Wall clock time and date at job start Wed Apr 1 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 C 1.53007 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47262 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46812 * 304.99956 * 5 4 3 7 7 C 1.52999 * 109.47114 * 184.99769 * 5 4 3 8 8 N 1.46500 * 109.47226 * 184.99495 * 7 5 4 9 9 C 1.36937 * 119.99856 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99459 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00523 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99684 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47354 * 59.99845 * 13 11 9 15 15 H 1.48501 * 109.47240 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47241 * 299.99811 * 13 11 9 17 17 N 1.46498 * 109.47036 * 65.00021 * 5 4 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 5 4 19 19 O 1.21773 * 120.00065 * 0.28019 * 18 17 5 20 20 C 1.46293 * 120.00176 * 180.27650 * 18 17 5 21 21 N 1.34888 * 126.49197 * 0.02926 * 20 18 17 22 22 C 1.30182 * 109.73039 * 179.97438 * 21 20 18 23 23 N 1.36251 * 109.82393 * 0.02562 * 22 21 20 24 24 C 1.36535 * 132.78865 * 180.02562 * 23 22 21 25 25 C 1.35028 * 120.59649 * 179.23801 * 24 23 22 26 26 C 1.40391 * 120.44176 * 0.61333 * 25 24 23 27 27 C 1.50704 * 120.21728 * 179.63403 * 26 25 24 28 28 C 1.36333 * 119.55859 * 359.60665 * 26 25 24 29 29 C 1.37279 * 107.18137 * 359.72507 * 23 22 21 30 30 H 1.09000 * 109.47537 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46732 * 299.99992 * 1 2 3 32 32 H 1.09005 * 109.47125 * 59.99518 * 1 2 3 33 33 H 1.09000 * 109.46732 * 240.00007 * 2 1 3 34 34 H 1.08997 * 109.46919 * 120.00701 * 2 1 3 35 35 H 1.09000 * 109.47261 * 60.00332 * 3 2 1 36 36 H 1.08997 * 109.47610 * 299.99657 * 3 2 1 37 37 H 1.09000 * 109.47004 * 59.99954 * 4 3 2 38 38 H 1.09005 * 109.47038 * 300.00314 * 4 3 2 39 39 H 1.08995 * 109.47415 * 304.99804 * 7 5 4 40 40 H 1.09008 * 109.47087 * 65.00143 * 7 5 4 41 41 H 0.96998 * 120.00120 * 0.02562 * 8 7 5 42 42 H 0.96991 * 119.99962 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 5 4 44 44 H 1.08002 * 125.09299 * 180.02562 * 22 21 20 45 45 H 1.08006 * 119.69472 * 359.94946 * 24 23 22 46 46 H 1.07997 * 119.77556 * 180.20119 * 25 24 23 47 47 H 1.09001 * 109.46628 * 269.97424 * 27 26 25 48 48 H 1.08993 * 109.47596 * 29.97314 * 27 26 25 49 49 H 1.08999 * 109.47080 * 149.97861 * 27 26 25 50 50 H 1.08002 * 120.39937 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8848 0.0000 6 1 3.6452 3.4244 -0.8414 7 6 5.6049 2.8866 -0.1263 8 7 6.1033 4.2590 -0.0061 9 6 7.4472 4.5090 -0.0876 10 1 8.1396 3.6946 -0.2409 11 6 7.9193 5.8094 0.0269 12 7 7.0755 6.8019 0.2143 13 14 9.7525 6.1506 -0.0850 14 1 10.2603 5.6994 -1.4056 15 1 9.9950 7.6078 0.0665 16 1 10.4596 5.4158 0.9945 17 7 3.6932 3.5391 1.2524 18 6 2.4780 4.1109 1.3664 19 8 1.6999 4.0792 0.4302 20 6 2.0938 4.7695 2.6149 21 7 2.8478 4.8817 3.7277 22 6 2.1866 5.5295 4.6431 23 7 0.9571 5.8744 4.1680 24 6 -0.0947 6.5482 4.7194 25 6 -1.2188 6.7706 4.0050 26 6 -1.3285 6.3007 2.6867 27 6 -2.5886 6.5448 1.8969 28 6 -0.2873 5.6227 2.1255 29 6 0.8749 5.4084 2.8794 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9330 0.9287 -0.8909 38 1 3.9338 0.9283 0.8891 39 1 6.0358 2.2730 0.6648 40 1 5.8896 2.4805 -1.0970 41 1 5.4814 4.9905 0.1321 42 1 7.4055 7.7105 0.2939 43 1 4.3130 3.5643 1.9981 44 1 2.5572 5.7593 5.6312 45 1 -0.0225 6.9164 5.7321 46 1 -2.0415 7.3079 4.4532 47 1 -3.2816 5.7182 2.0540 48 1 -3.0509 7.4745 2.2283 49 1 -2.3446 6.6179 0.8370 50 1 -0.3572 5.2548 1.1125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734093605.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:40 Heat of formation + Delta-G solvation = 20.078601 kcal Electronic energy + Delta-G solvation = -30393.680651 eV Core-core repulsion = 26420.734685 eV Total energy + Delta-G solvation = -3972.945966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.82931 -40.76289 -38.79228 -37.80915 -36.26475 -35.10547 -34.96202 -33.00646 -32.19970 -31.79033 -30.44113 -28.79274 -27.77879 -25.90502 -24.87198 -24.05186 -23.76429 -22.96605 -21.85053 -21.71428 -21.11704 -19.40569 -19.02273 -17.73756 -17.42134 -17.29510 -17.07437 -16.68550 -16.41403 -15.95470 -15.75767 -15.57394 -15.22887 -15.14547 -15.11900 -14.68385 -14.46321 -14.34308 -14.12901 -13.82374 -13.50512 -13.42086 -13.15544 -12.95338 -12.87226 -12.76064 -12.67887 -12.50325 -12.47795 -12.17923 -12.01703 -11.87781 -11.85360 -11.52881 -11.43383 -11.40337 -11.33169 -11.00025 -10.87488 -10.35148 -9.89084 -9.01589 -8.49618 -7.93117 -5.23831 -0.35984 0.10803 1.32995 1.46079 1.50434 1.51393 1.56321 2.27829 2.36964 2.56426 2.65751 3.39661 3.42735 3.44063 3.63797 3.71444 3.81521 3.82967 4.01615 4.07651 4.14140 4.20905 4.29827 4.33215 4.36425 4.54662 4.56101 4.60307 4.69134 4.80060 4.83466 4.85227 4.89528 4.94247 4.99166 5.00593 5.07971 5.13995 5.16216 5.21901 5.28778 5.33607 5.39993 5.43188 5.49010 5.56088 5.58845 5.68817 6.15323 6.26013 6.51380 6.80348 7.32592 7.34935 8.06765 8.31173 9.29969 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.003559 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.958040 B = 7866.176348 C =10357.046643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.061 0.939 7 C 0.146 3.854 8 N -0.744 5.744 9 C -0.247 4.247 10 H 0.080 0.920 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.277 1.277 15 H -0.297 1.297 16 H -0.275 1.275 17 N -0.697 5.697 18 C 0.601 3.399 19 O -0.573 6.573 20 C -0.121 4.121 21 N -0.449 5.449 22 C 0.148 3.852 23 N -0.371 5.371 24 C 0.063 3.937 25 C -0.136 4.136 26 C -0.053 4.053 27 C -0.113 4.113 28 C -0.126 4.126 29 C 0.080 3.920 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.405 0.595 44 H 0.260 0.740 45 H 0.220 0.780 46 H 0.198 0.802 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.064 0.936 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.296 -4.678 11.663 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.079 0.921 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.378 4.378 10 H 0.098 0.902 11 C -0.269 4.269 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.203 1.203 15 H -0.223 1.223 16 H -0.201 1.201 17 N -0.346 5.346 18 C 0.390 3.610 19 O -0.454 6.454 20 C -0.252 4.252 21 N -0.164 5.164 22 C -0.129 4.129 23 N -0.042 5.042 24 C -0.058 4.058 25 C -0.156 4.156 26 C -0.057 4.057 27 C -0.170 4.170 28 C -0.146 4.146 29 C -0.034 4.034 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.240 0.760 44 H 0.276 0.724 45 H 0.236 0.764 46 H 0.215 0.785 47 H 0.109 0.891 48 H 0.117 0.883 49 H 0.083 0.917 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.714 -5.110 11.147 25.813 hybrid contribution 0.787 1.091 -0.007 1.345 sum -21.927 -4.019 11.140 24.921 Atomic orbital electron populations 1.21719 0.95647 1.01857 1.01198 1.21538 0.96194 0.95816 1.02247 1.21516 0.94535 0.96721 1.01231 1.21912 0.96211 0.94024 1.03340 1.21176 0.94192 0.94215 0.86146 0.92094 1.21111 0.90941 0.86845 0.99160 1.42537 1.04605 1.03749 1.87742 1.19642 0.84936 0.92836 1.40427 0.90178 1.25637 1.02227 0.95582 1.03416 1.69871 1.34936 0.99034 1.58255 0.85144 0.79777 0.76160 0.78232 1.20302 1.22346 1.20119 1.45691 1.15775 1.56361 1.16748 1.16696 0.81798 0.77154 0.85328 1.90721 1.52448 1.62130 1.40104 1.20399 0.93762 1.14878 0.96200 1.69960 1.30797 1.15311 1.00294 1.25869 0.80901 1.03804 1.02348 1.43273 1.13932 1.36044 1.10912 1.22705 0.85519 0.95611 1.01989 1.21383 0.98858 1.02008 0.93339 1.20450 0.96054 0.93860 0.95361 1.20902 0.92727 1.04200 0.99133 1.20568 0.90905 1.02312 1.00769 1.19380 0.96905 1.00466 0.86650 0.91311 0.93976 0.93158 0.91087 0.91975 0.94006 0.93387 0.89345 0.91045 0.94734 0.94013 0.79653 0.94225 0.76014 0.72430 0.76369 0.78520 0.89102 0.88302 0.91680 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.12 -2.88 5.93 30.59 0.18 -2.70 16 3 C -0.10 -3.15 3.82 30.59 0.12 -3.03 16 4 C -0.12 -3.55 4.89 30.60 0.15 -3.40 16 5 C 0.15 5.71 2.41 44.99 0.11 5.82 16 6 H 0.06 2.67 7.57 -2.39 -0.02 2.65 16 7 C 0.15 6.25 5.82 86.38 0.50 6.75 16 8 N -0.74 -40.53 5.43 -343.45 -1.87 -42.40 16 9 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 10 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 11 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 12 N -0.97 -62.85 13.06 21.65 0.28 -62.56 16 13 Si 0.98 47.90 29.55 68.60 2.03 49.93 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 N -0.70 -28.37 4.46 -446.83 -1.99 -30.36 16 18 C 0.60 25.20 6.35 86.34 0.55 25.75 16 19 O -0.57 -25.11 12.90 -4.58 -0.06 -25.17 16 20 C -0.12 -4.66 7.05 41.23 0.29 -4.37 16 21 N -0.45 -15.97 10.90 -187.24 -2.04 -18.01 16 22 C 0.15 3.71 12.73 179.97 2.29 6.00 16 23 N -0.37 -8.63 2.94 -350.65 -1.03 -9.66 16 24 C 0.06 0.78 10.95 83.22 0.91 1.70 16 25 C -0.14 -1.49 9.67 22.06 0.21 -1.28 16 26 C -0.05 -0.93 5.89 -19.78 -0.12 -1.04 16 27 C -0.11 -1.26 10.03 71.24 0.71 -0.54 16 28 C -0.13 -3.47 9.38 22.30 0.21 -3.26 16 29 C 0.08 2.56 6.72 39.22 0.26 2.82 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.04 1.48 5.66 -2.39 -0.01 1.47 16 36 H 0.05 1.63 7.85 -2.39 -0.02 1.61 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.37 22.31 7.33 -92.71 -0.68 21.63 16 42 H 0.25 15.65 8.31 -92.72 -0.77 14.88 16 43 H 0.40 17.09 8.30 -92.71 -0.77 16.32 16 44 H 0.26 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 46 H 0.20 0.31 8.06 -2.91 -0.02 0.29 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.10 0.58 8.10 -2.39 -0.02 0.56 16 49 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 50 H 0.14 4.20 7.17 -2.91 -0.02 4.18 16 Total: -1.00 -83.66 409.41 3.23 -80.43 By element: Atomic # 1 Polarization: 49.32 SS G_CDS: -0.50 Total: 48.82 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 8.40 Total: 8.98 kcal Atomic # 7 Polarization: -156.35 SS G_CDS: -6.65 Total: -163.00 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -83.66 3.23 -80.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734093605.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.511 kcal (2) G-P(sol) polarization free energy of solvation -83.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds