38 38 H 1.08998 * 110.71530 * 277.13715 * 11 10 9 39 39 H 1.09000 * 110.72253 * 153.86697 * 11 10 9 40 40 H 1.09000 * 109.46947 * 58.03002 * 14 12 8 41 41 H 1.09002 * 109.46718 * 298.03335 * 14 12 8 42 42 H 1.08999 * 109.47274 * 240.11127 * 16 15 14 43 43 H 1.09006 * 109.47116 * 0.11713 * 16 15 14 44 44 H 1.09003 * 109.47034 * 120.10801 * 16 15 14 45 45 H 0.96996 * 120.00114 * 180.02562 * 20 19 17 46 46 H 1.08999 * 115.54868 * 335.41822 * 26 25 5 47 47 H 1.08993 * 117.50019 * 0.02562 * 27 26 25 48 48 H 1.09005 * 117.49798 * 145.02482 * 27 26 25 49 49 H 1.09007 * 117.50406 * 252.50955 * 28 27 26 50 50 H 1.09003 * 117.51860 * 107.47922 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2006 0.0063 5 6 4.1854 0.0000 0.0010 6 6 5.6638 0.0000 0.0015 7 8 6.2713 -0.8186 0.6634 8 7 6.3379 0.9078 -0.7321 9 6 5.7342 2.0157 -1.4946 10 6 6.7681 2.3462 -2.5997 11 6 8.1078 2.1409 -1.8444 12 6 7.7971 0.9565 -0.9053 13 1 8.1510 0.0270 -1.3512 14 6 8.4748 1.1745 0.4490 15 7 9.9292 1.1747 0.2729 16 6 10.6784 -0.0809 0.3652 17 6 10.5884 2.3484 0.0221 18 1 10.0413 3.2792 -0.0082 19 6 11.9596 2.3420 -0.1934 20 7 12.6583 1.2526 0.0462 21 14 12.8145 3.8817 -0.8161 22 1 13.2504 4.7074 0.3387 23 1 13.9991 3.4975 -1.6250 24 1 11.8736 4.6645 -1.6571 25 6 3.4661 -1.2002 0.0009 26 6 4.1857 -2.5242 0.0018 27 6 3.3478 -3.7838 -0.2271 28 6 3.9066 -3.4791 1.1643 29 7 2.1453 -1.1537 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 3.9816 2.1494 0.0114 34 1 5.5793 2.8803 -0.8492 35 1 4.7901 1.7017 -1.9400 36 1 6.6637 3.3776 -2.9367 37 1 6.6814 1.6532 -3.4367 38 1 8.3670 3.0305 -1.2703 39 1 8.9068 1.8828 -2.5394 40 1 8.1914 0.3724 1.1305 41 1 8.1589 2.1319 0.8634 42 1 11.4060 -0.0113 1.1738 43 1 9.9893 -0.9013 0.5661 44 1 11.1971 -0.2645 -0.5757 45 1 13.6166 1.2482 -0.1041 46 1 5.1961 -2.5103 -0.4066 47 1 2.2762 -3.6547 -0.3788 48 1 3.8070 -4.5989 -0.7864 49 1 4.7334 -4.0938 1.5204 50 1 3.2028 -3.1494 1.9285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733939645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:46 Heat of formation + Delta-G solvation = 79.968958 kcal Electronic energy + Delta-G solvation = -31030.486293 eV Core-core repulsion = 27060.137368 eV Total energy + Delta-G solvation = -3970.348925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63403 -39.77907 -37.71780 -37.08681 -35.37028 -33.88411 -33.24955 -31.57636 -31.32219 -29.39612 -28.64929 -25.93449 -25.69035 -25.35659 -24.14061 -22.66382 -22.35721 -21.45335 -21.15568 -20.46959 -19.05904 -18.02566 -17.12882 -16.96237 -16.57290 -16.24520 -15.61103 -15.31383 -15.05329 -14.68187 -14.25075 -14.11763 -13.76245 -13.66414 -13.40925 -13.02832 -13.01110 -12.83659 -12.78322 -12.60317 -12.29925 -12.03045 -11.92345 -11.72916 -11.66415 -11.50045 -11.21022 -10.99984 -10.88634 -10.75553 -10.64950 -10.45898 -10.39890 -10.31074 -10.12250 -9.89192 -9.73727 -9.54429 -9.49767 -9.42134 -8.62652 -8.39981 -6.86949 -5.62070 -3.03533 0.31454 0.74754 2.72705 2.98191 3.33863 3.38410 3.43905 3.45807 3.54321 3.71670 3.81863 4.08427 4.34960 4.51312 4.63855 4.67942 4.79911 4.82818 4.88356 4.97070 5.03141 5.14678 5.17433 5.19752 5.40477 5.41897 5.52119 5.53905 5.60084 5.62406 5.66253 5.72797 5.78034 5.92752 5.96738 6.01883 6.03539 6.09558 6.27801 6.33253 6.54144 6.64249 6.67387 6.79034 6.89881 6.97016 7.63336 7.69681 7.72539 7.77679 7.98003 8.22166 8.40575 9.28859 9.92941 10.37285 11.37045 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.002901 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.567057 B = 9650.550468 C =10749.716469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.526 5.526 4 C 0.182 3.818 5 C -0.231 4.231 6 C 0.578 3.422 7 O -0.516 6.516 8 N -0.603 5.603 9 C 0.093 3.907 10 C -0.138 4.138 11 C -0.107 4.107 12 C 0.116 3.884 13 H 0.070 0.930 14 C 0.148 3.852 15 N -0.605 5.605 16 C 0.168 3.832 17 C -0.242 4.242 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.914 5.914 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.263 3.737 26 C -0.122 4.122 27 C -0.159 4.159 28 C -0.142 4.142 29 N -0.521 5.521 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.050 0.950 43 H -0.006 1.006 44 H 0.032 0.968 45 H 0.249 0.751 46 H 0.133 0.867 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.134 -3.370 -3.704 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 N -0.240 5.240 4 C 0.016 3.984 5 C -0.239 4.239 6 C 0.364 3.636 7 O -0.392 6.392 8 N -0.337 5.337 9 C -0.031 4.031 10 C -0.176 4.176 11 C -0.145 4.145 12 C 0.011 3.989 13 H 0.088 0.912 14 C 0.019 3.981 15 N -0.328 5.328 16 C 0.024 3.976 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.733 3.267 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.116 3.884 26 C -0.140 4.140 27 C -0.197 4.197 28 C -0.180 4.180 29 N -0.235 5.235 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.193 0.807 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.013 0.987 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.151 0.849 47 H 0.125 0.875 48 H 0.117 0.883 49 H 0.123 0.877 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.627 -3.888 -3.311 24.172 hybrid contribution 1.571 1.098 -0.459 1.971 sum -22.056 -2.790 -3.770 22.549 Atomic orbital electron populations 1.20607 0.85389 1.04343 1.04075 1.23433 0.98329 0.83288 0.88429 1.68305 1.09600 1.30018 1.16106 1.23674 0.89436 0.97945 0.87384 1.21554 0.96447 0.95998 1.09852 1.17321 0.85250 0.81082 0.79954 1.90821 1.68912 1.38409 1.41028 1.48661 1.08814 1.28352 1.47870 1.22522 0.97050 0.89707 0.93778 1.22849 0.95711 1.01987 0.97017 1.22568 0.95642 0.98571 0.97675 1.22794 0.76496 0.99025 1.00551 0.91212 1.21046 0.84606 0.99602 0.92825 1.43999 0.99829 1.05430 1.83569 1.21043 0.92173 0.83131 1.01238 1.19262 0.90554 0.86137 1.41168 0.90822 1.24836 0.96480 0.97133 1.01708 1.70242 1.06030 1.26617 1.53318 0.86276 0.79296 0.82495 0.78647 1.21715 1.21700 1.20694 1.20839 0.88399 0.93541 0.85593 1.21055 0.99939 0.85982 1.07074 1.23020 1.00455 0.96847 0.99330 1.22888 1.03124 1.00565 0.91434 1.68042 1.08919 1.30160 1.16429 0.89363 0.89373 0.89470 0.80717 0.91049 0.91367 0.90058 0.91099 0.89827 0.89879 0.92729 0.93967 0.93165 0.98724 0.94929 0.93995 0.84933 0.87500 0.88284 0.87744 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.31 36.00 0.37 -0.23 16 2 C 0.33 3.70 7.64 -157.07 -1.20 2.50 16 3 N -0.53 -6.20 10.32 -10.39 -0.11 -6.31 16 4 C 0.18 2.15 9.23 -16.77 -0.15 2.00 16 5 C -0.23 -3.15 5.47 -104.69 -0.57 -3.72 16 6 C 0.58 9.18 6.88 -12.33 -0.08 9.10 16 7 O -0.52 -9.81 13.84 5.32 0.07 -9.73 16 8 N -0.60 -9.03 3.06 -164.12 -0.50 -9.53 16 9 C 0.09 1.05 5.22 -2.53 -0.01 1.04 16 10 C -0.14 -1.60 7.08 -24.58 -0.17 -1.78 16 11 C -0.11 -1.71 5.54 -24.90 -0.14 -1.85 16 12 C 0.12 2.07 3.17 -66.95 -0.21 1.85 16 13 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.15 3.13 5.11 -4.04 -0.02 3.11 16 15 N -0.61 -15.15 2.85 -181.11 -0.52 -15.67 16 16 C 0.17 4.34 8.99 59.85 0.54 4.88 16 17 C -0.24 -6.39 8.59 -15.06 -0.13 -6.52 16 18 H 0.07 1.86 7.02 -52.49 -0.37 1.49 16 19 C -0.01 -0.15 5.42 -17.43 -0.09 -0.24 16 20 N -0.91 -26.47 9.53 55.49 0.53 -25.94 16 21 Si 0.90 21.46 29.57 -169.99 -5.03 16.44 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.26 3.52 6.51 -81.82 -0.53 2.98 16 26 C -0.12 -1.54 4.99 -91.77 -0.46 -2.00 16 27 C -0.16 -1.59 10.04 -26.73 -0.27 -1.86 16 28 C -0.14 -1.56 10.23 -26.73 -0.27 -1.83 16 29 N -0.52 -6.40 9.39 -6.68 -0.06 -6.46 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.18 1.71 5.87 -52.49 -0.31 1.40 16 34 H 0.07 0.71 7.35 -51.93 -0.38 0.33 16 35 H 0.07 0.68 6.69 -51.92 -0.35 0.34 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.08 1.44 6.57 -51.93 -0.34 1.10 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.05 1.23 6.42 -51.93 -0.33 0.89 16 41 H 0.04 0.88 7.98 -51.93 -0.41 0.47 16 42 H 0.05 1.41 6.88 -51.93 -0.36 1.05 16 43 H -0.01 -0.14 7.80 -51.93 -0.41 -0.55 16 44 H 0.03 0.89 7.23 -51.93 -0.38 0.51 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.13 1.88 6.67 -51.93 -0.35 1.53 16 47 H 0.11 1.06 7.62 -51.93 -0.40 0.66 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -31.56 394.13 -10.83 -42.39 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.74 Total: 1.45 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.42 Total: 7.42 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.66 Total: -63.90 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.56 -10.83 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733939645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.359 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds