Wall clock time and date at job start Wed Apr 1 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21774 * 119.99573 * 359.97438 * 18 17 5 20 20 C 1.46282 * 120.00026 * 179.97438 * 18 17 5 21 21 N 1.34887 * 126.50026 * 0.02684 * 20 18 17 22 22 C 1.30184 * 109.73420 * 179.97438 * 21 20 18 23 23 N 1.36249 * 109.82375 * 359.97438 * 22 21 20 24 24 C 1.36529 * 132.78367 * 179.97438 * 23 22 21 25 25 C 1.35034 * 120.59255 * 179.30513 * 24 23 22 26 26 C 1.40389 * 120.44431 * 0.58515 * 25 24 23 27 27 C 1.50701 * 120.22236 * 179.65037 * 26 25 24 28 28 C 1.36335 * 119.55553 * 359.63160 * 26 25 24 29 29 C 1.37276 * 107.18108 * 359.75699 * 23 22 21 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.08005 * 125.08586 * 180.02562 * 22 21 20 45 45 H 1.07995 * 119.70451 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.77664 * 180.19205 * 25 24 23 47 47 H 1.09004 * 109.47149 * 269.98075 * 27 26 25 48 48 H 1.09001 * 109.46924 * 29.97480 * 27 26 25 49 49 H 1.08994 * 109.47246 * 149.98277 * 27 26 25 50 50 H 1.08000 * 120.39564 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.3558 6.0853 -1.2500 15 1 9.9653 7.5073 0.6751 16 1 10.3874 5.1393 0.9827 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6974 4.0740 -0.4322 20 6 2.0894 4.7599 -2.6185 21 7 2.8428 4.8713 -3.7318 22 6 2.1792 5.5135 -4.6493 23 7 0.9484 5.8554 -4.1753 24 6 -0.1058 6.5234 -4.7289 25 6 -1.2417 6.7185 -4.0253 26 6 -1.3518 6.2476 -2.7073 27 6 -2.6190 6.4750 -1.9239 28 6 -0.3049 5.5827 -2.1411 29 6 0.8636 5.3832 -2.8891 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 7.4035 7.7129 -0.2771 43 1 4.3127 3.5646 -1.9981 44 1 2.5486 5.7406 -5.6385 45 1 -0.0347 6.8895 -5.7424 46 1 -2.0687 7.2460 -4.4773 47 1 -2.5484 7.4200 -1.3852 48 1 -3.4675 6.5089 -2.6073 49 1 -2.7575 5.6609 -1.2126 50 1 -0.3748 5.2150 -1.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734093604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:38 Heat of formation + Delta-G solvation = 41.428301 kcal Electronic energy + Delta-G solvation = -30393.730413 eV Core-core repulsion = 26421.710239 eV Total energy + Delta-G solvation = -3972.020173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.86715 -39.37384 -37.91369 -36.32735 -34.79524 -34.11168 -33.35143 -31.36679 -31.16566 -30.28110 -29.61127 -27.36735 -26.67356 -24.19175 -23.89763 -23.01302 -22.17394 -22.06800 -20.62896 -20.37924 -19.78501 -18.22480 -17.08900 -16.74929 -16.26408 -16.14660 -15.99347 -15.40653 -15.01030 -14.65221 -14.52894 -14.41402 -14.24753 -13.74961 -13.74433 -13.40727 -13.21239 -13.06748 -12.77398 -12.63074 -12.53126 -12.27575 -11.95640 -11.84276 -11.77243 -11.70519 -11.21120 -10.98772 -10.83293 -10.75913 -10.70980 -10.48356 -10.43015 -10.25718 -10.17874 -9.91826 -9.63315 -9.54396 -9.48293 -8.82420 -8.43582 -7.52697 -6.85438 -5.68275 -2.97715 0.52111 0.97637 2.39544 2.47986 3.12271 3.48270 3.52947 3.54967 3.69241 3.92951 4.17901 4.38886 4.49742 4.53876 4.63939 4.70971 4.88994 4.96789 5.15339 5.20240 5.27328 5.32900 5.34940 5.40853 5.52200 5.54293 5.58829 5.64507 5.66635 5.75043 5.81824 5.93172 5.97908 6.07256 6.08552 6.13663 6.16515 6.27552 6.31017 6.33994 6.40680 6.44797 6.59472 6.61392 6.76320 6.84451 6.98507 7.14038 7.64287 7.76189 8.16984 8.49195 8.75871 9.60831 10.18514 10.53874 11.53951 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.003544 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.331273 B = 7898.729457 C =10374.107071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.126 4.126 5 C 0.139 3.861 6 H 0.087 0.913 7 C 0.145 3.855 8 N -0.730 5.730 9 C -0.240 4.240 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.693 5.693 18 C 0.606 3.394 19 O -0.550 6.550 20 C -0.053 4.053 21 N -0.410 5.410 22 C 0.142 3.858 23 N -0.369 5.369 24 C 0.053 3.947 25 C -0.131 4.131 26 C -0.089 4.089 27 C -0.110 4.110 28 C -0.068 4.068 29 C 0.076 3.924 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.033 0.967 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.411 0.589 44 H 0.216 0.784 45 H 0.168 0.832 46 H 0.149 0.851 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 -4.873 -9.466 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.106 0.894 7 C 0.017 3.983 8 N -0.375 5.375 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.208 1.208 17 N -0.343 5.343 18 C 0.393 3.607 19 O -0.429 6.429 20 C -0.188 4.188 21 N -0.124 5.124 22 C -0.134 4.134 23 N -0.040 5.040 24 C -0.069 4.069 25 C -0.152 4.152 26 C -0.092 4.092 27 C -0.167 4.167 28 C -0.087 4.087 29 C -0.036 4.036 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.247 0.753 44 H 0.232 0.768 45 H 0.185 0.815 46 H 0.166 0.834 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.133 -5.238 -8.962 23.545 hybrid contribution 0.537 1.034 -0.581 1.302 sum -20.596 -4.204 -9.543 23.086 Atomic orbital electron populations 1.21735 0.96373 1.00708 1.01787 1.21575 0.95524 0.97906 1.01280 1.21664 0.94826 0.95156 1.03262 1.21977 0.96087 0.96378 1.02082 1.21309 0.96006 0.92397 0.86896 0.89447 1.20958 0.89351 0.89386 0.98649 1.42353 1.05426 1.02076 1.87666 1.19214 0.83744 0.92390 1.41778 0.91195 1.24744 0.97543 0.95702 1.02894 1.69689 1.32746 0.98890 1.56466 0.86199 0.85330 0.77174 0.77527 1.21785 1.21880 1.20806 1.45714 1.15579 1.55903 1.17092 1.16375 0.82168 0.77488 0.84657 1.90771 1.52044 1.60964 1.39136 1.20600 0.91336 1.10972 0.95858 1.70109 1.29351 1.13423 0.99491 1.25055 0.81124 1.05520 1.01727 1.43037 1.12952 1.35924 1.12122 1.21634 0.86714 0.98429 1.00084 1.20775 0.97391 1.02328 0.94746 1.19915 0.96798 0.98143 0.94365 1.20753 0.93358 1.02946 0.99612 1.20653 0.89311 0.98047 1.00733 1.19250 0.97246 1.01735 0.85342 0.93051 0.93432 0.92809 0.92683 0.92468 0.91502 0.91709 0.92006 0.91197 0.95844 0.94952 0.77903 0.93630 0.75341 0.76755 0.81462 0.83376 0.90627 0.91272 0.90878 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.15 0.37 -1.28 16 2 C -0.13 -1.51 5.93 -26.73 -0.16 -1.67 16 3 C -0.11 -1.62 3.81 -26.73 -0.10 -1.73 16 4 C -0.13 -1.87 4.89 -26.73 -0.13 -2.00 16 5 C 0.14 2.51 2.41 -67.93 -0.16 2.34 16 6 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 7 C 0.14 2.99 5.82 -4.04 -0.02 2.97 16 8 N -0.73 -19.11 5.43 -59.91 -0.33 -19.44 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 13 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 N -0.69 -12.88 4.47 -55.23 -0.25 -13.13 16 18 C 0.61 11.42 6.34 -13.03 -0.08 11.34 16 19 O -0.55 -10.74 12.88 5.12 0.07 -10.68 16 20 C -0.05 -0.93 7.05 -82.57 -0.58 -1.52 16 21 N -0.41 -6.85 10.90 -10.53 -0.11 -6.97 16 22 C 0.14 1.81 12.73 -89.52 -1.14 0.67 16 23 N -0.37 -4.49 2.94 -62.18 -0.18 -4.68 16 24 C 0.05 0.44 10.95 -16.60 -0.18 0.26 16 25 C -0.13 -1.00 9.67 -39.91 -0.39 -1.39 16 26 C -0.09 -0.85 5.89 -104.50 -0.62 -1.47 16 27 C -0.11 -0.74 10.03 36.01 0.36 -0.38 16 28 C -0.07 -0.88 9.38 -39.54 -0.37 -1.25 16 29 C 0.08 1.15 6.72 -83.98 -0.56 0.59 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.05 7.84 -51.93 -0.41 0.65 16 36 H 0.06 1.06 5.64 -51.93 -0.29 0.76 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.39 10.92 7.33 -40.82 -0.30 10.62 16 42 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.41 7.91 8.30 -40.82 -0.34 7.57 16 44 H 0.22 1.75 8.06 -52.48 -0.42 1.33 16 45 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 49 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 50 H 0.16 2.14 7.17 -52.49 -0.38 1.76 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -35.18 409.37 -10.94 -46.12 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -7.99 Total: 15.04 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.02 Total: -2.02 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -0.15 Total: -72.56 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.18 -10.94 -46.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734093604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.547 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds