Wall clock time and date at job start Wed Apr 1 2020 03:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47078 * 2 1 4 4 C 1.53004 * 109.47262 * 119.99546 * 2 1 3 5 5 C 1.53005 * 109.46831 * 67.62475 * 4 2 1 6 6 H 1.09003 * 109.47225 * 307.18850 * 5 4 2 7 7 C 1.53002 * 109.46941 * 67.18726 * 5 4 2 8 8 N 1.46502 * 109.47142 * 174.99943 * 7 5 4 9 9 C 1.36934 * 119.99964 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.38819 * 120.00076 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99296 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47146 * 90.00231 * 13 11 9 15 15 H 1.48507 * 109.46892 * 209.99807 * 13 11 9 16 16 H 1.48503 * 109.47148 * 329.99827 * 13 11 9 17 17 N 1.46496 * 109.47063 * 187.18310 * 5 4 2 18 18 C 1.34778 * 119.99821 * 87.22078 * 17 5 4 19 19 O 1.21598 * 119.99949 * 4.66985 * 18 17 5 20 20 C 1.47521 * 120.00024 * 184.67247 * 18 17 5 21 21 C 1.39432 * 120.25316 * 352.40339 * 20 18 17 22 22 C 1.38286 * 120.28862 * 179.97438 * 21 20 18 23 23 C 1.37878 * 120.72553 * 0.02562 * 22 21 20 24 24 C 1.39678 * 120.10328 * 359.97438 * 23 22 21 25 25 N 1.35861 * 133.50528 * 180.02562 * 24 23 22 26 26 C 1.30084 * 109.53345 * 179.73332 * 25 24 23 27 27 N 1.36127 * 110.05267 * 0.39604 * 26 25 24 28 28 C 1.46493 * 126.31111 * 179.87045 * 27 26 25 29 29 C 1.37514 * 107.37539 * 359.61177 * 27 26 25 30 30 H 1.08999 * 109.47124 * 61.35469 * 1 2 3 31 31 H 1.09004 * 109.46802 * 181.35147 * 1 2 3 32 32 H 1.08996 * 109.47601 * 301.35004 * 1 2 3 33 33 H 1.09000 * 109.47697 * 240.00098 * 2 1 3 34 34 H 1.08995 * 109.46893 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46950 * 300.00090 * 3 2 1 36 36 H 1.09002 * 109.46585 * 60.00036 * 3 2 1 37 37 H 1.09003 * 109.46991 * 307.63135 * 4 2 1 38 38 H 1.08996 * 109.47621 * 187.62489 * 4 2 1 39 39 H 1.09006 * 109.46831 * 295.00094 * 7 5 4 40 40 H 1.09002 * 109.47398 * 54.99795 * 7 5 4 41 41 H 0.97003 * 120.00100 * 359.97438 * 8 7 5 42 42 H 0.97008 * 119.99546 * 180.02562 * 12 11 9 43 43 H 0.96999 * 120.00250 * 267.21721 * 17 5 4 44 44 H 1.08002 * 119.85602 * 0.02562 * 21 20 18 45 45 H 1.08001 * 119.63622 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.94786 * 179.97438 * 23 22 21 47 47 H 1.08005 * 124.97458 * 180.22904 * 26 25 24 48 48 H 1.08991 * 109.47534 * 257.95639 * 28 27 26 49 49 H 1.09001 * 109.47478 * 17.95610 * 28 27 26 50 50 H 1.09008 * 109.47012 * 137.95344 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6923 -2.2083 1.1574 6 1 0.6264 -2.3207 0.9587 7 6 2.4929 -2.8500 0.0224 8 7 2.2511 -4.2949 0.0104 9 6 2.8651 -5.0841 -0.9252 10 1 3.5280 -4.6415 -1.6539 11 6 2.6364 -6.4533 -0.9362 12 7 1.8289 -6.9927 -0.0477 13 14 3.4745 -7.5299 -2.2120 14 1 4.7781 -8.0029 -1.6811 15 1 2.6110 -8.6988 -2.5176 16 1 3.7006 -6.7440 -3.4515 17 7 2.0253 -2.8669 2.4229 18 6 1.1250 -2.8945 3.4255 19 8 0.0073 -2.4485 3.2514 20 6 1.4957 -3.4658 4.7341 21 6 2.7166 -4.1198 4.8947 22 6 3.0650 -4.6551 6.1212 23 6 2.2148 -4.5525 7.2018 24 6 0.9860 -3.9023 7.0671 25 7 -0.0364 -3.6476 7.9248 26 6 -0.9726 -2.9924 7.3032 27 7 -0.6178 -2.7907 6.0046 28 6 -1.4096 -2.0953 4.9869 29 6 0.6234 -3.3549 5.8256 30 1 -0.3633 0.4926 -0.9019 31 1 -0.3633 -1.0274 0.0242 32 1 -0.3634 0.5346 0.8776 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.5695 -0.2921 2.1340 38 1 3.1214 -0.6046 1.3202 39 1 2.1807 -2.4214 -0.9300 40 1 3.5555 -2.6607 0.1751 41 1 1.6560 -4.6925 0.6652 42 1 1.6694 -7.9495 -0.0552 43 1 2.8938 -3.2830 2.5392 44 1 3.3935 -4.2079 4.0578 45 1 4.0132 -5.1599 6.2337 46 1 2.4994 -4.9756 8.1538 47 1 -1.8974 -2.6596 7.7511 48 1 -1.8878 -2.8270 4.3359 49 1 -2.1729 -1.4876 5.4729 50 1 -0.7570 -1.4536 4.3947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753736780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:51 Heat of formation + Delta-G solvation = 35.039174 kcal Electronic energy + Delta-G solvation = -30926.094487 eV Core-core repulsion = 26953.797260 eV Total energy + Delta-G solvation = -3972.297227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.22440 -40.95186 -38.62505 -38.11769 -36.35918 -35.23717 -34.88736 -33.11902 -31.86174 -30.65235 -29.96509 -28.00184 -27.83789 -27.21587 -25.36092 -24.49086 -23.36049 -23.14300 -22.14098 -20.97561 -20.59639 -19.22933 -18.57546 -18.40381 -17.66427 -17.02341 -17.00347 -16.78485 -16.21975 -16.12177 -15.90856 -15.42558 -15.20769 -15.10918 -14.97219 -14.61353 -14.45732 -14.25419 -14.12005 -13.88114 -13.41552 -13.30138 -13.14718 -12.99500 -12.90352 -12.77173 -12.69754 -12.61793 -12.39632 -12.22047 -12.02750 -11.83563 -11.75472 -11.54390 -11.42479 -11.36493 -11.34231 -10.95785 -10.45936 -9.93165 -9.42815 -9.10002 -9.00173 -7.93793 -5.23343 -0.43548 0.44944 1.43536 1.48482 1.49431 1.57825 1.76391 2.11210 2.16673 2.56370 2.86584 3.26909 3.40710 3.56945 3.70248 3.78897 3.93907 3.95740 4.00637 4.06416 4.18919 4.20279 4.32926 4.35249 4.42415 4.48037 4.57164 4.60554 4.70858 4.75701 4.82240 4.86988 4.92778 4.96645 4.99161 5.05676 5.12646 5.13560 5.20410 5.28063 5.35615 5.38022 5.47919 5.49801 5.50600 5.53782 5.63963 5.78157 6.19268 6.26298 6.53503 6.80497 7.21542 7.34041 8.07775 8.31249 9.29037 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.003941 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.976203 B = 7103.882842 C = 9548.461102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.105 4.105 5 C 0.146 3.854 6 H 0.070 0.930 7 C 0.146 3.854 8 N -0.742 5.742 9 C -0.243 4.243 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.968 5.968 13 Si 0.970 3.030 14 H -0.285 1.285 15 H -0.301 1.301 16 H -0.269 1.269 17 N -0.700 5.700 18 C 0.553 3.447 19 O -0.564 6.564 20 C -0.147 4.147 21 C -0.061 4.061 22 C -0.132 4.132 23 C -0.043 4.043 24 C 0.009 3.991 25 N -0.527 5.527 26 C 0.262 3.738 27 N -0.486 5.486 28 C 0.088 3.912 29 C 0.070 3.930 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.406 0.594 44 H 0.145 0.855 45 H 0.169 0.831 46 H 0.154 0.846 47 H 0.259 0.741 48 H 0.056 0.944 49 H 0.106 0.894 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 15.383 11.703 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.144 4.144 5 C 0.041 3.959 6 H 0.088 0.912 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.619 5.619 13 Si 0.800 3.200 14 H -0.212 1.212 15 H -0.228 1.228 16 H -0.194 1.194 17 N -0.349 5.349 18 C 0.344 3.656 19 O -0.447 6.447 20 C -0.153 4.153 21 C -0.081 4.081 22 C -0.152 4.152 23 C -0.062 4.062 24 C -0.109 4.109 25 N -0.246 5.246 26 C -0.023 4.023 27 N -0.173 5.173 28 C -0.053 4.053 29 C -0.043 4.043 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.242 0.758 44 H 0.163 0.837 45 H 0.186 0.814 46 H 0.171 0.829 47 H 0.274 0.726 48 H 0.075 0.925 49 H 0.124 0.876 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.393 15.528 12.119 19.747 hybrid contribution 0.194 -1.203 -1.376 1.838 sum -1.199 14.325 10.742 17.946 Atomic orbital electron populations 1.21828 0.95465 1.00940 1.01852 1.21133 0.95830 0.97072 0.97492 1.21773 1.01211 0.94547 1.02092 1.21872 1.01733 0.92247 0.98594 1.21206 0.99900 0.92493 0.82296 0.91204 1.21151 0.97239 0.83807 0.95858 1.42524 1.55723 1.02530 1.37724 1.19617 1.20264 0.89517 1.08046 0.90322 1.25513 1.01284 0.98264 1.01284 1.69840 1.42022 1.10835 1.39166 0.85188 0.77430 0.78258 0.79158 1.21185 1.22773 1.19433 1.45890 1.18537 1.56862 1.13618 1.18488 0.84711 0.77894 0.84556 1.90693 1.20706 1.50219 1.83129 1.18934 0.96738 1.08073 0.91565 1.21462 0.93613 0.93969 0.99094 1.21183 1.01506 1.01404 0.91105 1.20791 0.89672 0.95235 1.00520 1.19451 0.97308 1.04539 0.89555 1.70483 1.02255 1.19824 1.32055 1.26300 1.00592 0.95550 0.79840 1.45498 1.14380 1.45512 1.11933 1.22564 0.95758 0.97509 0.89437 1.18912 0.88355 1.00495 0.96522 0.91892 0.94431 0.92656 0.91174 0.92113 0.91903 0.92589 0.92176 0.90546 0.94346 0.94552 0.79501 0.94220 0.75786 0.83696 0.81399 0.82879 0.72553 0.92488 0.87571 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.02 71.98 0.65 -2.73 16 2 C -0.10 -2.17 2.82 -10.79 -0.03 -2.20 16 3 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 4 C -0.11 -2.62 4.42 30.60 0.14 -2.48 16 5 C 0.15 4.64 2.18 44.99 0.10 4.73 16 6 H 0.07 2.60 5.66 -2.39 -0.01 2.59 16 7 C 0.15 5.39 5.52 86.38 0.48 5.87 16 8 N -0.74 -36.08 5.43 -343.43 -1.87 -37.95 16 9 C -0.24 -13.05 9.99 84.04 0.84 -12.21 16 10 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 12 N -0.97 -58.85 13.06 21.65 0.28 -58.56 16 13 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 N -0.70 -22.13 4.45 -445.70 -1.98 -24.12 16 18 C 0.55 18.58 7.73 86.69 0.67 19.25 16 19 O -0.56 -20.15 10.44 -4.02 -0.04 -20.19 16 20 C -0.15 -4.61 5.88 -20.07 -0.12 -4.73 16 21 C -0.06 -1.63 9.52 22.57 0.21 -1.41 16 22 C -0.13 -2.96 9.99 22.20 0.22 -2.74 16 23 C -0.04 -1.05 10.09 22.53 0.23 -0.82 16 24 C 0.01 0.28 7.22 39.40 0.28 0.57 16 25 N -0.53 -14.92 11.28 -192.03 -2.17 -17.08 16 26 C 0.26 5.88 12.48 180.03 2.25 8.13 16 27 N -0.49 -13.01 3.19 -542.88 -1.73 -14.74 16 28 C 0.09 2.07 9.18 127.77 1.17 3.24 16 29 C 0.07 2.20 6.78 39.26 0.27 2.47 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.06 6.46 -2.38 -0.02 1.04 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.70 6.44 -2.39 -0.02 1.69 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 38 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 39 H 0.04 1.43 6.71 -2.38 -0.02 1.41 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.37 19.96 7.33 -92.71 -0.68 19.28 16 42 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 43 H 0.41 12.14 6.69 -92.71 -0.62 11.52 16 44 H 0.15 3.46 6.44 -2.91 -0.02 3.44 16 45 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 47 H 0.26 2.79 8.06 -2.91 -0.02 2.76 16 48 H 0.06 1.57 7.62 -2.39 -0.02 1.55 16 49 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 50 H 0.10 2.83 5.42 -36.50 -0.20 2.63 16 Total: -1.00 -72.44 398.55 2.49 -69.95 By element: Atomic # 1 Polarization: 46.26 SS G_CDS: -0.51 Total: 45.75 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 8.48 Total: 9.61 kcal Atomic # 7 Polarization: -144.99 SS G_CDS: -7.47 Total: -152.46 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.19 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.44 2.49 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753736780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.988 kcal (2) G-P(sol) polarization free energy of solvation -72.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds