Wall clock time and date at job start Wed Apr 1 2020 03:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47078 * 2 1 4 4 C 1.53004 * 109.47262 * 119.99546 * 2 1 3 5 5 C 1.53005 * 109.46831 * 67.62475 * 4 2 1 6 6 H 1.09003 * 109.47225 * 307.18850 * 5 4 2 7 7 C 1.53002 * 109.46941 * 67.18726 * 5 4 2 8 8 N 1.46502 * 109.47142 * 174.99943 * 7 5 4 9 9 C 1.36934 * 119.99964 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.38819 * 120.00076 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99296 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47146 * 90.00231 * 13 11 9 15 15 H 1.48507 * 109.46892 * 209.99807 * 13 11 9 16 16 H 1.48503 * 109.47148 * 329.99827 * 13 11 9 17 17 N 1.46496 * 109.47063 * 187.18310 * 5 4 2 18 18 C 1.34778 * 119.99821 * 87.22078 * 17 5 4 19 19 O 1.21598 * 119.99949 * 4.66985 * 18 17 5 20 20 C 1.47521 * 120.00024 * 184.67247 * 18 17 5 21 21 C 1.39432 * 120.25316 * 352.40339 * 20 18 17 22 22 C 1.38286 * 120.28862 * 179.97438 * 21 20 18 23 23 C 1.37878 * 120.72553 * 0.02562 * 22 21 20 24 24 C 1.39678 * 120.10328 * 359.97438 * 23 22 21 25 25 N 1.35861 * 133.50528 * 180.02562 * 24 23 22 26 26 C 1.30084 * 109.53345 * 179.73332 * 25 24 23 27 27 N 1.36127 * 110.05267 * 0.39604 * 26 25 24 28 28 C 1.46493 * 126.31111 * 179.87045 * 27 26 25 29 29 C 1.37514 * 107.37539 * 359.61177 * 27 26 25 30 30 H 1.08999 * 109.47124 * 61.35469 * 1 2 3 31 31 H 1.09004 * 109.46802 * 181.35147 * 1 2 3 32 32 H 1.08996 * 109.47601 * 301.35004 * 1 2 3 33 33 H 1.09000 * 109.47697 * 240.00098 * 2 1 3 34 34 H 1.08995 * 109.46893 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46950 * 300.00090 * 3 2 1 36 36 H 1.09002 * 109.46585 * 60.00036 * 3 2 1 37 37 H 1.09003 * 109.46991 * 307.63135 * 4 2 1 38 38 H 1.08996 * 109.47621 * 187.62489 * 4 2 1 39 39 H 1.09006 * 109.46831 * 295.00094 * 7 5 4 40 40 H 1.09002 * 109.47398 * 54.99795 * 7 5 4 41 41 H 0.97003 * 120.00100 * 359.97438 * 8 7 5 42 42 H 0.97008 * 119.99546 * 180.02562 * 12 11 9 43 43 H 0.96999 * 120.00250 * 267.21721 * 17 5 4 44 44 H 1.08002 * 119.85602 * 0.02562 * 21 20 18 45 45 H 1.08001 * 119.63622 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.94786 * 179.97438 * 23 22 21 47 47 H 1.08005 * 124.97458 * 180.22904 * 26 25 24 48 48 H 1.08991 * 109.47534 * 257.95639 * 28 27 26 49 49 H 1.09001 * 109.47478 * 17.95610 * 28 27 26 50 50 H 1.09008 * 109.47012 * 137.95344 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6923 -2.2083 1.1574 6 1 0.6264 -2.3207 0.9587 7 6 2.4929 -2.8500 0.0224 8 7 2.2511 -4.2949 0.0104 9 6 2.8651 -5.0841 -0.9252 10 1 3.5280 -4.6415 -1.6539 11 6 2.6364 -6.4533 -0.9362 12 7 1.8289 -6.9927 -0.0477 13 14 3.4745 -7.5299 -2.2120 14 1 4.7781 -8.0029 -1.6811 15 1 2.6110 -8.6988 -2.5176 16 1 3.7006 -6.7440 -3.4515 17 7 2.0253 -2.8669 2.4229 18 6 1.1250 -2.8945 3.4255 19 8 0.0073 -2.4485 3.2514 20 6 1.4957 -3.4658 4.7341 21 6 2.7166 -4.1198 4.8947 22 6 3.0650 -4.6551 6.1212 23 6 2.2148 -4.5525 7.2018 24 6 0.9860 -3.9023 7.0671 25 7 -0.0364 -3.6476 7.9248 26 6 -0.9726 -2.9924 7.3032 27 7 -0.6178 -2.7907 6.0046 28 6 -1.4096 -2.0953 4.9869 29 6 0.6234 -3.3549 5.8256 30 1 -0.3633 0.4926 -0.9019 31 1 -0.3633 -1.0274 0.0242 32 1 -0.3634 0.5346 0.8776 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.5695 -0.2921 2.1340 38 1 3.1214 -0.6046 1.3202 39 1 2.1807 -2.4214 -0.9300 40 1 3.5555 -2.6607 0.1751 41 1 1.6560 -4.6925 0.6652 42 1 1.6694 -7.9495 -0.0552 43 1 2.8938 -3.2830 2.5392 44 1 3.3935 -4.2079 4.0578 45 1 4.0132 -5.1599 6.2337 46 1 2.4994 -4.9756 8.1538 47 1 -1.8974 -2.6596 7.7511 48 1 -1.8878 -2.8270 4.3359 49 1 -2.1729 -1.4876 5.4729 50 1 -0.7570 -1.4536 4.3947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753736780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:52 Heat of formation + Delta-G solvation = 54.121931 kcal Electronic energy + Delta-G solvation = -30925.266996 eV Core-core repulsion = 26953.797260 eV Total energy + Delta-G solvation = -3971.469736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21541 -39.72010 -37.47185 -37.03922 -34.92824 -33.95510 -33.58779 -31.50489 -30.52874 -29.53150 -28.76493 -27.09157 -26.85517 -25.60360 -24.21924 -22.86279 -22.13853 -22.08573 -20.97626 -19.83543 -19.47908 -17.66285 -17.34656 -17.03698 -16.58796 -15.94378 -15.77509 -15.44977 -15.11299 -14.87504 -14.47768 -14.22310 -14.08622 -13.69755 -13.54954 -13.53213 -13.25630 -13.10754 -12.85169 -12.57503 -12.23528 -12.22447 -12.02871 -11.92494 -11.77457 -11.61912 -11.37885 -11.14241 -10.90716 -10.81235 -10.76365 -10.51369 -10.38509 -10.30667 -10.27316 -10.03878 -9.77301 -9.30869 -8.93383 -8.68321 -8.40218 -8.05590 -6.99212 -5.80744 -3.11008 0.60854 1.48790 2.47831 2.71557 3.23327 3.37589 3.40656 3.45723 3.47561 3.94129 4.20435 4.52390 4.54256 4.79243 4.89126 4.92647 4.95253 4.99279 5.05114 5.24130 5.33378 5.36555 5.44078 5.49959 5.51657 5.60296 5.66106 5.68007 5.73259 5.77642 5.85935 5.87815 5.94803 6.06199 6.11247 6.13069 6.15245 6.29312 6.31394 6.37421 6.39595 6.46015 6.47483 6.54103 6.67774 6.75313 6.92159 7.12468 7.64995 7.77314 7.80621 8.36568 8.45320 9.48618 10.04189 10.39382 11.41271 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.003941 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.976203 B = 7103.882842 C = 9548.461102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.118 4.118 5 C 0.134 3.866 6 H 0.094 0.906 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.701 5.701 18 C 0.560 3.440 19 O -0.550 6.550 20 C -0.124 4.124 21 C -0.058 4.058 22 C -0.138 4.138 23 C -0.040 4.040 24 C 0.030 3.970 25 N -0.499 5.499 26 C 0.251 3.749 27 N -0.478 5.478 28 C 0.081 3.919 29 C 0.098 3.902 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.023 0.977 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.403 0.597 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.132 0.868 47 H 0.212 0.788 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 14.113 11.343 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.157 4.157 5 C 0.030 3.970 6 H 0.112 0.888 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.577 5.577 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.350 5.350 18 C 0.349 3.651 19 O -0.432 6.432 20 C -0.130 4.130 21 C -0.078 4.078 22 C -0.158 4.158 23 C -0.059 4.059 24 C -0.088 4.088 25 N -0.218 5.218 26 C -0.034 4.034 27 N -0.166 5.166 28 C -0.060 4.060 29 C -0.015 4.015 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.239 0.761 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.149 0.851 47 H 0.229 0.771 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.354 14.208 11.778 18.604 hybrid contribution 0.517 -0.875 -1.296 1.647 sum -1.837 13.333 10.482 17.059 Atomic orbital electron populations 1.21862 0.95165 1.02325 1.01030 1.21133 0.96082 0.95795 0.98582 1.21823 1.00787 0.96206 1.01336 1.21974 1.00999 0.94666 0.98083 1.21391 1.01862 0.90791 0.82986 0.88776 1.21013 0.96192 0.86593 0.94581 1.42353 1.56213 1.00466 1.38556 1.19196 1.21192 0.89043 1.08127 0.91176 1.24744 1.00000 0.96796 0.99091 1.69672 1.39878 1.11145 1.37033 0.86211 0.78678 0.80354 0.81041 1.21683 1.21782 1.20765 1.45930 1.18463 1.56707 1.13882 1.18215 0.84838 0.78022 0.84019 1.90678 1.20192 1.49566 1.82734 1.18863 0.95552 1.06597 0.92004 1.21224 0.94133 0.94429 0.98030 1.20831 1.00548 1.02262 0.92160 1.20419 0.90320 0.95917 0.99292 1.19021 0.96293 1.03974 0.89502 1.70479 1.01550 1.18293 1.31496 1.25357 0.99957 0.97453 0.80665 1.45294 1.14718 1.45408 1.11131 1.22686 0.95608 0.98200 0.89502 1.18600 0.87241 0.99484 0.96143 0.93131 0.91998 0.93049 0.90351 0.92828 0.92876 0.93089 0.91974 0.91814 0.94684 0.95949 0.78004 0.93457 0.76114 0.84543 0.84605 0.85055 0.77116 0.90374 0.91762 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.02 37.16 0.34 -1.41 16 2 C -0.10 -1.14 2.82 -90.62 -0.26 -1.40 16 3 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 4 C -0.12 -1.51 4.42 -26.73 -0.12 -1.63 16 5 C 0.13 2.11 2.18 -67.93 -0.15 1.96 16 6 H 0.09 1.68 5.66 -51.93 -0.29 1.38 16 7 C 0.14 2.68 5.52 -4.04 -0.02 2.66 16 8 N -0.73 -17.59 5.43 -59.90 -0.33 -17.91 16 9 C -0.24 -6.59 9.99 -15.06 -0.15 -6.75 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 13 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.70 -10.83 4.45 -54.85 -0.24 -11.08 16 18 C 0.56 9.06 7.73 -12.48 -0.10 8.96 16 19 O -0.55 -9.36 10.44 5.28 0.06 -9.31 16 20 C -0.12 -1.90 5.88 -104.95 -0.62 -2.52 16 21 C -0.06 -0.77 9.52 -39.12 -0.37 -1.14 16 22 C -0.14 -1.63 9.99 -39.70 -0.40 -2.02 16 23 C -0.04 -0.51 10.09 -39.18 -0.40 -0.90 16 24 C 0.03 0.46 7.22 -84.72 -0.61 -0.15 16 25 N -0.50 -7.27 11.28 -12.05 -0.14 -7.40 16 26 C 0.25 2.99 12.48 -89.72 -1.12 1.87 16 27 N -0.48 -6.46 3.19 -122.94 -0.39 -6.85 16 28 C 0.08 0.95 9.18 59.84 0.55 1.50 16 29 C 0.10 1.52 6.78 -83.77 -0.57 0.95 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.85 6.46 -51.93 -0.34 0.51 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 38 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.04 0.66 6.71 -51.93 -0.35 0.31 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.39 10.03 7.33 -40.82 -0.30 9.74 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.40 5.95 6.69 -40.82 -0.27 5.67 16 44 H 0.14 1.63 6.44 -52.49 -0.34 1.30 16 45 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 48 H 0.08 1.04 7.62 -51.93 -0.40 0.64 16 49 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 50 H 0.12 1.63 5.42 -54.08 -0.29 1.34 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -32.84 398.55 -10.61 -43.45 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.53 Total: 14.58 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.74 Total: -1.49 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -0.37 Total: -70.20 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.31 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.84 -10.61 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753736780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.569 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds