Wall clock time and date at job start Wed Apr 1 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31883 * 118.95565 * 2 1 4 4 C 1.32132 * 120.96663 * 179.67910 * 3 2 1 5 5 C 1.39969 * 118.91980 * 0.61050 * 4 3 2 6 6 C 1.47834 * 120.93876 * 179.69705 * 5 4 3 7 7 O 1.21547 * 120.00118 * 132.60547 * 6 5 4 8 8 N 1.34785 * 119.99842 * 312.60868 * 6 5 4 9 9 C 1.47017 * 125.64749 * 6.12901 * 8 6 5 10 10 C 1.54319 * 107.27244 * 178.90636 * 9 8 6 11 11 C 1.55158 * 102.94131 * 337.81217 * 10 9 8 12 12 H 1.09004 * 111.03490 * 277.41228 * 11 10 9 13 13 C 1.53004 * 111.00869 * 153.57833 * 11 10 9 14 14 N 1.46494 * 109.47277 * 181.34977 * 13 11 10 15 15 C 1.46501 * 120.00481 * 89.99725 * 14 13 11 16 16 C 1.36934 * 119.99989 * 269.99724 * 14 13 11 17 17 H 1.08001 * 120.00278 * 141.39181 * 16 14 13 18 18 C 1.38817 * 119.99829 * 321.39482 * 16 14 13 19 19 N 1.31618 * 120.00154 * 157.63386 * 18 16 14 20 20 Si 1.86799 * 119.99840 * 337.62645 * 18 16 14 21 21 H 1.48501 * 109.46966 * 95.30703 * 20 18 16 22 22 H 1.48501 * 109.47286 * 215.30608 * 20 18 16 23 23 H 1.48507 * 109.47415 * 335.30771 * 20 18 16 24 24 C 1.47419 * 125.64446 * 186.09306 * 8 6 5 25 25 C 1.39924 * 118.12426 * 359.42656 * 5 4 3 26 26 C 1.50707 * 120.54096 * 180.29655 * 25 5 4 27 27 C 1.53000 * 117.49771 * 189.95222 * 26 25 5 28 28 C 1.52997 * 117.50014 * 121.29234 * 26 25 5 29 29 N 1.31854 * 118.94548 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47008 * 269.98390 * 1 2 3 31 31 H 1.09006 * 109.46702 * 29.97979 * 1 2 3 32 32 H 1.09000 * 109.47311 * 149.98037 * 1 2 3 33 33 H 1.07996 * 120.54101 * 180.30631 * 4 3 2 34 34 H 1.09005 * 109.88293 * 298.32569 * 9 8 6 35 35 H 1.09003 * 109.88492 * 59.33436 * 9 8 6 36 36 H 1.08998 * 110.72632 * 219.44623 * 10 9 8 37 37 H 1.08996 * 110.72284 * 96.16787 * 10 9 8 38 38 H 1.08991 * 109.47131 * 61.34074 * 13 11 10 39 39 H 1.09002 * 109.46741 * 301.34590 * 13 11 10 40 40 H 1.09000 * 109.46915 * 264.97431 * 15 14 13 41 41 H 1.08993 * 109.47636 * 144.97120 * 15 14 13 42 42 H 1.09004 * 109.46967 * 24.96196 * 15 14 13 43 43 H 0.96998 * 120.00038 * 179.97438 * 19 18 16 44 44 H 1.09005 * 110.36974 * 85.32877 * 24 8 6 45 45 H 1.08997 * 110.36755 * 322.99496 * 24 8 6 46 46 H 1.08997 * 115.54570 * 335.61990 * 26 25 5 47 47 H 1.09000 * 117.50124 * 359.97438 * 27 26 25 48 48 H 1.09001 * 117.49494 * 145.02159 * 27 26 25 49 49 H 1.08998 * 117.49632 * 214.98461 * 28 26 25 50 50 H 1.08997 * 117.49560 * 359.96927 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2003 0.0063 5 6 4.1855 -0.0002 0.0001 6 6 5.6638 -0.0004 0.0001 7 8 6.2715 -0.7171 0.7711 8 7 6.3378 0.7942 -0.8549 9 6 5.7375 1.7973 -1.7466 10 6 6.8911 2.4774 -2.5136 11 6 8.1179 2.2145 -1.6008 12 1 8.1692 2.9457 -0.7941 13 6 9.4144 2.2067 -2.4131 14 7 10.5451 1.9242 -1.5256 15 6 10.9687 0.5407 -1.2962 16 6 11.2063 2.9535 -0.9103 17 1 11.5494 2.8430 0.1078 18 6 11.4354 4.1391 -1.5951 19 7 11.6533 5.2527 -0.9282 20 14 11.4346 4.1538 -3.4630 21 1 10.0907 4.5509 -3.9543 22 1 12.4468 5.1249 -3.9508 23 1 11.7658 2.7975 -3.9690 24 6 7.7990 0.8020 -1.0502 25 6 3.4660 -1.2004 -0.0004 26 6 4.1855 -2.5246 -0.0003 27 6 3.3483 -3.7834 -0.2353 28 6 3.9030 -3.4820 1.1592 29 7 2.1452 -1.1538 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 3.9818 2.1492 0.0113 34 1 5.0610 1.3110 -2.4494 35 1 5.1930 2.5368 -1.1594 36 1 6.7086 3.5471 -2.6157 37 1 7.0309 2.0140 -3.4902 38 1 9.5550 3.1803 -2.8823 39 1 9.3560 1.4374 -3.1832 40 1 10.4982 0.1624 -0.3886 41 1 12.0524 0.5060 -1.1852 42 1 10.6703 -0.0759 -2.1441 43 1 11.8138 6.0811 -1.4068 44 1 8.0893 0.0390 -1.7725 45 1 8.3095 0.6408 -0.1008 46 1 5.1971 -2.5099 -0.4058 47 1 2.2771 -3.6540 -0.3896 48 1 3.8094 -4.5972 -0.7951 49 1 4.7287 -4.0975 1.5162 50 1 3.1971 -3.1539 1.9222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753358825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:32 Heat of formation + Delta-G solvation = 53.096645 kcal Electronic energy + Delta-G solvation = -30611.618668 eV Core-core repulsion = 26640.104472 eV Total energy + Delta-G solvation = -3971.514196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60768 -40.95119 -39.10427 -38.30447 -37.22496 -34.85715 -34.23686 -33.83244 -32.82339 -30.37398 -29.97068 -28.39414 -27.29816 -26.49452 -25.21509 -23.88168 -23.28307 -22.86617 -22.23749 -21.54570 -20.90844 -19.11876 -18.75047 -18.40501 -17.70376 -17.45061 -17.07808 -16.54324 -16.49916 -16.17248 -15.92455 -15.30433 -15.15587 -15.09742 -14.82038 -14.69921 -14.27841 -14.01041 -13.93549 -13.88060 -13.60747 -13.44990 -13.35108 -13.11316 -12.88162 -12.78136 -12.70758 -12.58695 -12.51979 -12.38021 -12.31446 -11.95453 -11.84091 -11.58100 -11.54066 -11.38535 -11.31468 -11.04280 -10.61626 -10.50276 -10.40768 -9.77256 -8.72945 -8.19455 -5.60235 -0.64898 -0.21514 1.31520 1.40937 1.45082 1.56213 1.75300 2.37276 2.43129 2.66362 2.84710 2.88133 3.01733 3.14327 3.22473 3.41676 3.61132 3.66994 3.76937 3.86618 3.96825 3.98515 4.01273 4.07262 4.23350 4.36607 4.45728 4.50925 4.58478 4.69250 4.69993 4.71030 4.72935 4.78213 4.79802 4.83376 4.86172 4.90443 4.95605 5.03757 5.04425 5.11759 5.17457 5.20262 5.22364 5.29561 5.42445 5.70826 5.95056 6.17774 6.31820 6.83956 6.86861 7.00459 7.63310 8.05143 9.00658 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.002720 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.175486 B =10292.125178 C =11199.271200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.329 3.671 3 N -0.531 5.531 4 C 0.191 3.809 5 C -0.249 4.249 6 C 0.583 3.417 7 O -0.562 6.562 8 N -0.610 5.610 9 C 0.097 3.903 10 C -0.121 4.121 11 C -0.111 4.111 12 H 0.056 0.944 13 C 0.145 3.855 14 N -0.624 5.624 15 C 0.122 3.878 16 C -0.264 4.264 17 H 0.030 0.970 18 C -0.018 4.018 19 N -0.949 5.949 20 Si 0.947 3.053 21 H -0.260 1.260 22 H -0.311 1.311 23 H -0.258 1.258 24 C 0.130 3.870 25 C 0.256 3.744 26 C -0.146 4.146 27 C -0.133 4.133 28 C -0.144 4.144 29 N -0.524 5.524 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.191 0.809 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.011 0.989 41 H 0.034 0.966 42 H 0.062 0.938 43 H 0.264 0.736 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.111 0.889 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.680 -13.891 -4.777 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 N -0.246 5.246 4 C 0.024 3.976 5 C -0.257 4.257 6 C 0.371 3.629 7 O -0.441 6.441 8 N -0.342 5.342 9 C -0.024 4.024 10 C -0.159 4.159 11 C -0.133 4.133 12 H 0.075 0.925 13 C 0.019 3.981 14 N -0.348 5.348 15 C -0.022 4.022 16 C -0.394 4.394 17 H 0.048 0.952 18 C -0.215 4.215 19 N -0.593 5.593 20 Si 0.775 3.225 21 H -0.186 1.186 22 H -0.240 1.240 23 H -0.182 1.182 24 C 0.008 3.992 25 C 0.109 3.891 26 C -0.165 4.165 27 C -0.170 4.170 28 C -0.181 4.181 29 N -0.239 5.239 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.208 0.792 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.136 0.864 49 H 0.129 0.871 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.369 -14.181 -4.339 29.386 hybrid contribution 1.899 0.809 -0.077 2.066 sum -23.470 -13.372 -4.417 27.371 Atomic orbital electron populations 1.20790 0.82454 1.05667 1.05309 1.24286 1.00053 0.82771 0.86558 1.68433 1.09271 1.30357 1.16520 1.23842 0.89631 0.97862 0.86268 1.21318 0.94711 0.97134 1.12510 1.17638 0.86319 0.79427 0.79517 1.90790 1.70138 1.43094 1.40055 1.48559 1.08512 1.37684 1.39455 1.22392 0.96788 0.90485 0.92766 1.22724 0.91970 1.02365 0.98862 1.22829 0.96217 0.95245 0.99009 0.92506 1.21258 0.85341 0.99575 0.91893 1.44160 1.32744 1.02616 1.55300 1.21223 0.97983 0.84369 0.98669 1.18550 1.32736 0.93422 0.94652 0.95248 1.26148 0.97874 0.95024 1.02445 1.70021 1.52428 0.99318 1.37542 0.85799 0.77315 0.77713 0.81719 1.18638 1.24026 1.18216 1.22130 0.78845 0.97783 1.00408 1.21009 0.89048 0.93593 0.85406 1.20992 0.99564 0.86973 1.08999 1.23103 1.00395 0.95350 0.98164 1.22971 1.03459 0.99941 0.91778 1.68145 1.08180 1.30596 1.16978 0.87938 0.88081 0.88115 0.79250 0.89456 0.89844 0.88656 0.88502 0.93925 0.90764 0.97098 0.94730 0.91943 0.92726 0.90459 0.93138 0.87020 0.87070 0.86379 0.87100 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.31 71.24 0.73 -0.16 16 2 C 0.33 6.39 7.64 138.71 1.06 7.45 16 3 N -0.53 -11.26 10.32 -186.79 -1.93 -13.19 16 4 C 0.19 4.14 9.84 85.07 0.84 4.98 16 5 C -0.25 -6.34 5.44 -19.91 -0.11 -6.45 16 6 C 0.58 17.64 6.75 86.78 0.59 18.23 16 7 O -0.56 -21.01 15.82 -3.86 -0.06 -21.07 16 8 N -0.61 -16.87 3.33 -815.22 -2.71 -19.58 16 9 C 0.10 1.99 5.71 86.73 0.49 2.48 16 10 C -0.12 -2.73 6.42 31.78 0.20 -2.53 16 11 C -0.11 -3.66 3.29 -9.40 -0.03 -3.69 16 12 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 13 C 0.14 5.45 4.06 86.38 0.35 5.80 16 14 N -0.62 -28.39 2.38 -726.95 -1.73 -30.12 16 15 C 0.12 4.70 9.90 127.77 1.27 5.96 16 16 C -0.26 -14.86 9.93 84.04 0.83 -14.02 16 17 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 18 C -0.02 -1.05 5.30 84.86 0.45 -0.60 16 19 N -0.95 -58.57 13.97 21.65 0.30 -58.27 16 20 Si 0.95 43.93 25.10 68.60 1.72 45.66 16 21 H -0.26 -10.95 6.67 99.48 0.66 -10.28 16 22 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 C 0.13 4.13 5.40 86.86 0.47 4.60 16 25 C 0.26 6.26 6.51 42.92 0.28 6.54 16 26 C -0.15 -3.31 5.08 -11.54 -0.06 -3.37 16 27 C -0.13 -2.17 10.04 30.62 0.31 -1.86 16 28 C -0.14 -2.74 10.24 30.62 0.31 -2.43 16 29 N -0.52 -11.42 9.39 -175.02 -1.64 -13.06 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.19 3.38 5.94 -2.91 -0.02 3.36 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.46 5.92 -2.39 -0.01 1.44 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 38 H 0.04 1.76 3.41 -2.39 -0.01 1.75 16 39 H 0.07 2.33 7.82 -2.39 -0.02 2.31 16 40 H 0.01 0.42 7.56 -2.39 -0.02 0.40 16 41 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 42 H 0.06 1.97 7.84 -2.38 -0.02 1.95 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.08 2.25 8.00 -2.38 -0.02 2.23 16 45 H 0.05 1.94 7.47 -2.39 -0.02 1.92 16 46 H 0.11 2.88 6.92 -2.39 -0.02 2.86 16 47 H 0.11 1.77 7.62 -2.39 -0.02 1.75 16 48 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -73.80 397.32 2.84 -70.96 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.90 Total: 17.73 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 7.99 Total: 20.94 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -7.71 Total: -134.22 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.72 Total: 45.66 kcal Total: -73.80 2.84 -70.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753358825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.054 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds