Wall clock time and date at job start Wed Apr 1 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31887 * 118.94844 * 2 1 4 4 C 1.32138 * 120.96411 * 179.68031 * 3 2 1 5 5 C 1.39967 * 118.92003 * 0.56691 * 4 3 2 6 6 C 1.47839 * 120.93803 * 179.72034 * 5 4 3 7 7 O 1.21548 * 119.99879 * 140.78118 * 6 5 4 8 8 N 1.34777 * 119.99656 * 320.78197 * 6 5 4 9 9 C 1.47425 * 125.65151 * 4.96224 * 8 6 5 10 10 C 1.54905 * 104.83379 * 204.17407 * 9 8 6 11 11 C 1.55157 * 101.58234 * 322.99269 * 10 9 8 12 12 C 1.47025 * 125.64794 * 185.01577 * 8 6 5 13 13 H 1.09000 * 110.00957 * 59.39905 * 12 8 6 14 14 C 1.53002 * 109.88145 * 298.31264 * 12 8 6 15 15 N 1.46499 * 109.47018 * 178.03263 * 14 12 8 16 16 C 1.46501 * 120.00038 * 270.45587 * 15 14 12 17 17 C 1.36937 * 119.99836 * 90.46314 * 15 14 12 18 18 H 1.08001 * 120.00188 * 2.35196 * 17 15 14 19 19 C 1.38810 * 119.99700 * 182.36082 * 17 15 14 20 20 N 1.31622 * 120.00163 * 349.41452 * 19 17 15 21 21 Si 1.86801 * 119.99976 * 169.69584 * 19 17 15 22 22 H 1.48498 * 109.47561 * 89.99372 * 21 19 17 23 23 H 1.48502 * 109.47056 * 209.99673 * 21 19 17 24 24 H 1.48503 * 109.46963 * 329.99185 * 21 19 17 25 25 C 1.39928 * 118.12620 * 359.45000 * 5 4 3 26 26 C 1.50691 * 120.54199 * 180.29035 * 25 5 4 27 27 C 1.53001 * 117.49981 * 189.70690 * 26 25 5 28 28 C 1.53000 * 60.00104 * 252.51091 * 27 26 25 29 29 N 1.31855 * 118.95315 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47618 * 270.01876 * 1 2 3 31 31 H 1.08998 * 109.47600 * 30.02309 * 1 2 3 32 32 H 1.09003 * 109.46856 * 150.02118 * 1 2 3 33 33 H 1.07997 * 120.53964 * 180.31470 * 4 3 2 34 34 H 1.09004 * 110.36832 * 85.33480 * 9 8 6 35 35 H 1.09008 * 110.45760 * 323.06002 * 9 8 6 36 36 H 1.09001 * 111.00825 * 204.91344 * 10 9 8 37 37 H 1.09010 * 111.03593 * 81.07618 * 10 9 8 38 38 H 1.08998 * 110.71530 * 277.13715 * 11 10 9 39 39 H 1.09000 * 110.72253 * 153.86697 * 11 10 9 40 40 H 1.09000 * 109.46947 * 58.03002 * 14 12 8 41 41 H 1.09002 * 109.46718 * 298.03335 * 14 12 8 42 42 H 1.08999 * 109.47274 * 240.11127 * 16 15 14 43 43 H 1.09006 * 109.47116 * 0.11713 * 16 15 14 44 44 H 1.09003 * 109.47034 * 120.10801 * 16 15 14 45 45 H 0.96996 * 120.00114 * 180.02562 * 20 19 17 46 46 H 1.08999 * 115.54868 * 335.41822 * 26 25 5 47 47 H 1.08993 * 117.50019 * 0.02562 * 27 26 25 48 48 H 1.09005 * 117.49798 * 145.02482 * 27 26 25 49 49 H 1.09007 * 117.50406 * 252.50955 * 28 27 26 50 50 H 1.09003 * 117.51860 * 107.47922 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2006 0.0063 5 6 4.1854 0.0000 0.0010 6 6 5.6638 0.0000 0.0015 7 8 6.2713 -0.8186 0.6634 8 7 6.3379 0.9078 -0.7321 9 6 5.7342 2.0157 -1.4946 10 6 6.7681 2.3462 -2.5997 11 6 8.1078 2.1409 -1.8444 12 6 7.7971 0.9565 -0.9053 13 1 8.1510 0.0270 -1.3512 14 6 8.4748 1.1745 0.4490 15 7 9.9292 1.1747 0.2729 16 6 10.6784 -0.0809 0.3652 17 6 10.5884 2.3484 0.0221 18 1 10.0413 3.2792 -0.0082 19 6 11.9596 2.3420 -0.1934 20 7 12.6583 1.2526 0.0462 21 14 12.8145 3.8817 -0.8161 22 1 13.2504 4.7074 0.3387 23 1 13.9991 3.4975 -1.6250 24 1 11.8736 4.6645 -1.6571 25 6 3.4661 -1.2002 0.0009 26 6 4.1857 -2.5242 0.0018 27 6 3.3478 -3.7838 -0.2271 28 6 3.9066 -3.4791 1.1643 29 7 2.1453 -1.1537 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 3.9816 2.1494 0.0114 34 1 5.5793 2.8803 -0.8492 35 1 4.7901 1.7017 -1.9400 36 1 6.6637 3.3776 -2.9367 37 1 6.6814 1.6532 -3.4367 38 1 8.3670 3.0305 -1.2703 39 1 8.9068 1.8828 -2.5394 40 1 8.1914 0.3724 1.1305 41 1 8.1589 2.1319 0.8634 42 1 11.4060 -0.0113 1.1738 43 1 9.9893 -0.9013 0.5661 44 1 11.1971 -0.2645 -0.5757 45 1 13.6166 1.2482 -0.1041 46 1 5.1961 -2.5103 -0.4066 47 1 2.2762 -3.6547 -0.3788 48 1 3.8070 -4.5989 -0.7864 49 1 4.7334 -4.0938 1.5204 50 1 3.2028 -3.1494 1.9285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733939645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:45 Heat of formation + Delta-G solvation = 62.269328 kcal Electronic energy + Delta-G solvation = -31031.253806 eV Core-core repulsion = 27060.137368 eV Total energy + Delta-G solvation = -3971.116439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59408 -40.99599 -38.86474 -38.19127 -37.18670 -34.85302 -34.18902 -33.39114 -32.49662 -30.75057 -29.66842 -28.01629 -26.95421 -26.54692 -25.29415 -23.77538 -23.26856 -22.88255 -22.34684 -21.71279 -20.37457 -19.01836 -18.88115 -18.23138 -17.62716 -17.43576 -16.79471 -16.50395 -16.18881 -16.15146 -15.49918 -15.35619 -15.16471 -15.04636 -14.59489 -14.55963 -14.16601 -14.01131 -13.68078 -13.60140 -13.50518 -13.33478 -13.07135 -12.88041 -12.79004 -12.67558 -12.62865 -12.58749 -12.37353 -12.27997 -12.08178 -12.02715 -11.89060 -11.56885 -11.51617 -11.48190 -11.25576 -10.85652 -10.62655 -10.45881 -10.37293 -9.81321 -8.90259 -7.71487 -5.15569 -0.63379 -0.18138 1.49493 1.50495 1.55236 1.59636 1.79572 2.41423 2.54686 2.69334 2.87597 2.91142 3.19102 3.28208 3.38935 3.59225 3.70530 3.80655 3.83688 3.91294 4.01002 4.04199 4.05885 4.12433 4.27084 4.44116 4.45942 4.51547 4.59151 4.70044 4.71303 4.77785 4.81430 4.85128 4.88098 4.93027 4.95362 5.05624 5.07351 5.09783 5.15113 5.22611 5.31985 5.40162 5.43422 5.52363 5.63545 5.74355 5.80729 6.29899 6.44136 6.87474 6.99010 7.17614 7.88682 8.31688 9.28044 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.002901 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.567057 B = 9650.550468 C =10749.716469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.329 3.671 3 N -0.531 5.531 4 C 0.193 3.807 5 C -0.250 4.250 6 C 0.578 3.422 7 O -0.558 6.558 8 N -0.602 5.602 9 C 0.089 3.911 10 C -0.122 4.122 11 C -0.104 4.104 12 C 0.128 3.872 13 H 0.042 0.958 14 C 0.154 3.846 15 N -0.619 5.619 16 C 0.189 3.811 17 C -0.239 4.239 18 H 0.088 0.912 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.970 3.030 22 H -0.291 1.291 23 H -0.300 1.300 24 H -0.261 1.261 25 C 0.256 3.744 26 C -0.145 4.145 27 C -0.135 4.135 28 C -0.142 4.142 29 N -0.526 5.526 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.197 0.803 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.022 0.978 43 H 0.006 0.994 44 H 0.011 0.989 45 H 0.242 0.758 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.107 0.893 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.474 -1.468 -4.898 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 N -0.245 5.245 4 C 0.026 3.974 5 C -0.258 4.258 6 C 0.366 3.634 7 O -0.437 6.437 8 N -0.335 5.335 9 C -0.032 4.032 10 C -0.160 4.160 11 C -0.142 4.142 12 C 0.023 3.977 13 H 0.060 0.940 14 C 0.027 3.973 15 N -0.343 5.343 16 C 0.044 3.956 17 C -0.368 4.368 18 H 0.105 0.895 19 C -0.258 4.258 20 N -0.600 5.600 21 Si 0.798 3.202 22 H -0.218 1.218 23 H -0.227 1.227 24 H -0.185 1.185 25 C 0.110 3.890 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.180 4.180 29 N -0.241 5.241 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.214 0.786 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.024 0.976 44 H 0.029 0.971 45 H 0.052 0.948 46 H 0.127 0.873 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.125 0.875 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.051 -1.955 -4.527 27.496 hybrid contribution 2.484 0.454 -0.019 2.525 sum -24.566 -1.501 -4.545 25.028 Atomic orbital electron populations 1.20785 0.82461 1.05643 1.05307 1.24293 1.00053 0.82814 0.86515 1.68446 1.09297 1.30174 1.16609 1.23975 0.89571 0.97945 0.85894 1.21349 0.94744 0.97133 1.12551 1.17694 0.86268 0.80342 0.79109 1.90795 1.70003 1.40035 1.42847 1.48614 1.07542 1.29302 1.48064 1.22820 0.97529 0.89086 0.93765 1.22834 0.92412 1.04096 0.96673 1.22426 0.97727 0.96843 0.97224 1.22247 0.78348 0.98777 0.98369 0.93993 1.21041 0.82823 0.99021 0.94457 1.44179 1.01468 1.04811 1.83847 1.20661 0.91719 0.84237 0.98971 1.19631 0.90729 0.86888 1.39569 0.89452 1.25656 0.97383 1.00140 1.02672 1.70445 1.05739 1.28808 1.55046 0.85216 0.77994 0.79079 0.77899 1.21833 1.22660 1.18499 1.20972 0.89063 0.93639 0.85307 1.20992 0.99521 0.87102 1.08775 1.23083 1.00393 0.95491 0.98258 1.22930 1.03312 1.00042 0.91751 1.68139 1.08130 1.30759 1.17111 0.87925 0.87944 0.88289 0.78634 0.88662 0.89211 0.86963 0.90525 0.90722 0.91811 0.94666 0.93428 0.95934 0.97595 0.97073 0.94777 0.87269 0.86908 0.86735 0.87488 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.31 71.23 0.73 -0.17 16 2 C 0.33 6.49 7.64 138.70 1.06 7.55 16 3 N -0.53 -11.02 10.32 -186.79 -1.93 -12.94 16 4 C 0.19 4.09 9.23 85.07 0.79 4.88 16 5 C -0.25 -6.60 5.47 -19.91 -0.11 -6.71 16 6 C 0.58 18.50 6.88 86.78 0.60 19.09 16 7 O -0.56 -22.22 13.84 -3.87 -0.05 -22.27 16 8 N -0.60 -17.60 3.06 -791.44 -2.43 -20.02 16 9 C 0.09 1.75 5.22 86.85 0.45 2.21 16 10 C -0.12 -2.47 7.08 31.98 0.23 -2.25 16 11 C -0.10 -3.23 5.54 31.78 0.18 -3.05 16 12 C 0.13 4.62 3.17 45.34 0.14 4.76 16 13 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 14 C 0.15 6.66 5.11 86.38 0.44 7.10 16 15 N -0.62 -31.91 2.85 -726.92 -2.07 -33.97 16 16 C 0.19 10.26 8.99 127.77 1.15 11.40 16 17 C -0.24 -12.71 8.59 84.03 0.72 -11.99 16 18 H 0.09 4.33 7.02 -2.91 -0.02 4.31 16 19 C -0.07 -3.67 5.42 84.86 0.46 -3.21 16 20 N -0.95 -56.97 9.53 21.65 0.21 -56.76 16 21 Si 0.97 44.41 29.57 68.60 2.03 46.44 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 25 C 0.26 6.70 6.51 42.91 0.28 6.98 16 26 C -0.14 -3.71 4.99 -11.54 -0.06 -3.76 16 27 C -0.14 -2.57 10.04 30.59 0.31 -2.26 16 28 C -0.14 -3.11 10.23 30.60 0.31 -2.80 16 29 N -0.53 -12.03 9.39 -175.04 -1.64 -13.67 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.20 3.14 5.87 -2.91 -0.02 3.13 16 34 H 0.10 1.48 7.35 -2.39 -0.02 1.46 16 35 H 0.09 1.45 6.69 -2.38 -0.02 1.43 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 2.46 6.57 -2.39 -0.02 2.44 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.03 1.65 6.42 -2.39 -0.02 1.63 16 41 H 0.05 1.98 7.98 -2.39 -0.02 1.97 16 42 H 0.02 1.32 6.88 -2.39 -0.02 1.31 16 43 H 0.01 0.28 7.80 -2.38 -0.02 0.26 16 44 H 0.01 0.63 7.23 -2.39 -0.02 0.61 16 45 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.11 3.30 6.67 -2.39 -0.02 3.28 16 47 H 0.11 2.03 7.62 -2.39 -0.02 2.01 16 48 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 50 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -71.50 394.13 2.75 -68.75 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.95 Total: 16.69 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 7.68 Total: 27.76 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -7.86 Total: -137.38 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.50 2.75 -68.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733939645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.024 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds