Wall clock time and date at job start Wed Apr 1 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21774 * 119.99573 * 359.97438 * 18 17 5 20 20 C 1.46282 * 120.00026 * 179.97438 * 18 17 5 21 21 N 1.34887 * 126.50026 * 0.02684 * 20 18 17 22 22 C 1.30184 * 109.73420 * 179.97438 * 21 20 18 23 23 N 1.36249 * 109.82375 * 359.97438 * 22 21 20 24 24 C 1.36529 * 132.78367 * 179.97438 * 23 22 21 25 25 C 1.35034 * 120.59255 * 179.30513 * 24 23 22 26 26 C 1.40389 * 120.44431 * 0.58515 * 25 24 23 27 27 C 1.50701 * 120.22236 * 179.65037 * 26 25 24 28 28 C 1.36335 * 119.55553 * 359.63160 * 26 25 24 29 29 C 1.37276 * 107.18108 * 359.75699 * 23 22 21 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.08005 * 125.08586 * 180.02562 * 22 21 20 45 45 H 1.07995 * 119.70451 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.77664 * 180.19205 * 25 24 23 47 47 H 1.09004 * 109.47149 * 269.98075 * 27 26 25 48 48 H 1.09001 * 109.46924 * 29.97480 * 27 26 25 49 49 H 1.08994 * 109.47246 * 149.98277 * 27 26 25 50 50 H 1.08000 * 120.39564 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.3558 6.0853 -1.2500 15 1 9.9653 7.5073 0.6751 16 1 10.3874 5.1393 0.9827 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6974 4.0740 -0.4322 20 6 2.0894 4.7599 -2.6185 21 7 2.8428 4.8713 -3.7318 22 6 2.1792 5.5135 -4.6493 23 7 0.9484 5.8554 -4.1753 24 6 -0.1058 6.5234 -4.7289 25 6 -1.2417 6.7185 -4.0253 26 6 -1.3518 6.2476 -2.7073 27 6 -2.6190 6.4750 -1.9239 28 6 -0.3049 5.5827 -2.1411 29 6 0.8636 5.3832 -2.8891 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 7.4035 7.7129 -0.2771 43 1 4.3127 3.5646 -1.9981 44 1 2.5486 5.7406 -5.6385 45 1 -0.0347 6.8895 -5.7424 46 1 -2.0687 7.2460 -4.4773 47 1 -2.5484 7.4200 -1.3852 48 1 -3.4675 6.5089 -2.6073 49 1 -2.7575 5.6609 -1.2126 50 1 -0.3748 5.2150 -1.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734093604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:37 Heat of formation + Delta-G solvation = 20.029046 kcal Electronic energy + Delta-G solvation = -30394.658354 eV Core-core repulsion = 26421.710239 eV Total energy + Delta-G solvation = -3972.948115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.82990 -40.76500 -38.79229 -37.80835 -36.26518 -35.10662 -34.96294 -33.00676 -32.19929 -31.79005 -30.44113 -28.79376 -27.77889 -25.90704 -24.87283 -24.05256 -23.76585 -22.96612 -21.85114 -21.71466 -21.11641 -19.40700 -19.02335 -17.73675 -17.42155 -17.30136 -17.07168 -16.68815 -16.41110 -15.95684 -15.75771 -15.57423 -15.22850 -15.14690 -15.12228 -14.68057 -14.46322 -14.34983 -14.12832 -13.82149 -13.50634 -13.41886 -13.15708 -12.95070 -12.86965 -12.79755 -12.67891 -12.50620 -12.47702 -12.12882 -12.01736 -11.87853 -11.85568 -11.53024 -11.43280 -11.40302 -11.33160 -11.00869 -10.87864 -10.35184 -9.88907 -9.01665 -8.49632 -7.93451 -5.24088 -0.35995 0.10733 1.32986 1.46111 1.49061 1.51344 1.57397 2.28113 2.36691 2.56198 2.65645 3.39588 3.42682 3.44065 3.63794 3.71471 3.81479 3.82990 4.01539 4.07680 4.14139 4.20865 4.29819 4.33189 4.36434 4.54818 4.56075 4.60328 4.69096 4.80029 4.83477 4.85239 4.89546 4.94234 4.99185 5.00522 5.07984 5.13988 5.16135 5.21939 5.28773 5.33626 5.40031 5.43231 5.49154 5.56097 5.58900 5.68847 6.15288 6.25945 6.51362 6.80342 7.32445 7.34958 8.06566 8.30899 9.29874 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.003544 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.331273 B = 7898.729457 C =10374.107071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.061 0.939 7 C 0.146 3.854 8 N -0.744 5.744 9 C -0.245 4.245 10 H 0.081 0.919 11 C -0.077 4.077 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.286 1.286 15 H -0.297 1.297 16 H -0.267 1.267 17 N -0.697 5.697 18 C 0.601 3.399 19 O -0.573 6.573 20 C -0.121 4.121 21 N -0.449 5.449 22 C 0.148 3.852 23 N -0.371 5.371 24 C 0.063 3.937 25 C -0.136 4.136 26 C -0.053 4.053 27 C -0.113 4.113 28 C -0.126 4.126 29 C 0.080 3.920 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.405 0.595 44 H 0.260 0.740 45 H 0.220 0.780 46 H 0.198 0.802 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.067 0.933 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.345 -4.832 -11.692 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.079 0.921 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.376 4.376 10 H 0.098 0.902 11 C -0.269 4.269 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.213 1.213 15 H -0.224 1.224 16 H -0.192 1.192 17 N -0.346 5.346 18 C 0.390 3.610 19 O -0.454 6.454 20 C -0.252 4.252 21 N -0.164 5.164 22 C -0.129 4.129 23 N -0.042 5.042 24 C -0.058 4.058 25 C -0.156 4.156 26 C -0.057 4.057 27 C -0.170 4.170 28 C -0.145 4.145 29 C -0.034 4.034 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.240 0.760 44 H 0.276 0.724 45 H 0.236 0.764 46 H 0.215 0.785 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.086 0.914 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.760 -5.267 -11.165 25.892 hybrid contribution 0.788 1.122 0.002 1.371 sum -21.972 -4.145 -11.163 24.991 Atomic orbital electron populations 1.21718 0.95645 1.01855 1.01199 1.21541 0.96195 0.95822 1.02242 1.21519 0.94532 0.96717 1.01243 1.21912 0.96214 0.94028 1.03340 1.21176 0.94196 0.94206 0.86150 0.92103 1.21110 0.90936 0.86842 0.99167 1.42550 1.04655 1.03754 1.87685 1.19676 0.84955 0.92773 1.40240 0.90161 1.25638 1.02222 0.95590 1.03492 1.69883 1.34845 0.98999 1.58402 0.85071 0.79795 0.76790 0.77658 1.21276 1.22413 1.19175 1.45691 1.15641 1.56509 1.16743 1.16692 0.81800 0.77133 0.85350 1.90722 1.52519 1.62004 1.40152 1.20397 0.93498 1.15193 0.96150 1.69960 1.30923 1.15279 1.00205 1.25870 0.80904 1.03834 1.02321 1.43269 1.13842 1.35977 1.11066 1.22703 0.85267 0.95877 1.01981 1.21385 0.98694 1.01970 0.93539 1.20449 0.96103 0.93898 0.95274 1.20903 0.92822 1.03160 1.00084 1.20571 0.90741 1.02582 1.00651 1.19382 0.96750 1.00530 0.86737 0.93974 0.91315 0.93158 0.91980 0.91091 0.93386 0.93990 0.91044 0.89346 0.94704 0.94015 0.79648 0.94239 0.76009 0.72429 0.76374 0.78521 0.89625 0.88072 0.91388 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.12 -2.88 5.93 30.59 0.18 -2.70 16 3 C -0.10 -3.15 3.81 30.60 0.12 -3.03 16 4 C -0.12 -3.55 4.89 30.60 0.15 -3.40 16 5 C 0.15 5.70 2.41 44.99 0.11 5.81 16 6 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 7 C 0.15 6.24 5.82 86.38 0.50 6.74 16 8 N -0.74 -40.50 5.43 -343.46 -1.87 -42.37 16 9 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 10 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 11 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 12 N -0.97 -62.88 13.06 21.65 0.28 -62.60 16 13 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 14 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 15 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 17 N -0.70 -28.34 4.47 -446.84 -2.00 -30.34 16 18 C 0.60 25.17 6.34 86.33 0.55 25.72 16 19 O -0.57 -25.08 12.88 -4.59 -0.06 -25.14 16 20 C -0.12 -4.65 7.05 41.23 0.29 -4.36 16 21 N -0.45 -15.95 10.90 -187.24 -2.04 -17.99 16 22 C 0.15 3.70 12.73 179.97 2.29 5.99 16 23 N -0.37 -8.61 2.94 -350.65 -1.03 -9.64 16 24 C 0.06 0.78 10.95 83.22 0.91 1.69 16 25 C -0.14 -1.48 9.67 22.06 0.21 -1.27 16 26 C -0.05 -0.92 5.89 -19.78 -0.12 -1.04 16 27 C -0.11 -1.25 10.03 71.24 0.71 -0.54 16 28 C -0.13 -3.45 9.38 22.30 0.21 -3.24 16 29 C 0.08 2.55 6.72 39.23 0.26 2.82 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.04 1.49 5.64 -2.39 -0.01 1.48 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 38 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 39 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.37 22.30 7.33 -92.71 -0.68 21.62 16 42 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.41 17.07 8.30 -92.70 -0.77 16.30 16 44 H 0.26 3.56 8.06 -2.91 -0.02 3.53 16 45 H 0.22 0.44 8.06 -2.91 -0.02 0.41 16 46 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 47 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.10 0.53 8.10 -2.39 -0.02 0.51 16 49 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 50 H 0.14 4.19 7.17 -2.91 -0.02 4.17 16 Total: -1.00 -83.69 409.37 3.22 -80.46 By element: Atomic # 1 Polarization: 49.11 SS G_CDS: -0.50 Total: 48.62 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 8.40 Total: 9.04 kcal Atomic # 7 Polarization: -156.29 SS G_CDS: -6.65 Total: -162.94 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.14 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -83.69 3.22 -80.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734093604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.493 kcal (2) G-P(sol) polarization free energy of solvation -83.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds