Wall clock time and date at job start Wed Apr 1 2020 03:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 C 1.53007 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47262 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46812 * 304.99956 * 5 4 3 7 7 C 1.52999 * 109.47114 * 184.99769 * 5 4 3 8 8 N 1.46500 * 109.47226 * 184.99495 * 7 5 4 9 9 C 1.36937 * 119.99856 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99459 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00523 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99684 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47354 * 59.99845 * 13 11 9 15 15 H 1.48501 * 109.47240 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47241 * 299.99811 * 13 11 9 17 17 N 1.46498 * 109.47036 * 65.00021 * 5 4 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 5 4 19 19 O 1.21773 * 120.00065 * 0.28019 * 18 17 5 20 20 C 1.46293 * 120.00176 * 180.27650 * 18 17 5 21 21 N 1.34888 * 126.49197 * 0.02926 * 20 18 17 22 22 C 1.30182 * 109.73039 * 179.97438 * 21 20 18 23 23 N 1.36251 * 109.82393 * 0.02562 * 22 21 20 24 24 C 1.36535 * 132.78865 * 180.02562 * 23 22 21 25 25 C 1.35028 * 120.59649 * 179.23801 * 24 23 22 26 26 C 1.40391 * 120.44176 * 0.61333 * 25 24 23 27 27 C 1.50704 * 120.21728 * 179.63403 * 26 25 24 28 28 C 1.36333 * 119.55859 * 359.60665 * 26 25 24 29 29 C 1.37279 * 107.18137 * 359.72507 * 23 22 21 30 30 H 1.09000 * 109.47537 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46732 * 299.99992 * 1 2 3 32 32 H 1.09005 * 109.47125 * 59.99518 * 1 2 3 33 33 H 1.09000 * 109.46732 * 240.00007 * 2 1 3 34 34 H 1.08997 * 109.46919 * 120.00701 * 2 1 3 35 35 H 1.09000 * 109.47261 * 60.00332 * 3 2 1 36 36 H 1.08997 * 109.47610 * 299.99657 * 3 2 1 37 37 H 1.09000 * 109.47004 * 59.99954 * 4 3 2 38 38 H 1.09005 * 109.47038 * 300.00314 * 4 3 2 39 39 H 1.08995 * 109.47415 * 304.99804 * 7 5 4 40 40 H 1.09008 * 109.47087 * 65.00143 * 7 5 4 41 41 H 0.96998 * 120.00120 * 0.02562 * 8 7 5 42 42 H 0.96991 * 119.99962 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 5 4 44 44 H 1.08002 * 125.09299 * 180.02562 * 22 21 20 45 45 H 1.08006 * 119.69472 * 359.94946 * 24 23 22 46 46 H 1.07997 * 119.77556 * 180.20119 * 25 24 23 47 47 H 1.09001 * 109.46628 * 269.97424 * 27 26 25 48 48 H 1.08993 * 109.47596 * 29.97314 * 27 26 25 49 49 H 1.08999 * 109.47080 * 149.97861 * 27 26 25 50 50 H 1.08002 * 120.39937 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 0.0000 6 1 3.6452 3.4244 -0.8414 7 6 5.6049 2.8866 -0.1263 8 7 6.1033 4.2590 -0.0061 9 6 7.4472 4.5090 -0.0876 10 1 8.1396 3.6946 -0.2409 11 6 7.9193 5.8094 0.0269 12 7 7.0755 6.8019 0.2143 13 14 9.7525 6.1506 -0.0850 14 1 10.2603 5.6994 -1.4056 15 1 9.9950 7.6078 0.0665 16 1 10.4596 5.4158 0.9945 17 7 3.6932 3.5391 1.2524 18 6 2.4780 4.1109 1.3664 19 8 1.6999 4.0792 0.4302 20 6 2.0938 4.7695 2.6149 21 7 2.8478 4.8817 3.7277 22 6 2.1866 5.5295 4.6431 23 7 0.9571 5.8744 4.1680 24 6 -0.0947 6.5482 4.7194 25 6 -1.2188 6.7706 4.0050 26 6 -1.3285 6.3007 2.6867 27 6 -2.5886 6.5448 1.8969 28 6 -0.2873 5.6227 2.1255 29 6 0.8749 5.4084 2.8794 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8909 38 1 3.9338 0.9283 0.8891 39 1 6.0358 2.2730 0.6648 40 1 5.8896 2.4805 -1.0970 41 1 5.4814 4.9905 0.1321 42 1 7.4055 7.7105 0.2939 43 1 4.3130 3.5643 1.9981 44 1 2.5572 5.7593 5.6312 45 1 -0.0225 6.9164 5.7321 46 1 -2.0415 7.3079 4.4532 47 1 -3.2816 5.7182 2.0540 48 1 -3.0509 7.4745 2.2283 49 1 -2.3446 6.6179 0.8370 50 1 -0.3572 5.2548 1.1125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734093605.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:42 Heat of formation + Delta-G solvation = 41.452547 kcal Electronic energy + Delta-G solvation = -30392.753807 eV Core-core repulsion = 26420.734685 eV Total energy + Delta-G solvation = -3972.019122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86484 -39.37035 -37.91167 -36.32784 -34.79407 -34.10897 -33.34929 -31.36557 -31.16440 -30.28037 -29.60954 -27.36577 -26.67195 -24.18977 -23.89530 -23.01062 -22.17182 -22.06576 -20.62768 -20.37706 -19.78461 -18.22284 -17.08782 -16.74740 -16.26150 -16.14263 -15.99246 -15.40604 -15.00737 -14.65037 -14.52701 -14.41562 -14.24170 -13.75535 -13.74447 -13.40328 -13.21023 -13.06681 -12.76845 -12.62931 -12.53269 -12.27349 -11.95492 -11.84229 -11.76503 -11.70548 -11.20916 -10.98652 -10.83131 -10.74821 -10.70130 -10.48186 -10.43017 -10.27649 -10.17981 -9.93032 -9.62880 -9.54305 -9.48117 -8.81800 -8.43622 -7.52541 -6.85388 -5.67946 -2.97437 0.52272 0.97895 2.39623 2.48258 3.12486 3.48961 3.52837 3.54188 3.69250 3.93245 4.18137 4.39112 4.49924 4.54077 4.64115 4.71368 4.89229 4.96857 5.15393 5.20926 5.27414 5.32035 5.35005 5.41289 5.52311 5.54563 5.58926 5.64598 5.66745 5.75333 5.82093 5.93237 5.97959 6.07335 6.08661 6.13733 6.16806 6.27608 6.31102 6.34182 6.40879 6.44982 6.59521 6.61481 6.76338 6.84506 6.98703 7.14154 7.64491 7.75894 8.17121 8.49480 8.75994 9.61048 10.18743 10.54135 11.54203 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.003559 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.958040 B = 7866.176348 C =10357.046643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.139 3.861 6 H 0.088 0.912 7 C 0.145 3.855 8 N -0.730 5.730 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.693 5.693 18 C 0.607 3.393 19 O -0.550 6.550 20 C -0.053 4.053 21 N -0.410 5.410 22 C 0.142 3.858 23 N -0.369 5.369 24 C 0.053 3.947 25 C -0.131 4.131 26 C -0.089 4.089 27 C -0.110 4.110 28 C -0.068 4.068 29 C 0.077 3.923 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.033 0.967 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.411 0.589 44 H 0.216 0.784 45 H 0.168 0.832 46 H 0.149 0.851 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.669 -4.750 9.424 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.106 0.894 7 C 0.017 3.983 8 N -0.375 5.375 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.343 5.343 18 C 0.393 3.607 19 O -0.429 6.429 20 C -0.188 4.188 21 N -0.124 5.124 22 C -0.134 4.134 23 N -0.040 5.040 24 C -0.069 4.069 25 C -0.152 4.152 26 C -0.092 4.092 27 C -0.167 4.167 28 C -0.087 4.087 29 C -0.036 4.036 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.247 0.753 44 H 0.232 0.768 45 H 0.185 0.815 46 H 0.166 0.834 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.097 -5.113 8.931 23.474 hybrid contribution 0.540 1.015 0.582 1.289 sum -20.557 -4.098 9.514 23.020 Atomic orbital electron populations 1.21737 0.96375 1.00708 1.01787 1.21572 0.95523 0.97902 1.01283 1.21660 0.94830 0.95159 1.03252 1.21977 0.96081 0.96375 1.02081 1.21309 0.96004 0.92405 0.86891 0.89443 1.20960 0.89354 0.89386 0.98647 1.42341 1.05375 1.02072 1.87717 1.19169 0.83713 0.92428 1.41923 0.91246 1.24742 0.97528 0.95707 1.02846 1.69673 1.32853 0.98950 1.56327 0.86277 0.85349 0.76804 0.77782 1.21339 1.21791 1.21308 1.45714 1.15719 1.55757 1.17098 1.16378 0.82166 0.77501 0.84639 1.90770 1.51969 1.61094 1.39089 1.20603 0.91583 1.10691 0.95897 1.70110 1.29229 1.13448 0.99580 1.25054 0.81115 1.05492 1.01760 1.43041 1.13042 1.35980 1.11980 1.21635 0.87000 0.98177 1.00064 1.20774 0.97595 1.02310 0.94545 1.19915 0.96792 0.98108 0.94419 1.20752 0.93835 1.02185 0.99899 1.20653 0.89389 0.97811 1.00872 1.19248 0.97406 1.01674 0.85240 0.93430 0.93054 0.92808 0.92466 0.92680 0.91719 0.91505 0.91199 0.92005 0.95853 0.94954 0.77907 0.93573 0.75342 0.76758 0.81464 0.83377 0.90754 0.91221 0.90806 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.13 -1.51 5.93 -26.73 -0.16 -1.67 16 3 C -0.11 -1.62 3.82 -26.73 -0.10 -1.73 16 4 C -0.13 -1.87 4.89 -26.73 -0.13 -2.00 16 5 C 0.14 2.51 2.41 -67.93 -0.16 2.35 16 6 H 0.09 1.75 7.57 -51.93 -0.39 1.35 16 7 C 0.14 2.99 5.82 -4.04 -0.02 2.97 16 8 N -0.73 -19.12 5.43 -59.91 -0.33 -19.44 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 13 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 N -0.69 -12.89 4.46 -55.23 -0.25 -13.14 16 18 C 0.61 11.43 6.35 -13.02 -0.08 11.35 16 19 O -0.55 -10.75 12.90 5.12 0.07 -10.68 16 20 C -0.05 -0.94 7.05 -82.57 -0.58 -1.52 16 21 N -0.41 -6.86 10.90 -10.53 -0.11 -6.98 16 22 C 0.14 1.82 12.73 -89.53 -1.14 0.68 16 23 N -0.37 -4.50 2.94 -62.18 -0.18 -4.68 16 24 C 0.05 0.44 10.95 -16.60 -0.18 0.26 16 25 C -0.13 -1.00 9.67 -39.91 -0.39 -1.39 16 26 C -0.09 -0.85 5.89 -104.50 -0.62 -1.47 16 27 C -0.11 -0.75 10.03 36.01 0.36 -0.39 16 28 C -0.07 -0.88 9.38 -39.54 -0.37 -1.25 16 29 C 0.08 1.15 6.72 -83.99 -0.56 0.59 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.06 5.66 -51.93 -0.29 0.76 16 36 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.39 10.92 7.33 -40.82 -0.30 10.62 16 42 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.41 7.92 8.30 -40.82 -0.34 7.58 16 44 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.17 0.71 8.06 -52.48 -0.42 0.28 16 46 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 49 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 50 H 0.16 2.15 7.17 -52.49 -0.38 1.77 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -35.15 409.41 -10.94 -46.09 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -7.99 Total: 15.11 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -4.02 Total: -2.03 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.14 Total: -72.59 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.15 -10.94 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734093605.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.543 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds