Wall clock time and date at job start Wed Apr 1 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31879 * 118.95738 * 2 1 4 4 C 1.32131 * 120.96981 * 179.97438 * 3 2 1 5 5 C 1.39969 * 118.92272 * 0.02562 * 4 3 2 6 6 C 1.47838 * 120.93681 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99504 * 174.15153 * 6 5 4 8 8 N 1.34771 * 120.00271 * 354.15072 * 6 5 4 9 9 C 1.46498 * 120.00239 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.01431 * 325.70501 * 9 8 6 11 11 C 1.54269 * 110.02999 * 87.09114 * 9 8 6 12 12 C 1.54896 * 104.19290 * 142.89551 * 11 9 8 13 13 C 1.54884 * 102.74857 * 322.06074 * 12 11 9 14 14 H 1.09005 * 110.48678 * 279.12549 * 13 12 11 15 15 C 1.53002 * 110.48753 * 156.62151 * 13 12 11 16 16 N 1.46503 * 109.47311 * 66.44852 * 15 13 12 17 17 C 1.36932 * 120.00028 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99978 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47296 * 120.00213 * 21 19 17 24 24 H 1.48500 * 109.46831 * 239.99977 * 21 19 17 25 25 C 1.53871 * 110.03678 * 204.31033 * 9 8 6 26 26 C 1.39922 * 118.12036 * 359.97438 * 5 4 3 27 27 C 1.50701 * 120.53654 * 180.02562 * 26 5 4 28 28 C 1.53005 * 117.49838 * 179.81227 * 27 26 5 29 29 C 1.52999 * 117.49713 * 111.15334 * 27 26 5 30 30 N 1.31864 * 118.95072 * 179.73333 * 2 1 3 31 31 H 1.09005 * 109.47155 * 89.99282 * 1 2 3 32 32 H 1.08998 * 109.47365 * 209.99775 * 1 2 3 33 33 H 1.09000 * 109.46517 * 329.99623 * 1 2 3 34 34 H 1.08007 * 120.54029 * 179.97438 * 4 3 2 35 35 H 0.97004 * 119.99929 * 0.02562 * 8 6 5 36 36 H 1.08996 * 110.48619 * 261.57564 * 11 9 8 37 37 H 1.09001 * 110.48306 * 24.22320 * 11 9 8 38 38 H 1.09000 * 110.75145 * 80.37700 * 12 11 9 39 39 H 1.09000 * 110.75631 * 203.74374 * 12 11 9 40 40 H 1.08997 * 109.47519 * 186.45586 * 15 13 12 41 41 H 1.09003 * 109.47055 * 306.45133 * 15 13 12 42 42 H 0.97003 * 119.99429 * 0.02562 * 16 15 13 43 43 H 0.97002 * 119.99948 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.03178 * 0.02562 * 25 9 8 45 45 H 1.09004 * 110.03276 * 121.42716 * 25 9 8 46 46 H 1.09001 * 115.55250 * 325.48204 * 27 26 5 47 47 H 1.08993 * 117.49918 * 0.02562 * 28 27 26 48 48 H 1.09000 * 117.49951 * 145.02447 * 28 27 26 49 49 H 1.08999 * 117.50013 * 214.97849 * 29 27 26 50 50 H 1.08998 * 117.49893 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1539 0.0000 4 6 3.4660 1.2003 0.0005 5 6 4.1855 -0.0003 0.0005 6 6 5.6639 -0.0003 0.0016 7 8 6.2715 -1.0476 0.1089 8 7 6.3379 1.1608 -0.1163 9 6 7.8029 1.1608 -0.1146 10 1 8.1752 0.3777 0.5459 11 6 8.3330 0.9404 -1.5465 12 6 9.5883 1.8439 -1.6300 13 6 9.1612 3.0975 -0.8269 14 1 8.5536 3.7582 -1.4455 15 6 10.3906 3.8405 -0.3000 16 7 11.1476 4.3924 -1.4264 17 6 12.2957 5.1027 -1.1973 18 1 12.6434 5.2557 -0.1863 19 6 13.0127 5.6261 -2.2645 20 7 12.5887 5.4400 -3.4966 21 14 14.5793 6.5944 -1.9520 22 1 14.8369 6.6610 -0.4910 23 1 15.7192 5.9227 -2.6262 24 1 14.4266 7.9699 -2.4905 25 6 8.3296 2.5319 0.3441 26 6 3.4660 -1.2003 0.0005 27 6 4.1856 -2.5245 0.0011 28 6 3.3304 -3.7932 0.0055 29 6 4.0920 -3.3787 1.2669 30 7 2.1453 -1.1538 0.0054 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5139 34 1 3.9818 2.1492 0.0001 35 1 5.8530 1.9966 -0.2015 36 1 8.6043 -0.1045 -1.6962 37 1 7.5896 1.2515 -2.2805 38 1 10.4451 1.3589 -1.1623 39 1 9.8084 2.1048 -2.6652 40 1 10.0722 4.6508 0.3556 41 1 11.0218 3.1486 0.2577 42 1 10.8355 4.2546 -2.3344 43 1 13.0894 5.8061 -4.2423 44 1 7.4951 3.1972 0.5659 45 1 8.9582 2.4141 1.2268 46 1 5.1222 -2.5509 -0.5558 47 1 2.2474 -3.6701 0.0076 48 1 3.7046 -4.6543 -0.5481 49 1 4.9670 -3.9674 1.5427 50 1 3.5105 -2.9828 2.0995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755748456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:05 Heat of formation + Delta-G solvation = 39.313898 kcal Electronic energy + Delta-G solvation = -29281.154525 eV Core-core repulsion = 25309.042664 eV Total energy + Delta-G solvation = -3972.111861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83780 -39.93550 -38.15517 -37.49359 -34.94156 -34.18293 -33.52158 -33.15480 -31.11124 -29.49004 -28.83404 -27.63665 -25.76714 -24.55453 -24.01169 -22.61971 -22.22289 -21.49130 -21.27248 -20.39683 -19.68728 -18.28138 -17.95116 -17.04556 -16.78052 -16.28153 -15.99216 -15.48386 -15.13978 -14.92215 -14.86514 -14.32905 -14.25462 -14.00698 -13.72479 -13.45416 -13.12081 -13.01932 -12.93426 -12.82188 -12.39252 -12.16784 -12.05014 -11.85669 -11.84982 -11.68879 -11.36821 -11.11212 -10.87743 -10.86064 -10.74715 -10.59572 -10.54711 -10.30158 -10.25530 -9.94851 -9.86666 -9.75567 -9.71537 -9.67412 -9.19378 -8.86892 -6.90679 -5.76397 -3.04456 -0.00149 0.54862 2.50264 2.80259 3.20307 3.34245 3.43171 3.48835 3.49248 3.51065 3.63318 3.89762 4.26384 4.41814 4.55955 4.58527 4.65742 4.71145 4.74283 4.76403 4.81950 4.99629 5.04356 5.06295 5.36009 5.38168 5.41279 5.48113 5.51581 5.57041 5.58606 5.60950 5.63326 5.81476 5.84892 5.86356 5.87073 5.95888 6.06034 6.10885 6.23873 6.28036 6.44674 6.47487 6.54314 6.59358 6.78777 6.92499 7.19239 7.57288 7.70821 7.89760 8.42905 9.54118 10.12966 10.47502 11.46645 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.001836 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.731230 B =15243.793173 C =15981.256178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.340 3.660 3 N -0.526 5.526 4 C 0.190 3.810 5 C -0.247 4.247 6 C 0.569 3.431 7 O -0.522 6.522 8 N -0.715 5.715 9 C 0.142 3.858 10 H 0.093 0.907 11 C -0.133 4.133 12 C -0.110 4.110 13 C -0.097 4.097 14 H 0.075 0.925 15 C 0.160 3.840 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.123 4.123 26 C 0.270 3.730 27 C -0.121 4.121 28 C -0.163 4.163 29 C -0.147 4.147 30 N -0.522 5.522 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.173 0.827 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.149 0.851 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.163 -15.292 8.429 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 N -0.240 5.240 4 C 0.022 3.978 5 C -0.255 4.255 6 C 0.354 3.646 7 O -0.399 6.399 8 N -0.367 5.367 9 C 0.038 3.962 10 H 0.111 0.889 11 C -0.172 4.172 12 C -0.148 4.148 13 C -0.116 4.116 14 H 0.093 0.907 15 C 0.032 3.968 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.161 4.161 26 C 0.124 3.876 27 C -0.140 4.140 28 C -0.200 4.200 29 C -0.185 4.185 30 N -0.237 5.237 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.190 0.810 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.166 0.834 47 H 0.125 0.875 48 H 0.117 0.883 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.590 -15.945 8.618 31.359 hybrid contribution 1.531 1.225 -0.304 1.984 sum -24.059 -14.720 8.314 29.405 Atomic orbital electron populations 1.20656 0.85180 1.04543 1.04308 1.23529 0.98488 0.83186 0.87354 1.68294 1.09610 1.30117 1.16027 1.23485 0.89724 0.97597 0.86944 1.21559 0.96260 0.96056 1.11609 1.17706 0.85693 0.84363 0.76795 1.90742 1.69298 1.30673 1.49204 1.46180 1.07921 1.08544 1.74021 1.21793 0.77432 0.98917 0.98016 0.88893 1.22800 0.98299 1.00524 0.95585 1.22459 0.96399 0.94713 1.01271 1.22170 0.97026 0.96726 0.95667 0.90687 1.20695 0.90295 0.94452 0.91346 1.42350 1.27192 1.64107 1.03933 1.19284 0.99650 1.25194 0.92754 0.91189 1.24742 0.99449 1.01693 0.95267 1.69669 1.40575 1.50562 0.97457 0.86123 0.83326 0.79547 0.77242 1.20584 1.21889 1.21919 1.22461 0.99782 0.94370 0.99521 1.20991 0.88349 0.93845 0.84448 1.21318 1.01160 0.86201 1.05296 1.23044 0.99520 0.96707 1.00779 1.22886 1.02820 1.01608 0.91141 1.68119 1.09058 1.30112 1.16370 0.89088 0.89305 0.89203 0.81012 0.76745 0.91360 0.91515 0.91064 0.90827 0.96556 0.96257 0.78266 0.93607 0.91380 0.90317 0.83377 0.87541 0.88269 0.87796 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.31 36.01 0.37 -0.12 16 2 C 0.34 3.16 7.64 -157.06 -1.20 1.96 16 3 N -0.53 -5.08 10.31 -10.39 -0.11 -5.19 16 4 C 0.19 1.65 10.80 -16.77 -0.18 1.47 16 5 C -0.25 -2.52 5.91 -104.69 -0.62 -3.14 16 6 C 0.57 6.31 7.74 -12.34 -0.10 6.22 16 7 O -0.52 -7.10 13.23 5.32 0.07 -7.03 16 8 N -0.72 -6.76 5.00 -53.67 -0.27 -7.02 16 9 C 0.14 1.58 3.23 -66.81 -0.22 1.36 16 10 H 0.09 1.13 7.59 -51.93 -0.39 0.74 16 11 C -0.13 -1.64 6.53 -25.07 -0.16 -1.81 16 12 C -0.11 -1.63 6.01 -24.74 -0.15 -1.78 16 13 C -0.10 -1.44 2.93 -88.91 -0.26 -1.70 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C 0.16 3.09 5.55 -4.04 -0.02 3.07 16 16 N -0.73 -18.24 5.44 -59.91 -0.33 -18.57 16 17 C -0.24 -6.63 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C -0.12 -1.39 6.14 -25.56 -0.16 -1.55 16 26 C 0.27 2.92 6.53 -81.82 -0.53 2.39 16 27 C -0.12 -1.24 4.75 -91.77 -0.44 -1.67 16 28 C -0.16 -1.34 10.05 -26.69 -0.27 -1.61 16 29 C -0.15 -1.28 10.24 -26.69 -0.27 -1.55 16 30 N -0.52 -5.38 9.34 -6.68 -0.06 -5.45 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.17 0.94 6.58 -52.48 -0.35 0.59 16 35 H 0.40 2.77 6.48 -40.82 -0.26 2.51 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 38 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 42 H 0.38 10.02 7.52 -40.82 -0.31 9.72 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 0.65 7.61 -51.93 -0.40 0.26 16 45 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 46 H 0.15 1.70 6.15 -51.93 -0.32 1.38 16 47 H 0.11 0.89 7.58 -51.93 -0.39 0.50 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -33.21 406.18 -11.18 -44.39 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.85 Total: 8.61 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.45 Total: -5.80 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.04 Total: -63.68 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.03 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.21 -11.18 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755748456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.699 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds