Wall clock time and date at job start Wed Apr 1 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31883 * 118.95565 * 2 1 4 4 C 1.32132 * 120.96663 * 179.67910 * 3 2 1 5 5 C 1.39969 * 118.91980 * 0.61050 * 4 3 2 6 6 C 1.47834 * 120.93876 * 179.69705 * 5 4 3 7 7 O 1.21547 * 120.00118 * 132.60547 * 6 5 4 8 8 N 1.34785 * 119.99842 * 312.60868 * 6 5 4 9 9 C 1.47017 * 125.64749 * 6.12901 * 8 6 5 10 10 C 1.54319 * 107.27244 * 178.90636 * 9 8 6 11 11 C 1.55158 * 102.94131 * 337.81217 * 10 9 8 12 12 H 1.09004 * 111.03490 * 277.41228 * 11 10 9 13 13 C 1.53004 * 111.00869 * 153.57833 * 11 10 9 14 14 N 1.46494 * 109.47277 * 181.34977 * 13 11 10 15 15 C 1.46501 * 120.00481 * 89.99725 * 14 13 11 16 16 C 1.36934 * 119.99989 * 269.99724 * 14 13 11 17 17 H 1.08001 * 120.00278 * 141.39181 * 16 14 13 18 18 C 1.38817 * 119.99829 * 321.39482 * 16 14 13 19 19 N 1.31618 * 120.00154 * 157.63386 * 18 16 14 20 20 Si 1.86799 * 119.99840 * 337.62645 * 18 16 14 21 21 H 1.48501 * 109.46966 * 95.30703 * 20 18 16 22 22 H 1.48501 * 109.47286 * 215.30608 * 20 18 16 23 23 H 1.48507 * 109.47415 * 335.30771 * 20 18 16 24 24 C 1.47419 * 125.64446 * 186.09306 * 8 6 5 25 25 C 1.39924 * 118.12426 * 359.42656 * 5 4 3 26 26 C 1.50707 * 120.54096 * 180.29655 * 25 5 4 27 27 C 1.53000 * 117.49771 * 189.95222 * 26 25 5 28 28 C 1.52997 * 117.50014 * 121.29234 * 26 25 5 29 29 N 1.31854 * 118.94548 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47008 * 269.98390 * 1 2 3 31 31 H 1.09006 * 109.46702 * 29.97979 * 1 2 3 32 32 H 1.09000 * 109.47311 * 149.98037 * 1 2 3 33 33 H 1.07996 * 120.54101 * 180.30631 * 4 3 2 34 34 H 1.09005 * 109.88293 * 298.32569 * 9 8 6 35 35 H 1.09003 * 109.88492 * 59.33436 * 9 8 6 36 36 H 1.08998 * 110.72632 * 219.44623 * 10 9 8 37 37 H 1.08996 * 110.72284 * 96.16787 * 10 9 8 38 38 H 1.08991 * 109.47131 * 61.34074 * 13 11 10 39 39 H 1.09002 * 109.46741 * 301.34590 * 13 11 10 40 40 H 1.09000 * 109.46915 * 264.97431 * 15 14 13 41 41 H 1.08993 * 109.47636 * 144.97120 * 15 14 13 42 42 H 1.09004 * 109.46967 * 24.96196 * 15 14 13 43 43 H 0.96998 * 120.00038 * 179.97438 * 19 18 16 44 44 H 1.09005 * 110.36974 * 85.32877 * 24 8 6 45 45 H 1.08997 * 110.36755 * 322.99496 * 24 8 6 46 46 H 1.08997 * 115.54570 * 335.61990 * 26 25 5 47 47 H 1.09000 * 117.50124 * 359.97438 * 27 26 25 48 48 H 1.09001 * 117.49494 * 145.02159 * 27 26 25 49 49 H 1.08998 * 117.49632 * 214.98461 * 28 26 25 50 50 H 1.08997 * 117.49560 * 359.96927 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2003 0.0063 5 6 4.1855 -0.0002 0.0001 6 6 5.6638 -0.0004 0.0001 7 8 6.2715 -0.7171 0.7711 8 7 6.3378 0.7942 -0.8549 9 6 5.7375 1.7973 -1.7466 10 6 6.8911 2.4774 -2.5136 11 6 8.1179 2.2145 -1.6008 12 1 8.1692 2.9457 -0.7941 13 6 9.4144 2.2067 -2.4131 14 7 10.5451 1.9242 -1.5256 15 6 10.9687 0.5407 -1.2962 16 6 11.2063 2.9535 -0.9103 17 1 11.5494 2.8430 0.1078 18 6 11.4354 4.1391 -1.5951 19 7 11.6533 5.2527 -0.9282 20 14 11.4346 4.1538 -3.4630 21 1 10.0907 4.5509 -3.9543 22 1 12.4468 5.1249 -3.9508 23 1 11.7658 2.7975 -3.9690 24 6 7.7990 0.8020 -1.0502 25 6 3.4660 -1.2004 -0.0004 26 6 4.1855 -2.5246 -0.0003 27 6 3.3483 -3.7834 -0.2353 28 6 3.9030 -3.4820 1.1592 29 7 2.1452 -1.1538 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 3.9818 2.1492 0.0113 34 1 5.0610 1.3110 -2.4494 35 1 5.1930 2.5368 -1.1594 36 1 6.7086 3.5471 -2.6157 37 1 7.0309 2.0140 -3.4902 38 1 9.5550 3.1803 -2.8823 39 1 9.3560 1.4374 -3.1832 40 1 10.4982 0.1624 -0.3886 41 1 12.0524 0.5060 -1.1852 42 1 10.6703 -0.0759 -2.1441 43 1 11.8138 6.0811 -1.4068 44 1 8.0893 0.0390 -1.7725 45 1 8.3095 0.6408 -0.1008 46 1 5.1971 -2.5099 -0.4058 47 1 2.2771 -3.6540 -0.3896 48 1 3.8094 -4.5972 -0.7951 49 1 4.7287 -4.0975 1.5162 50 1 3.1971 -3.1539 1.9222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753358825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:33 Heat of formation + Delta-G solvation = 72.622617 kcal Electronic energy + Delta-G solvation = -30610.771958 eV Core-core repulsion = 26640.104472 eV Total energy + Delta-G solvation = -3970.667486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69726 -39.80643 -37.89714 -37.37353 -35.61429 -33.93689 -33.33421 -32.05362 -31.33886 -29.40895 -28.94092 -26.82843 -25.88628 -25.33410 -24.13219 -22.85200 -22.51228 -21.39977 -21.12693 -20.21002 -19.78997 -18.19239 -17.36054 -16.87193 -16.70587 -16.22860 -15.76570 -15.41356 -15.36696 -15.11572 -14.44671 -14.29735 -14.03010 -13.69654 -13.53304 -13.23015 -13.06891 -12.98382 -12.82152 -12.63374 -12.52486 -12.39379 -12.19610 -11.85601 -11.84093 -11.80496 -11.59269 -11.49257 -11.07849 -10.89685 -10.86900 -10.75071 -10.49517 -10.34763 -10.27727 -10.00111 -9.81705 -9.60734 -9.57888 -9.51462 -8.62954 -8.54784 -6.83030 -6.04563 -3.47514 0.25658 0.67700 2.52577 2.86331 3.23536 3.23623 3.42041 3.46484 3.47062 3.65360 3.71160 3.98243 4.23721 4.46601 4.54271 4.65908 4.70441 4.71112 4.76534 4.81696 4.87233 5.04622 5.11346 5.15836 5.19544 5.31744 5.37975 5.42731 5.46556 5.50034 5.53691 5.62102 5.75475 5.83046 5.91402 5.93446 5.95529 6.00912 6.04554 6.11802 6.21688 6.24719 6.40237 6.55218 6.60104 6.66265 6.73167 6.83798 7.44522 7.70913 8.01398 8.02137 8.35643 8.94988 9.66259 10.07619 11.11069 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.002720 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.175486 B =10292.125178 C =11199.271200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.332 3.668 3 N -0.523 5.523 4 C 0.185 3.815 5 C -0.231 4.231 6 C 0.582 3.418 7 O -0.521 6.521 8 N -0.610 5.610 9 C 0.097 3.903 10 C -0.131 4.131 11 C -0.114 4.114 12 H 0.094 0.906 13 C 0.150 3.850 14 N -0.611 5.611 15 C 0.121 3.879 16 C -0.270 4.270 17 H 0.078 0.922 18 C 0.037 3.963 19 N -0.898 5.898 20 Si 0.877 3.123 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.270 1.270 24 C 0.121 3.879 25 C 0.261 3.739 26 C -0.124 4.124 27 C -0.157 4.157 28 C -0.143 4.143 29 N -0.520 5.520 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.012 0.988 41 H 0.042 0.958 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.128 0.872 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.681 -12.669 -2.076 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.237 5.237 4 C 0.018 3.982 5 C -0.239 4.239 6 C 0.368 3.632 7 O -0.398 6.398 8 N -0.343 5.343 9 C -0.025 4.025 10 C -0.169 4.169 11 C -0.136 4.136 12 H 0.112 0.888 13 C 0.023 3.977 14 N -0.334 5.334 15 C -0.024 4.024 16 C -0.398 4.398 17 H 0.095 0.905 18 C -0.164 4.164 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.194 1.194 24 C 0.000 4.000 25 C 0.114 3.886 26 C -0.143 4.143 27 C -0.194 4.194 28 C -0.181 4.181 29 N -0.234 5.234 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.193 0.807 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.146 0.854 47 H 0.126 0.874 48 H 0.118 0.882 49 H 0.122 0.878 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.319 -12.937 -1.609 25.847 hybrid contribution 1.012 0.484 -1.052 1.538 sum -21.306 -12.453 -2.661 24.822 Atomic orbital electron populations 1.20619 0.85288 1.04417 1.04129 1.23455 0.98375 0.83226 0.88308 1.68315 1.09537 1.29997 1.15883 1.23624 0.89423 0.97835 0.87299 1.21487 0.96168 0.96159 1.10067 1.17350 0.85477 0.80136 0.80244 1.90820 1.69144 1.41387 1.38427 1.48543 1.09230 1.37306 1.39241 1.22207 0.96941 0.90725 0.92671 1.22718 0.94193 1.01168 0.98859 1.23117 0.95350 0.95698 0.99432 0.88801 1.21130 0.85521 0.99497 0.91547 1.44045 1.31690 1.02543 1.55166 1.21179 0.98398 0.85550 0.97237 1.18748 1.32905 0.91981 0.96200 0.90469 1.25512 0.97654 0.95721 0.97482 1.69881 1.49970 0.98546 1.35494 0.86932 0.76550 0.77603 0.88243 1.21271 1.22889 1.19442 1.22388 0.77703 0.98002 1.01939 1.20804 0.88498 0.93353 0.85926 1.21003 0.99756 0.86228 1.07274 1.23035 1.00568 0.96622 0.99172 1.22914 1.03200 1.00440 0.91518 1.68038 1.08818 1.30192 1.16385 0.89307 0.89295 0.89428 0.80653 0.91810 0.91439 0.89746 0.90648 0.92266 0.94035 0.97014 0.93927 0.95454 0.92670 0.91733 0.89689 0.85393 0.87363 0.88214 0.87753 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.33 3.60 7.64 -157.07 -1.20 2.40 16 3 N -0.52 -6.10 10.32 -10.39 -0.11 -6.20 16 4 C 0.18 2.16 9.84 -16.77 -0.17 1.99 16 5 C -0.23 -3.04 5.44 -104.69 -0.57 -3.61 16 6 C 0.58 8.81 6.75 -12.33 -0.08 8.73 16 7 O -0.52 -9.45 15.82 5.32 0.08 -9.36 16 8 N -0.61 -8.72 3.33 -171.64 -0.57 -9.29 16 9 C 0.10 1.13 5.71 -3.07 -0.02 1.11 16 10 C -0.13 -1.68 6.42 -24.90 -0.16 -1.84 16 11 C -0.11 -1.93 3.29 -88.47 -0.29 -2.22 16 12 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 13 C 0.15 2.96 4.06 -4.04 -0.02 2.94 16 14 N -0.61 -13.91 2.38 -181.12 -0.43 -14.34 16 15 C 0.12 2.37 9.90 59.85 0.59 2.96 16 16 C -0.27 -7.33 9.93 -15.06 -0.15 -7.48 16 17 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 18 C 0.04 1.03 5.30 -17.43 -0.09 0.94 16 19 N -0.90 -26.71 13.97 55.49 0.78 -25.93 16 20 Si 0.88 21.31 25.10 -169.99 -4.27 17.05 16 21 H -0.28 -6.57 6.67 56.52 0.38 -6.19 16 22 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.12 1.94 5.40 -2.53 -0.01 1.92 16 25 C 0.26 3.31 6.51 -81.81 -0.53 2.78 16 26 C -0.12 -1.44 5.08 -91.77 -0.47 -1.90 16 27 C -0.16 -1.41 10.04 -26.69 -0.27 -1.68 16 28 C -0.14 -1.42 10.24 -26.70 -0.27 -1.69 16 29 N -0.52 -6.11 9.39 -6.67 -0.06 -6.17 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.18 1.73 5.94 -52.49 -0.31 1.42 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 5.92 -51.93 -0.31 0.37 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 38 H 0.06 1.29 3.41 -51.93 -0.18 1.12 16 39 H 0.04 0.73 7.82 -51.93 -0.41 0.33 16 40 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 41 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.03 0.46 7.84 -51.93 -0.41 0.05 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 44 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 45 H 0.08 1.57 7.47 -51.93 -0.39 1.18 16 46 H 0.13 1.62 6.92 -51.93 -0.36 1.26 16 47 H 0.11 0.98 7.62 -51.93 -0.40 0.58 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -32.29 397.32 -9.71 -42.01 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.78 Total: 1.11 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.34 Total: 5.15 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.40 Total: -61.94 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.27 Total: 17.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.29 -9.71 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753358825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.629 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds